BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470746
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07290.1 | Symbols: GONST2 | golgi nucleotide sugar transpor... 734 0.0
> AT1G07290.1 | Symbols: GONST2 | golgi nucleotide sugar transporter
2 | chr1:2242256-2244428 REVERSE LENGTH=1156
Length=1156
Score = 734 bits (397), Expect = 0.0
Identities = 438/458 (96%), Gaps = 2/458 (0%)
Strand=Plus/Plus
Query 177 AAGGTTTCTCAGATGGAGACGGAGATATCTTCCGGTTGATGGAGATAACAGACGTGACCA 236
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 150 AAGGTTTCTTAGATGGAGACGGAGATATCTTCCGGTTGATGGAGATAACAGGCGTGACCA 209
Query 237 CGGCTCTGTCAAACAGTCAGGACCCCTTGTGTCTGGAGCAGCTTACTGTGTCTCTTCCTG 296
||| ||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 210 CGGGTCTGTGAAACAGTCAGGACCTCTTGTGTCTGGTGCAGCTTACTGTATCTCTTCCTG 269
Query 297 CAGCATGATTATATTGAACAAAATTGTTCTCTCCAGCTATAATTTCAACGCAGGAATCTC 356
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 270 CAGCATGATTATATTGAACAAAATTGTTCTCTCCAGCTACAATTTCAACGCAGGGGTCTC 329
Query 357 TTTGATGCTATATCAAAACTTAATCAGCTGTTTGGTGGTAGCTGTACTAGATATCTCTGG 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TTTGATGCTTTATCAAAACTTAATCAGCTGTTTGGTGGTAGCTGTACTAGATATCTCTGG 389
Query 417 AGTAGTTTCAGTGGAAAAATTTAACTGGAAGTTGATCAGAGTCTGGATGCCTGTCAATGT 476
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 390 AGTGGTTTCAGTGGAAAAATTTAACTGGAAGTTGATTAGAGTATGGATGCCTGTCAATGT 449
Query 477 TATCTTTGTGGGCATGCTGGTCTCGGGAATGTACAGTTTGAAATACATTAATGTCGCTAT 536
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 450 TATCTTTGTGGGCATGCTGGTCTCGGGAATGTACAGTTTGAAATACATAAACGTCGCTAT 509
Query 537 GGTAACTATTCTGAAGAATGCGACGAATATTATTAC-GGCAATAGGGGAGGTATACATGT 595
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||
Sbjct 510 GGTAACTATTCTGAAGAATGCGACGAATATTCTCACAGG-AATAGGGGAGGTATACATGT 568
Query 596 TCCGCAAAAGGCAGAACAACAAGGTTTGGGCTGCAATG 633
||||||||||||||||||||||||||||||||||||||
Sbjct 569 TCCGCAAAAGGCAGAACAACAAGGTTTGGGCTGCAATG 606
Score = 444 bits (240), Expect = 9e-124
Identities = 265/277 (96%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 778 GGATGTGACAAAAGATGCAATGTTTTGGGTAGTGGCAACAGCAAGCGGCTTCCTTGGTCT 837
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 870 GGATGTGACAAAAGATTCAATGTTTTGGGTAGTGGCAACAGCAAGCGGTTTCCTTGGTTT 929
Query 838 AGCCATCAGCTTCACTTCGATGTGGTTCCTGCATCAAACCGGACCGACAACATACAGTTT 897
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 930 AGCCATCAGCTTCACTTCGATGTGGTTCCTGCATCAAACCGGACCCACAACATACAGTTT 989
Query 898 GGTGGGATCATTAAACAAGGTTCCGATATCACTAGCTGGTCTTGTACTCTTCAACGTCCC 957
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GGTGGGTTCATTAAACAAGGTTCCGATATCACTAGCTGGTCTTGTACTCTTCAACGTCCC 1049
Query 958 TCTGAATCTCCCAAATTTGTTCAGCATACTTTTTGGTTTATTTGCTGGAGTGGTCTTTGC 1017
||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1050 TCTCAGTCTCCCAAATCTGTTCAGCATACTGTTTGGTTTATTTGCTGGAGTGGTCTTTGC 1109
Query 1018 CAGAGCAAAAATGTCATAAA--GCGTATTTTCCAAGC 1052
|||||| ||||||||||||| |||||||||||||||
Sbjct 1110 CAGAGCTAAAATGTCATAAAAAGCGTATTTTCCAAGC 1146
Score = 180 bits (97), Expect = 3e-44
Identities = 136/153 (89%), Gaps = 9/153 (6%)
Strand=Plus/Plus
Query 1 ATGACTGCTGTGAAACTGGAAGCAATTGTTTGCCACGAGCCTGATGAATCAGAGCTGAGT 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGCCGTGAAACTGGAAGCAATTGTTTGCCACGAGCCTGATGAATCAGAGCTGAGT 60
Query 61 CACTTCAGTGGTAATGGTAGTAAAA--A----CG---TTGTCTTTCAACTTCTCGATCAA 111
||||| |||| |||||||||||||| | || ||||||||||||||||||||||
Sbjct 61 CACTTGAGTGATAATGGTAGTAAAACTAAAAACGGAGTTGTCTTTCAACTTCTCGATCAG 120
Query 112 AAGAGTTCCGAACGTAGGTGGTTAAGTGAAAGG 144
||||||||||||| ||| ||||| |||||||||
Sbjct 121 AAGAGTTCCGAACATAGATGGTTTAGTGAAAGG 153
Score = 119 bits (64), Expect = 6e-26
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 706 CTTACTCTTCGTCGAGTCATGGACAAAGCAAAGCAGTCTACAAAGTCTGGCTCGCTCAAT 765
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 715 CTTACTCTTCGTCGAGTTATGGACAAAGCAAAGCAGTCTACAAAGTCTGGCTCTCTTAAT 774
Query 766 GAAGTGTCAATGG 778
|||||||||||||
Sbjct 775 GAAGTGTCAATGG 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5