BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470745
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2505 0.0
AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 291 2e-77
> AT1G07280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2238087-2241217 FORWARD LENGTH=2090
Length=2090
Score = 2505 bits (1356), Expect = 0.0
Identities = 1629/1755 (93%), Gaps = 42/1755 (2%)
Strand=Plus/Plus
Query 1 AAAATGGGAGTGAAAGTAGCAAC-AGCCTCTACCTTCCATCAATGGGTGGCTCATCCCAT 59
||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||
Sbjct 203 AAAATGGGAGTGAAAGTAGCAACAAG-CTCCACCTTCCATCAATGGGTGGCTCATCCTAT 261
Query 60 AGTTCATCA-------------T-TC--A---T--CTTCCTCCGCCGTTTCATCTCCTTC 98
||||||||| | || | | |||||||||||||||| ||||||||
Sbjct 262 AGTTCATCATTCCTCTTCCCTTTCTCAAACCCTAGCTTCCTCCGCCGTTTCTTCTCCTTC 321
Query 99 AAGACGACGGGTCATCGGAAACGACGGACGATCTTCTCTGTCTTGTCGTTCCGTGATGCA 158
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 322 AAGACGACGGATCATCGGAAACGACGGACGTTCTTCTCTGTCTTGTCGTTCCGTGATGCA 381
Query 159 GAGCCAGAGGCTTAATCCTTCTTCTCCCTTCGGCACTTCTTCCACGAATCTCCAACACTC 218
|||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 382 GAGCCAGAGGCTTAATCCTTCTTCTCCCTTCGGCACTTCTTCGACAAATCTCCGTCACTC 441
Query 219 CAAGTCATGTGAGCTCT-GGAGATCAACAAAACAACCTAATACTCAGTTGATTCGCAGAG 277
|||||| |||||||||| ||| ||||||||||| |||||| || ||||||||||||||||
Sbjct 442 CAAGTCCTGTGAGCTCTGGGA-ATCAACAAAACGACCTAAAACACAGTTGATTCGCAGAG 500
Query 278 CTTTTAGCGCAAACTGT-GATCCCTTTTCCGAGGAGGAGTTTTCTAAAAAGATGCAAGAG 336
|||||||||||||| || ||||| ||||||||||| |||||| | ||||||||||| |||
Sbjct 501 CTTTTAGCGCAAAC-GTCGATCCGTTTTCCGAGGAAGAGTTTGCGAAAAAGATGCAGGAG 559
Query 337 CTAACTCTCAAATTCCAAGTCTCTAACCAAGAAG-ACAAATACAAATCAGATACGA-GCA 394
||||||||||||||||||||||||||| |||||| | | | || |||| ||||| | |||
Sbjct 560 CTAACTCTCAAATTCCAAGTCTCTAACGAAGAAGAAGACA-ACGAATCGGATAC-ACGCA 617
Query 395 TTGACGATTCCACTCGAAAGATGGACATCGTAGGAAGCCATAGTAATTTCAGGTCAGATT 454
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 618 TTGACGATTACACTCGAAAGATGGACATAGTAGGAAGCCATAATAATTTCAGGTCAGATT 677
Query 455 CAATGGAACCGCCATGGCCAGAGATGGTGCAAATGTCTAGCATCGAGAGGAAAGCAAACA 514
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 678 CAATGGAACCGCCATGGCCAGAGATGGTGCAAATGTCAAACATCGAGAGGAAAGCAAACA 737
Query 515 GTGTCGATCTTCCTCTTTCGCTTAGGATCATAAAGAGAAAGTTACAGATGGAGGAAGGAG 574
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTGTAGATCTTCCTCTTTCGCTTAGGATCATAAAGAGAAAGTTACAGATGGAGGAAGGAG 797
Query 575 TTTTGAAA-CAAGTCGGAGAATCAGCTTGTTGCTCTGTGAAGAGAGCTTTCTCTTCAATG 633
|||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 798 TTTT-AAACCAAGTCGGAGAATCAGCTTGTTGCTCTGTTAAGAAAGCTTTCTCTTCAATG 856
Query 634 GTGTTTATGATTAGAGAACTTCAAAGCTTCACGTTACACATGAGAGAGCTTCTTCTCTTC 693
