BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470753
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2102 0.0
AT2G29620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 154 3e-36
> AT1G07330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G29620.1);
Has 597 Blast hits to 536 proteins in 121 species: Archae
- 2; Bacteria - 47; Metazoa - 170; Fungi - 43; Plants - 98;
Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). |
chr1:2251131-2253585 FORWARD LENGTH=2058
Length=2058
Score = 2102 bits (1138), Expect = 0.0
Identities = 1501/1666 (90%), Gaps = 66/1666 (4%)
Strand=Plus/Plus
Query 1 ATGAGAATTGATGCCAAAGATGTCGGAACTCTGTTCTGGAAAATTCTCAGATTTTCCACG 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAATCGATGCCAAAGATGTCGGAACTCTGTTCTGGAAAATTCTCAGATTTTCCACG 60
Query 61 AACATCGTTTATACAAACAGGTCTGAGGAAGAAGAAACAAGAAAGGCTGACTTAAAGCAC 120
||||||||||||| || | | || | ||||||||||| ||||||||||||||||||
Sbjct 61 AACATCGTTTATA-GAA-A---C-GA-G--GAAGAAACAAGGAAGGCTGACTTAAAGCAC 111
Query 121 CAACGAAGTGTTCGACGAAATGCCAGAAGGAAAGTTGAAGAGGTTGGGAAAGATTGGGAC 180
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 112 CAACGAAGTGTTCGACGAAACGCTAGAAGGAAAGTTGAAGAGGTTGGGAAAGATTGGGAC 171
Query 181 TCTTCTCAGGCTAGCGAGGATGAGAGAGACAAAGTCATTTTAACAACTCTATATGGCGAA 240
|||||||||||||| || ||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 172 TCTTCTCAGGCTAGTGAAGATGAGAGAGACAGAGTCATTTTAACAACTCTCTATGGTGAA 231
Query 241 ATCCCCAACACTG-ATAAATCTCCCAAAC-TCGAGAAACCCAAGAAAGATAGAGCCTTTC 298
|| ||||| |||| | ||||||||||||| || ||||| |||||||||| |||||||||
Sbjct 232 ATTCCCAATACTGCA-AAATCTCCCAAACTTC-AGAAATTCAAGAAAGATGGAGCCTTTC 289
Query 299 TTGTTG-CAGAAGATTTCTCCTTTGAGCCTAGCTTAGATGAAGAAACTCTTTCAACAACC 357
||| || | |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 290 TTG-TGTCTGAAGGTTTCTCCTTTGAGCCTAGCTTAGATGAAGAAACTCTTTCAACCACC 348
Query 358 GGGAA---------TGTGGATCCATCGGAGAGGTTAACGAGTGGTGGTGGCGAAACCGAA 408
||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 349 GGGAATGTTTCCGTTGTGGATCCATCGGAGAGGTTGACTAGTGGTGGTGGCGAAACCGAG 408
Query 409 ATAGAATCTTCATCGTCATCAGAAGGC---GAAGAAGAAGAAATTATTCATGAAGACAAA 465
|| || | ||||||||||||||||||| ||||||||||||| || | ||||||||||
Sbjct 409 ATCGAGTGTTCATCGTCATCAGAAGGCGAAGAAGAAGAAGAAACTACACGTGAAGACAAA 468
Query 466 AAGGTACTTGTAGCTTGGACCGAGGATGATCAGAAGAATTTGATGGATTTAGGAAACTCT 525
|| | | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 469 AA-G-A-TTGTAGCTTGGACAGAGGATGATCAAAAGAATTTGATGGATTTAGGAAACTCT 525
Query 526 GAGATGGAACGTAACAAGAGATTAGAGCATTTGATTACAAGAAGGAA-AATGAGGAGATT 584
|||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||
Sbjct 526 GAGATGGAACGTAACAAGAGGTTAGAGCATTTGATTACTAGAA-GAAGAATGAGGAGATT 584
Query 585 AGTCCGACTTGCGGCTGAGAGTAGCTTAATGGATATGGAAGTTCCTTCAATATGTGTTGG 644
|||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 585 AGTCCGACTTGCCGCTGAGAGTAGCTTAATGGATATGGAAGTTCCTCCAGTCTGTGTTGG 644
Query 645 ACGCAACTATTTCGGTTTGCATCAAGAAAACTATATAGTTGATGGCCTTCAAATGCCTGA 704
