BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470760
Length=3070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07390.3 | Symbols: AtRLP1, RLP1 | receptor like protein 1 |... 2270 0.0
> AT1G07390.3 | Symbols: AtRLP1, RLP1 | receptor like protein 1
| chr1:2269893-2274820 FORWARD LENGTH=3418
Length=3418
Score = 2270 bits (1229), Expect = 0.0
Identities = 1384/1460 (95%), Gaps = 5/1460 (0%)
Strand=Plus/Plus
Query 1612 AGGGTTATGAAGCTCTCCAACAATCAATTACAGGGGAAAATATTTCCTAAGCATGCAAAC 1671
|||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1813 AGGGTTCTGAAGCTCTCCAACAATCAATTACAGGGGAAAATATTTTCGAAGCATGCAAAT 1872
Query 1672 CTTACTGGTTTAGTAGGGCTTTTTCTTGATGGCAACAATTTTACTGGGAGTCTCGGAGAA 1731
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1873 CTTACTGGTTTAGTTGGGCTTTTTCTTGATGGCAACAATTTTACTGGGAGTCTTGAAGAG 1932
Query 1732 GGTCTATTGAAGTCAAAGAATCTAACTCTTTTAGACATATCAGATAATAGGTTTTCGGGC 1791
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1933 GGTTTATTGAAGTCAAAGAATCTTACTCTTTTAGACATATCAGATAATAGGTTTTCGGGC 1992
Query 1792 ATGCTTCCGCGTTGGATTGGTAGGATGTCATGGCTTTCCTACCTATACATGAGTGGTAAT 1851
|||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1993 ATGCTTCCACTTTGGATTGGTAGGATATCAAGGCTTTCCTACCTATACATGAGTGGTAAT 2052
Query 1852 CAGCTAAAAGGTCCTTTCCCTTTTCAACAACAGAGTCCTTGGGTTGAGGTTATGGACATC 1911
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2053 CAGCTAAAAGGTCCTTTCCCTTTTCTACGACAGAGTCCTTGGGTTGAGGTTATGGACATC 2112
Query 1912 TCACACAATAGCTTCTCTGGTTTGATACCAAGGAATGTGAATTTTCCATCTCTCAGAGAA 1971
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2113 TCACACAATAGCTTCTCTGGTTCGATACCAAGGAATGTGAATTTTCCATCTCTCAGAGAA 2172
Query 1972 TTAAGACTACAAAACAATGAGTTTATGGGTTCAGTTCCGGGCAATTTATTCAATGCTGCG 2031
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||
Sbjct 2173 CTAAGACTACAAAACAATGAGTTTACGGGTTTAGTTCCGGGAAATTTATTCAAGGCTGCG 2232
Query 2032 GGATTAGAAGTGCTTGATTTGCGTAACAACAACTTTTCTGGAAAGATACTGAACACTATT 2091
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2233 GGATTAGAAGTGCTTGATTTGCGGAACAACAATTTTTCTGGAAAGATACTGAACACTATT 2292
Query 2092 GACCAGACATCTAAGTTACGCATTCTTCTTCTACGGAATAACAGCTTTCGAACTTATATT 2151
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 2293 GACCAGACATCTAAGTTACGTATTCTTCTTCTACGGAATAACAGCTTTCAAACTTATATC 2352
Query 2152 CCTGGGAAAATATGTCAGCTAAGTGAAGTTGGTCTCTTGGACTTGTCTCACAATCAATTC 2211
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2353 CCTGGGAAAATATGTCAGCTAAGTGAAGTTGGTCTGTTAGACTTGTCTCACAATCAATTC 2412
Query 2212 AGAGGCCCCATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAGAGCAGAATAACGGT 2271
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2413 AGAGGCCCCATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAGAGCAGAATGACCGT 2472