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 857 GTGTTTATGATTAGAGAACTTCAAAGCTTTACGTTACACATGAGAGAGCTTCTTCTCTTC 916
Query 694 GAAGATTTGCAAGGAATTCTTCATCGTGTGAGAAAAGAAATGCAAGCATCGTTTGTTTGG 753
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 917 GAAGATTTGCAAGGAATTCTTCATCGTGTGAGAAAAGAAATGCAAGCGTCGTTCGTTTGG 976
Query 754 TTGTTTCAACAAGTTTTCTCTGCTACTCCTACTTTGATGGTCTCTGTTATGATCCTTCTC 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TTGTTTCAACAAGTTTTCTCTGCTACTCCTACTTTGATGGTCTCTGTTATGATCCTTCTC 1036
Query 814 GCTAATTTCACGGTTTACTCTATTGAGAGCAACTCTGCTTTAGCCGCCGCCGTAAGTCCT 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GCTAATTTCACGGTTTACTCTATTGAGAGCAACTCTGCTTTAGCCGCCGCCGTAAGTCCC 1096
Query 874 CCGACAACCACCCTCTCTTTCAGCTTCGAAACGACGTCGGAGCTAAGTGAAACTCAAGAA 933
||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1097 CCGACAACC-C--TCTCTTTCAGCTTCGAAACGACGGCGGAGATAAGTGAAACTCAAGAA 1153
Query 934 ATAAACCAGAAGTTCGATTCTTCAATGGTTAAGACGTTCTCTGTTTCTTCTCCTTACGGG 993
| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 ACGAATCAGAAATTCGATTCTTCAATGGTTAAGACGTTCTCTGTTTCTTCTCCTTACGGG 1213
Query 994 AAAACATCATTTGTCGGTGGTGGCGGTGGGAACAACATCCCACCGCCAGTACAAAGCGGA 1053
|||||||| ||||||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 1214 AAAACATCTTTTGTCGGTGGTGGCGGCGGGAACAATATACCACCGCCGGTACAAAGCGGA 1273
Query 1054 ACAGAGGGGGATGGATCTGATCAATTCAGAAAATCTCAATTCTCATCATCGTCTCTCGGT 1113
||||| || |||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1274 ACAGATGGTGATGGATCTGATCAGTTTAGAAAATCTCAATTCTCATCATCGTCTCTGGGT 1333
Query 1114 GCAACAAGTGCGGATTCAGATGTATCTGTCTC-GGGCCAAGAAGAGATTAGACTGTGGAA 1172
||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||
Sbjct 1334 GCAACAAGTGCGGATTCAGATGTATCTGTGTCAGGGC-AAGAAGAGATCAGACTGTGGAA 1392
Query 1173 TTCGATCTTGGAGGAAACGGAGAAAATGGAAACGTTAGATCACGACACGATGAAGCAGCT 1232
|||||| ||||||||||| | ||||||||||||||| |||||||| ||||||||| | |
Sbjct 1393 TTCGATATTGGAGGAAACTGCGAAAATGGAAACGTTGGATCACGAGACGATGAAGGGGAT 1452
Query 1233 GGTTTCTCCGGTAGAGGCTAGATTAGAAGCAGAGGAATCCATGGATTACTTCAAGACAGA 1292
|||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1453 GGTTTCTCCGGTGGAAGCTCGATTAGAAGCAGAAGAATCCATGGATTACTTCAAGACAGA 1512
Query 1293 GCTTCTCTACCAAACGGGATTGTCTCAAGAGCCTGAAAACGTTCTTCTTCTTGCTAATTA 1352
|||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1513 GCTTCTTTACCAAACGGGATTGTCTCAGGAGCCTGGAAACGTTCTCCTTCTTGCTAATTA 1572
Query 1353 CGCACAGTTTCTCTAC-TTAATCATCCATGACTACGACAGAGCGGAAAAGTATTTCAAGA 1411
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1573 CGCACAGTTTCTCTACCTTA-TCATTCATGACTACGACAGAGCGGAAAAGTATTTCAAGA 1631
Query 1412 GAGCAGCAAAAGCAGAACCAGCGGACGCAGAGGCACTGAACAAATATGCAACGTTTCTGT 1471
|||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1632 GAGCAGCAAAAGCAGAGCCAGCGGACGCAGAGGCATTGAACAAATATGCGACGTTTCTGT 1691