||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 645 ACGGAACTATTTCGGTTTGGATCAAGAAAACTATATAGTTGATGGTCTTCAAATGCCTGA 704
Query 705 ATCTGCACCTTCTGTGTTATTACCAACTAAAAACCCCTTTGATATTCCTTATGATCCACA 764
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 705 ATCTGCACCTTCTGTGTTATTACCAACTAAAAACCCTTTTGATATTCCTTATGATCCACA 764
Query 765 AGAAGAGAAGCCTAACCTCTCAGGGGATAGTTTTCAGCAGGAGTTTGCAGCCAACCCTAA 824
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 765 AGAAGAGAAGCCTAACCTCTCAGGAGATAGTTTTCAGCAAGAGTTTGCAGCCAACCCTAA 824
Query 825 TGATATCTTCTTCTGCCGCCATGAAAGCTTTTGTCGCAGAGTCTTTCCATTGGAAAATCA 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 825 TGATATCTTCTTCTGCCGCCATGAAAGCTTTTGTCGCAGAGTCTTTCCATTGGACAATCA 884
Query 885 GCTTGACACGAAATGGGAACCGTGGAAAAAGTCAATTGATGGTTTGTCTAGACCACAACA 944
||||||||||||||||||||||||||||||| || | | | | |||||||||
Sbjct 885 GCTTGACACGAAATGGGAACCGTGGAAAAAG--AA--G-T-------CAATACCACAACA 932
Query 945 AGGTTGCAATGATGGATTGGTTGGGGACAAACATCCTATAATGAAAGGAAAAGATCTAAC 1004
|||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 933 AGGTAGCAATGATGGATTGGTTGGGGAGAAACATCCTGTAATGAAAGGAAAAGATCTAAC 992
Query 1005 AAGAGGAGAAGTAAATGATATGGAGTCAGAACACATGACAGAGATTGTTGTGAGTGATTC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 993 AAGAGGAGAAGTAAATGATATGGAGTCAGAACACATGACAGAGATTGTTGTTAGTGATTC 1052
Query 1065 AAACTCATTGCTTTCTCCTGTAGAAAGGGAAACGGATTCCAATGTCTCAAATCAAGCAGA 1124
|||||||||||||||||||| ||| ||||||| | |||| ||||||||||||||||| |
Sbjct 1053 AAACTCATTGCTTTCTCCTGAAGACAGGGAAATGAATTCTGATGTCTCAAATCAAGCATA 1112
Query 1125 TTCTTCTGGAACTTCCGGGAAACCAAATGGTGATCTTCGTATTGAAAACCCTTTAGTTGG 1184
|| |||||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1113 TTTTTCTGGAACTTCTGGGAAAGGAAATGGTGATCTTCGTGTTGAAAACCCTTTAGTTGG 1172
Query 1185 TTTAGTTCCTAGAAACACAGGTTCACTTTCGACTTCTTTAGCAGCCGAAAGGCAAAGATA 1244
|||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 1173 TTTAGTTCCTAGAAACACTGGTTCGCTTTCGAGTTCTTTAGCAGCGGAAAGGCAAAGATA 1232
Query 1245 CGTGGAGCATTTTGGTTACAGCTCAAGAAAAGGTCATAAGTTATCCGCAGAATCTGATCT 1304
|||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct 1233 CGTGGAGCATTTTGGTTATAGCTCAAAAAAAGGTCATAAGTTATCTGTAGAATCTGATCT 1292
Query 1305 TCAAGTTGAGTTTTCTGAAATCGGATCACCTCCCACTACAGTTGATGGGAATAATTCTTC 1364
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TCAAGTTGAGGTTTCTGAAATTGGATCACCTCCCACTACAGTTGATGGGAATAATTCTTC 1352
Query 1365 TGATGAAGAGAAATCAC-TCTTTGTCTACGAATCAGAAACCGGGAAGGAGACGCGCTTTA 1423
||||||||| ||||||| | || ||| |||||||||| | |||||||||||| | ||||
Sbjct 1353 TGATGAAGAAAAATCACGTATT-GTCAACGAATCAGACATTGGGAAGGAGACGGGATTTA 1411
Query 1424 GTGGTGAGGAAAATGAGGTGAAACAGAAGAGCATTGTGGATAGAACTGCAGAAACTCAAA 1483
|||||||||| ||| || ||||||||||||||| |||||||||||
Sbjct 1412 GTGGTGAGGA----GAG------CA--------TTGTGGATAGAACTGAAGAAACTCAAA 1453
Query 1484 TGTTACCAGTGGAGAAAGTTGGTCAAGTTTTCGATGAAAAGAGTTCTACAA-TCTCTCCA 1542
||||||||||||||||||||| | ||| ||| |||||| || ||||| | ||||||||
Sbjct 1454 TGTTACCAGTGGAGAAAGTTGATAAAGATTTAAATGAAACGATTTCTA-AGGTCTCTCCA 1512