Query 2272 ACCATGTCACTTGTTGCAGATTTTGACTTCTCAGACATTACATTCTTGCGACATTGTCAT 2331
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2473 ACCATGTCACTTGTTGCAGATTTTGACTTCTCATACATTACATTCTTGCCACATTGTCAA 2532
Query 2332 TATGCATCACATCTTAACTTGGATGATGGTGTCAGGAATGGTTATCAACCAAAACCAGCA 2391
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2533 TATGGATCACATCTTAACTTGGATGATGGTGTCAGGAATGGTTATCAACCAAAACCAGCA 2592
Query 2392 ACCGTAGTGGATTTTTTAACGAAAAGCAGATATGAGGCGTATCAAGGTGATATTCTCCGC 2451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2593 ACCGTAGTGGATTTTTTAACGAAAAGCAGATATGAGGCGTATCAAGGTGATATTCTCCGC 2652
Query 2452 TATATGCATGGTCTGGATTTGTCGAGCAACGAACTATCGGGTGAAATTCCAATTGAGATT 2511
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2653 TATATGCATGGTCTGGATTTGTCGAGCAACGAACTATCGGGTGAAATTCCAATCGAGATT 2712
Query 2512 GGAGATCTTGAGAATATCAGATCCCTGAATTTGTCAAGCAATCGCCTCACAGGCTCCATA 2571
||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 2713 GGAGATCTTCAGAATATCAGGTCCCTGAATTTGTCAAGTAACCGCCTCACAGGCTCCATA 2772
Query 2572 CCAGATAGCATT-CAAAAGCTGAAGGGCTTAGAGAGTCTTGATCTATCCAATAATAAGCT 2630
|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2773 CCAGATAGCATTTCAAA-GCTGAAGGGCTTAGAGAGTCTTGATCTATCCAACAATAAGCT 2831
Query 2631 CTATGGAAGCATCCCTCCTATGCTAGCCGATCTCAACAGTTTAGGATACTTTAACATTTC 2690
||||||| ||||||||| |||||||||||||||||||||||||||||| || || ||
Sbjct 2832 AGATGGAAGTATCCCTCCTGCGCTAGCCGATCTCAACAGTTTAGGATACTTGAATATCTC 2891
Query 2691 ATATAACAATTTATCAGGTGAAATCCCTTTCAAAGGCCATCTTGTAACCTTTGACGAGAG 2750
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2892 ATATAACAATTTATCAGGTGAAATCCCTTTCAAAGGCCATCTTGTTACCTTTGACGAGAG 2951
Query 2751 GAGCTACATAGGCAATGCTCATCTATGTGGACTTCCTACAAATAAAAATTGCATCTCCCA 2810
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2952 GAGTTACATAGGCAACGCTCATCTCTGTGGACTTCCTACAAATAAAAATTGCATCTCCCA 3011
Query 2811 GAGAGTCCCTGAGCCACCAAGTGTACCAACGCAGGCCAAAGAGGAAGACAACGAAGAAGA 2870
|||||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||
Sbjct 3012 GAGAGTCCCTGAGCCACCAAGTGTGTCAACGCATGCCAAAGAGGAAGAAAATGAAGAAGA 3071
Query 2871 AGGTGATGTGATAGACATGGTGTGGTTTTATTGGACTTGTGTTGCAGTCTACATAGCTAC 2930
|||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||
Sbjct 3072 AGGTAATGTGATAGACATGGTGTGGTTTTACTGGACTTGTGCTGCAGTCTACATATCTAC 3131
Query 2931 ATCCTTGGCCTTGTTTGCTTTCCTCTGCATAGACACACGATGGTCCCGAGAATGGTTTTA 2990
||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 3132 ATCCTTGGCATTGTTTGCTTTCCTCTACATAGACTCACGATGGTCCCGAGAATGGTTTTA 3191
Query 2991 TCGTGTAGATCTATGCGTTCATCATCTCCTACGGTTCAAGCGTTCCTCTA-TCTGCAACT 3049
||||||||||||||||||||||||| | |||| ||||||||||||||| | |||||||||
Sbjct 3192 TCGTGTAGATCTATGCGTTCATCATATTCTACAGTTCAAGCGTTCCTC-AGTCTGCAACT 3250
Query 3050 GATTCCGTGGCTC-GCCAAG 3068
||||| |||| | ||||||