Query 1472 GGAGAGCAAGAAACGATATTTGGAGAGCAGAGGAAACGTACTTAGAAGCGATCTCCGCTG 1531
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1692 GGAGAGCGAGAAACGATATTTGGAGAGCGGAGGAAACCTACTTAGAAGCGATCTCCGCTG 1751
Query 1532 ATCCAACAAACTCCGTCTACTCCGCAAACTACGCACATTTCCTTTGGAACACCGGTGGTG 1591
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1752 ATCCAACAAACTCAGTCTACTCCGCAAACTACGCACATTTCCTCTGGAACACCGGTGGTG 1811
Query 1592 ATGAAACGTGTTTCCCTCTCGATGCTCCACCGCAACAGAACAACACCACATGAAAAAAGA 1651
||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct 1812 ATGAAACGTGTTTTCCTCTCGACGCTCCATCGCAACAGAACAACACCACATGAATAAAGA 1871
Query 1652 GTCGCAACAATTTGTGTACGTACAGTGTGTTTTTTGCCTATACAAA-CTCATGTTCATGT 1710
||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1872 GTCACAACAATTTGTGTATGTACAGTGTGTTTTTTGCCTATACAAAACTCATGT-CATGT 1930
Query 1711 GGCAAACtttttttt 1725
|||||||||||||||
Sbjct 1931 GGCAAACTTTTTTTT 1945
> AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:12681958-12685087 REVERSE LENGTH=2149
Length=2149
Score = 291 bits (157), Expect = 2e-77
Identities = 343/427 (80%), Gaps = 36/427 (8%)
Strand=Plus/Plus
Query 452 ATTCAATGGAACCGCCATGGCCA-GAGATGGTGCAAATGTCTAGCATCGAGAGGAAAGCA 510
||||||| || ||||||||| | |||||||| || |||| || || || | |||||||
Sbjct 588 ATTCAATCGAGCCGCCATGG-AACGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 646
Query 511 AACAGTGTCGATCTTCCTCTTTCGCTTAGGATCATAAAG-AGAAA-GTTACAGAT-GGAG 567
|||||||| |||||||||||||| ||| | || |||||| ||||| | | || || |||
Sbjct 647 AACAGTGTTGATCTTCCTCTTTCACTTCGTATTATAAAGAAGAAACG-T-CA-ATGGGAA 703
Query 568 GAAGGAGTTTTGAAACAAGTC-GGAGAATCAGCTTGTTGCTCTG-TGAAGAGAGCTTTCT 625
||||||| || ||||||| | || ||||| || |||||||| | |||| | |||||| |
Sbjct 704 GAAGGAG--TT-AAACAAG-CTGGTGAATCTGCGTGTTGCTC-GATGAATAAAGCTTTTT 758
Query 626 CTTCAATGGTGTTTATGATTA-GAGAACTTCAAAGCTTCACGTTACACATGAGAGAGCTT 684
|||||||||||||||||| || | || ||||| ||||| || ||||| ||||||||| ||
Sbjct 759 CTTCAATGGTGTTTATGA-TACGGGAGCTTCAGAGCTTTACTTTACATATGAGAGAGATT 817
Query 685 CT-TCTCTTCGAAGATTTGCAAGGA-ATTCTT-CAT-CGTGTGAGAAAAGAAATGCAAGC 740
|| | ||| |||||| |||||| || ||| || | | | || ||| |||| |||||| |
Sbjct 818 CTGT-TCTACGAAGACTTGCAA-GAGATT-TTGC-TAAGAGTTAGAGAAGAGATGCAA-C 872
Query 741 -ATCGTTT-GTTTGGTTGTTTCAACAAGTTTTCTCTGCTACTCCTACTTTGATGGTCTCT 798
||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 873 AATC-TTTCGTTTGGTTGTTTCAACAAGTTTTCTCTGCTACTCCTACGTTGATGGTTTAT 931
Query 799 GTTATGATCCTTCTC-GCTAATTTCACGGTTTACTCTATTGAG-AGCAACT-CT--GCTT 853
|||||||| || || || |||||||| ||||| ||||| | | | |||| || ||||
Sbjct 932 GTTATGATTCT-CTTAGCCAATTTCACTGTTTATTCTATCG-GTAACAACAGCTCCGCTT 989
Query 854 TAGCCGC 860
|||||||
Sbjct 990 TAGCCGC 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5