Query 1543 GAAACTTATGAAGCCAAACAATTTGAGGGTCTGTCTGATGGTACAAATGTCAGTGAAAGA 1602
|||||||||| |||||||||| |||||||||||||||||||||| || ||| | ||||
Sbjct 1513 GAAACTTATGTAGCCAAACAAGTTGAGGGTCTGTCTGATGGTACTGATATCAACGGAAGA 1572
Query 1603 TCTGAGGAAGAAGATAGCTCAAAATCCGGACACTTTCCACTGGAAA 1648
|||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1573 TCTGAGGAAGAAGAGAGCTCAAAATCCGGACGCTTTCCACTGGAAA 1618
Score = 497 bits (269), Expect = 1e-139
Identities = 372/418 (89%), Gaps = 21/418 (5%)
Strand=Plus/Plus
Query 1647 AACAATTCCTCACATCAATGAAGTTATTCCAAGAAGAGAAGAGGAATCACTGGAACTTGT 1706
|||| ||||||||||||||||||||||| | ||||||||||||| | || | |||
Sbjct 1653 AACAGTTCCTCACATCAATGAAGTTATTTCGAGAAGAGAAGAGG-A--AC--G----TGT 1703
Query 1707 CCAAAACTCGACTGATGAGATGAAGATAAATGACGACTCTGATGAACCTGAA-CCCTT-- 1763
|||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 1704 CCAAAACTTGACTGATGAGATGAAGATAAATGATGACTCTGATGAACCTGAAGCCTTTGA 1763
Query 1764 ------AACAAATCAAGAATCCGAAGAGCATTTTGGGGGAAATGATGGAGACCAATCAAC 1817
||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 1764 AAGAAGAACAAATCAAGAACCCCAAGAACATTTTGGGGGAAATGATGGAGACCAATCAAC 1823
Query 1818 TCAAGAGATGCAAGAACTTATTGAACCTGAAGTTTCAAATGTGAACAATGTCACATCAGA 1877
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TCAAGAGTTGCAAGAACTTGTGGAACCTGAAGTTTCAAATGTGAACAATGTCACATCAGA 1883
Query 1878 CGAGTCTGCTACTTCCCCAAGATCAGTATTACCAGACATGTTGTTACCTTTAGACCAGAC 1937
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1884 CGAGTCTGCTACTTCCCCAAGATCAGTGTTACCAGACATGTTGTTATCTTTAGACCAGAC 1943
Query 1938 TTATACTCTGAATTCTGAGAGTTTGGAACATACATTAGATAGTCAACCTCAACTTGTCAT 1997
||||||||||| |||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1944 TTATACTCTGACTTCTGAGAGTTTGGAACATACATTAGATAGTCAACCTCCGCCAGTGAT 2003
Query 1998 TCCATATGCAGAATCTCCTCATAATCAATCAGGTGGTGTTGATGGGGACAGTAGATGA 2055
||||||| | |||||||| || ||||||||||||| | | |||||| |||||||||||
Sbjct 2004 TCCATATCCGGAATCTCCACAGAATCAATCAGGTG-T-T-GATGGGAACAGTAGATGA 2058
> AT2G29620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G07330.1);
Has 887 Blast hits to 750 proteins in 151 species: Archae
- 2; Bacteria - 63; Metazoa - 270; Fungi - 51; Plants - 111;
Viruses - 6; Other Eukaryotes - 384 (source: NCBI BLink). |
chr2:12662741-12665803 REVERSE LENGTH=2577
Length=2577
Score = 154 bits (83), Expect = 3e-36
Identities = 129/151 (85%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 91 GAAGAAACAAGA-AAGGCTGACTTAAAGCACCAACGAAGTGTTCGACGAAATGCCAGAAG 149
|||| ||| ||| |||||| | |||||||| |||| ||||||| |||||||||| |||||
Sbjct 287 GAAG-AAC-AGAGAAGGCTAAGTTAAAGCATCAACAAAGTGTTAGACGAAATGCAAGAAG 344
Query 150 GAAAGTTGAAGAGGTTGGGAAAGATTGGGACTCTTCTCAGGCTAGCGAGGATGAGAGAGA 209
|||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 345 GAAAGTTGAAGAGGTTGGGAAAGATTGGGATTCGTCTCAAGCTAGTGAGGATGAGAGAGG 404
Query 210 CAAAGTCATTTTAACAACTCTATATGGCGAA 240
|| || ||| | || ||||| ||||| |||
Sbjct 405 TAAGGTTATTCTGACTACTCTCTATGGAGAA 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5