Sbjct 3251 GATTCTGTGGATTAGCCAAG 3270
Score = 1197 bits (648), Expect = 0.0
Identities = 783/848 (92%), Gaps = 10/848 (1%)
Strand=Plus/Plus
Query 4 GGTTTATTGCAACTCAAGTCGTATCTCAAGAATCTCCTTGACGCTgaagaagaagaagaa 63
||||| ||||| |||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 4 GGTTTGTTGCAGCTCAAGTCGTATCTCAAGAATCTCGTTGATGCCGAAGAAGAAGAAGAA 63
Query 64 gaagGACTTAGTATTCTCAAGTCATGGACTCATCAT-AATGATGATTGTTGCC-TCTGGG 121
|||||||||||||||||||||||||||||||||||| || | ||||||||||| | ||||
Sbjct 64 GAAGGACTTAGTATTCTCAAGTCATGGACTCATCATGAAGG-TGATTGTTGCCGT-TGGG 121
Query 122 AGAGAGTAAAGTGTAGTGACGCTACTAGTGGTCACGTCATCGATCTCTCACTGGATAGAC 181
||||||||||||||||||| |||| || ||| |||||||||| |||||||||||||||||
Sbjct 122 AGAGAGTAAAGTGTAGTGATGCTATTAATGGCCACGTCATCGGTCTCTCACTGGATAGAC 181
Query 182 TCATACCGGTCGCATTTGAGTCGCAAATTCGGACTTTAAACCTGTCTTTGCTTCATAGTT 241
|| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 182 TCGTACCGGTCGCATTTGAGTCGCAAACTCGGTCTTTAAATCTGTCTTTGCTTCATAGTT 241
Query 242 TTCCTCAACTCCAAAGCCTTAACCTCTCGTGGAATTGGTTTACTAATTTGTCTGATCACG 301
|||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 242 TTCCTCAACTCCAAAGCCTTAATCTTTCGTGGAATTGGTTCACTAATTTGTCTGATCACT 301
Query 302 TCCTTGGTTATAAGAGCTTTGGGAGACTAGAGAAGCTCACCACCATAGATTTCTCCCACA 361
||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||| |
Sbjct 302 TCCTTGGTTTTAAGAGCTTTGGGACACTAGATAAGCTCACTACCTTAGATTTCTCCCATA 361
Query 362 ATATGTTCGACAACAGTATTGTTCC-TTTCTTAAGTGCTGCGACATCGGTTAGGAATCTA 420
||||||||||||||||||| || || ||| |||| ||||||||||||| |||||| ||||
Sbjct 362 ATATGTTCGACAACAGTATCGTCCCGTTT-TTAAATGCTGCGACATCGATTAGGAGTCTA 420
Query 421 CATCTTGAGTCTAATTACATGGAAGGTGTCTTTCCTCCTCAAGAACTTGCAAACATGACA 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 CATCTTGAGTCTAATTACATGGAAGGTGTCTTTCCTCCTCAAGAACTTTCAAACATGACA 480
Query 481 AACTTGAGAGTGTTACACTTGAAGGACAACAGTTTCAGCTTCTTATCTGCTCAAGGTTTA 540
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 AACTTGAGAGTGTTAAACTTGAAGGACAACAGTTTCAGCTTCTTATCTTCTCAAGGTTTA 540
Query 541 ACCTATTTCAGAGAGTTAGAAGTACTGGATCTCAGTTTCAATGGTGTCAACGTCTCTGAG 600
|| |||||||||| || |||||||||||||||||||||||||||||||| | |||||||
Sbjct 541 ACAGATTTCAGAGATTTGGAAGTACTGGATCTCAGTTTCAATGGTGTCAATGACTCTGAG 600
Query 601 GCTAGTCACTGGTTTA-GTACGGCGAAACTGAAAACACTAGATCTTAGTTTCAATCCGTT 659
|||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GCTAGTCA-TAGTTTAAGTACGGCGAAACTGAAAACACTAGATCTTAATTTCAATCCGTT 659
Query 660 TTCAGATATTTCTCAACTTAAAGGTTTAGAAAGTCTCCGAGAGTTACTAGTCTTGATATT 719
|||||| ||||||||||||||||||||||||| |||| |||||||| |||||||| |||
Sbjct 660 GTCAGATTTTTCTCAACTTAAAGGTTTAGAAAGCCTCCAAGAGTTACAAGTCTTGAAATT 719
Query 720 ACGAGGCAATAAATTCAACCACACGCTATCTACTCATGCACTGAAAGATCTGAAAAAGTT 779
