BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470756
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1600 0.0
> AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257425-2260101 REVERSE LENGTH=1456
Length=1456
Score = 1600 bits (866), Expect = 0.0
Identities = 1126/1245 (90%), Gaps = 44/1245 (4%)
Strand=Plus/Plus
Query 10 GGAAACGTGAAATTCATTTTGTTCCGGT-GG--GTCAGGTGCAGAGAGTTCTGGAACATC 66
|||||||||||||||||||| |||||| || ||||||||||||||||||||| | ||
Sbjct 5 GGAAACGTGAAATTCATTTTACTCCGGTGGGTCGTCAGGTGCAGAGAGTTCTGG-A-AT- 61
Query 67 ATCCATTGAGC-T--AG-A--G-GAAAC-ATGTCTTACTCAAGAAGGTCAAGATACTCTC 118
|||||||| || | || | | | |||||||||||||||||||||||||||||||
Sbjct 62 ATCCATTGCGCTTGGAGAATCGTTCGCCGATGTCTTACTCAAGAAGGTCAAGATACTCTC 121
Query 119 CATCGCTGTCTCCTTATGACAAGCGTCGTGGAAGGTCTGTCTCAAGGTCATTGTCTAGAA 178
| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 122 CTTCACTATCTCCTTATGACAAGCGTCGTGGAAGGTCTGTGTCAAGGTCATTGTCTAGAA 181
Query 179 GCCGGTCAAGGAGTTTCTCAAGCGATGCTGAGAATCCTGGTAACAGTTTATATGTAACTG 238
||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GCCCGACGAGGAGTGTCTCAAGCGATGCTGAGAATCCTGGTAACAGTTTATATGTAACTG 241
Query 239 GATTGTCTCACCGGGTAACTGAAAGAGATCTCGAGGATCATTTCGCTAAAGAAGGAAAGG 298
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 242 GATTGTCTCACCGGGTTACTGAAAGAGATCTGGAGGATCATTTCGCTAAAGAAGGAAAGG 301
Query 299 TAACGGATGTTCACCTTGTCCTGGACCCATGGACTAGAGAATCTCGCGGATTTGGTTTTA 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TAACTGATGTTCACCTTGTCCTGGACCCATGGACTAGAGAATCTCGCGGATTTGGTTTTA 361
Query 359 TCTCTATGGAAAGTGTTGGTGATGCTAACCGTTGCATCAGATATCTAGATCACTCTGTTC 418
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 362 TCTCTATGAAAAGTGTTGGTGATGCTAACCGTTGCATCAGATCTCTAGATCACTCTGTTC 421
Query 419 TGCAGGGCAGAGTCATTACAGTTGAGAAGGCAAGGCG-CTGTAGAGGACGTACTCCGACT 477
|||||||| | ||||| || |||||||||||||| || | |||||||||||||||| |||
Sbjct 422 TGCAGGGCCGCGTCATCACTGTTGAGAAGGCAAGACGTC-GTAGAGGACGTACTCCAACT 480
Query 478 CCGGGAAAGTACTTGGGGCTGAGAACCGCTCGAGGACGCCATAAGTCTCCTAGCTACTCT 537
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 481 CCAGGAAAGTACTTGGGGCTGAGAACTGCTCGAGGACGACATAAGTCTCCTAGCTACTCT 540
Query 538 CCCTGCAGGTCTGTTAGCAGCTCTCGTAGTCG-A----A-GCTACTCATCTGATCGGAGC 591
||| |||||||||||||| ||||||||||||| | | ||||||||||||||||| ||
Sbjct 541 CCCCGCAGGTCTGTTAGCTGCTCTCGTAGTCGTAGTCGAAGCTACTCATCTGATCGGGGC 600
Query 592 AGATCTTATTCTCCAAGCTATGGGAGGAGAGGAAGGTCATCCTCGTCCTCACCCTTTTAT 651
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 601 AGATCTTATTCTCCAAGCTATGGGAGAAGAGGAAGGTCATCCTCGTACTCACCCTTCTAT 660
Query 652 AGGCGAGGCAGAT-CTTACTCTCCTTCGAGATCTCCATCGCCCGTTGATCGTTACTACAG 710
| ||| |||||| || ||||||||||||||||||| || || | |||||||||| ||||
Sbjct 661 CGACGACGCAGATTCT-ACTCTCCTTCGAGATCTCCTTCACCTGATGATCGTTACAACAG 719
Query 711 GAGACGCGAGAGATCATACTCACCTTACTACAGGCGAAGGGACCGGTCCAGGTCCAGATC 770
||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 720 GAGACGCGACAGATCATACTCACCTTACTACAGGCGGAGGGACCGGTCCAG----A--TC 773
Query 771 CTACTTGCCTTACTATAGAGCACGGGACAGATCACCTTACTACA-GACAGAGGTACAGGT 829
||||| | | ||| ||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 774 CTACTCACGTAACTGTAGAGCACGGGACAGATCACCTTACTACATG-CGGAGGTACAGGT 832
Query 830 CCAGATCCAGGTCATACTCGCCTCGCTACAGAGCACGTGACAGATCATACTCACCCTACT 889
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 833 CCAGATCCAGGTCATACTCGCCTCGCTACAGAGCACGTGACCGATCATGCTCACCCTACT 892
Query 890 ACAGAGGAAGAGACCGGTCCTATTCGCCTTACTACCAAGGGAGAGACAGGTCCTACTCAC 949
|||| |||||||||||||| ||||| || ||||||||||||||||||| ||||||||||
Sbjct 893 ACAGGGGAAGAGACCGGTCTTATTCACCCCACTACCAAGGGAGAGACAGATCCTACTCAC 952
Query 950 CTGAAAGTCGTCACTACAGAAGGTACAGGTCGGTATCGAGAAGCGTAAGCCCTGGGAGG- 1008
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct 953 CTGAAAGTCGTTACTACAGAAGGCACAGGTCGGTATCGGGAAGCGTAAGCCCTGG-AGGG 1011
Query 1009 AGAAGCATGTCATGGAGCACATCCCCAAAGAAGGGAAGGAAAGAGAGCAGAAGCAAGTCT 1068
|||||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1012 AGAAGCATGTCACGTAGCATATCCCCAAGGAAGGGAAGGAAAGAGAGCAGAAGCAAGTCT 1071
Query 1069 CGCAGGCGCGACAGGCAATCTTCAATGAGTCATTCGAGGAGCGCAAGATCAAGCACCTCC 1128
|| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1072 CGGAGGCACGACAGGCAATCTTCAATGTGTCATTCGAGGAGCGCAAGATCAAGCACCTCC 1131
Query 1129 AGATCCGTCAGCCCATAACAGTCTCTA-------G---TTGACATCAATCGCTCACGTCT 1178
||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1132 AGATCCGTCAGCCCATAACAGTCTCTACTTACTTGAAGTTGACATCAATCACTCACGTCT 1191
Query 1179 GTTGTTGTATTAAATATTTTGGGACACGTGTATTCCTTGTATTTG 1223
||||||||||||| |||||||||| || |||||||||||||||
Sbjct 1192 GTTGTTGTATTAAGCATTTTGGGACTTGTCTATTCCTTGTATTTG 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5