|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 720 ACGAGGAAATAAATTCAACCACACGCTATCTACTCATGTACTGAAAGATCTTAAAATGTT 779
Query 780 GCAAGAACTGGATCTCAGTGACAATGGGTTCACAAATTTGGATCTTGGCCGAGAAGT-GA 838
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||
Sbjct 780 GCAAGAACTGGATCTCAGTGACAATGGGTTCACAAATTTAGATCATGGCCGAGACGTTGA 839
Query 839 GGAGGAGT 846
||| |||
Sbjct 840 TGAG-AGT 846
Score = 1024 bits (554), Expect = 0.0
Identities = 603/627 (96%), Gaps = 2/627 (0%)
Strand=Plus/Plus
Query 997 TATTTAGGGATTTGCAGACTAATGAAACTCAGGGAACTGGATTTGAGCAGCAATGCTTTA 1056
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1051 TATTTAGGGATTTGCAGACTAATGAAACTCAGGGAGCTGGATTTGAGCAGCAATGCTTTA 1110
Query 1057 ACAAGTCTACCTTCTTGTTTGGGTAACTTAACGCATCTTCGAACTCTTGATCTATCGAAC 1116
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACAAGTCTACCTTATTGTTTGGGTAACTTAACGCATCTTCGAACTCTTGATCTATCGAAC 1170
Query 1117 AACCAATTGAATGGAAACCTGTCTTCCTTTGTGTCTGGTCTACCAACAGTTCTTGAGTAC 1176
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1171 AACCAATTGAATGGAAACCTGTCTTCCTTTGTGTCTGGTCTACCATCAGTGCTTGAGTAC 1230
Query 1177 TTGTCGCTGCTTGATAATAACTTCAACGGTTCGTTCTTATTCAACTCACTGGTCAATCAA 1236
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1231 TTGTCGCTGCTTGATAATAACTTCGACGGTTCGTTCTTGTTCAACTCACTGGTCAATCAA 1290
Query 1237 ACAAGACTCACAGTATTCAAATTGTCATCAAAAGTTGGTGTGATCCAAGTTCAGACGGAG 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1291 ACAAGACTCACAGTATTCAAATTGTCATCAAAAGTTGGTGTGATCCAAGTTCAGACTGAG 1350
Query 1297 AGTTCCTGGGCTCCATTGTTTCAATTGAAGATGTTACATTTGTCGAATTGCAATCTTGGC 1356
||||| |||||||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 1351 AGTTCATGGGCTCCATTGTTTCAATTGAAGATGTTATATTTATCGAATTGCAGTCTTGGC 1410
Query 1357 AGTACAATGC-CTGTCTTTCTCGTGCATCAGCATGACTTGTGCTTCGTTGATCTCTCTTA 1415
|| ||||||| | | ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1411 AGCACAATGCTCGG-CTTTCTCGTGCATCAGCGTGACTTGTGCTTCGTTGATCTCTCTCA 1469
Query 1416 TAACAAGTTGACAGGAACATTCCCAACGTGGCTTGTGAAGAATAACACAAGGCTGCAGAC 1475
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1470 TAACAAGTTGACAGGAACATTCCCGACTTGGCTTGTGAAGAATAACACAAGGCTGCAGAC 1529
Query 1476 TATTTTACTAAATGGGAACTCATTGACAAAGCTTCAACTACCTATGCTTGTTCACGGCTT 1535
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1530 TATTTTACTAAGTGGGAACTCATTGACAAAGCTTCAACTACCTATTCTTGTTCATGGCTT 1589
Query 1536 GCAAGTTCTCGATATCTCGAGTAATATGATATATGATTCGATTCAAGAAGACATAGGGAT 1595
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1590 GCAAGTTCTCGATATCTCGAGTAATATGATATATGATTCGATTCAAGAGGACATAGGGAT 1649
Query 1596 GGTGTTTCCAAACCTGAGGGTTATGAA 1622
||||||||||||||||||| |||||||
Sbjct 1650 GGTGTTTCCAAACCTGAGGTTTATGAA 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152658007549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5