BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470774
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta ... 2104 0.0
AT1G07470.1 | Symbols: | Transcription factor IIA, alpha/beta ... 1971 0.0
> AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta
subunit | chr1:2296023-2299470 REVERSE LENGTH=1972
Length=1972
Score = 2104 bits (1139), Expect = 0.0
Identities = 1368/1473 (93%), Gaps = 38/1473 (3%)
Strand=Plus/Plus
Query 1 CTCTCGATCTCTGATCTCTCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATCTCTCCCA 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 9 CTCTCGATCTCTGATCTCCCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATTTCTCCCA 68
Query 61 GACTCCGTCTTACCTCCT-C---CGAAA-TC-AGATTCCCGGAGGACG-AATTTGGTTTT 113
|||| ||||||||| ||| | ||||| | |||||||||||||||| |||| | ||||
Sbjct 69 GACT-CGTCTTACCGCCTCCGGTCGAAACCCTAGATTCCCGGAGGACGAAATTCGTTTTT 127
Query 114 TCGCCGGAGATTAAATTAAGGAGATTTGAGAGGCTGAGAAGATGGGTACAACTACGACAA 173
|||||||| | |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 128 TCGCCGGA-ACTAAATTAAGGAGATTTGAGAGGCT------ATGGGTACAACAACGACAA 180
Query 174 CGAGTGCTGTGTATATTCATGTTATCGAGGATGTCGTCAACAAAGTCCGAGAGGAGTTTA 233
| || ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 181 CAAGCGCTGTGTATATCCATGTTATCGAGGATGTCGTCAACAAAGTTCGTGAGGAGTTCA 240
Query 234 TTAACAACGGAGGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAACAACGGAGGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGA 300
Query 294 AGATGATGCAAGCTGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAA 353
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGATGATGCAAGCCGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAA 360
Query 354 CACCTGGAGGTCCATTGACTCATGATTTGAATGTTCCCTATGAAGGTACAGAGGAGTATG 413
||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 361 CACCTGGTGGTCCACTGACTCATGATTTGAATGTTCCTTATGAAGGTACAGAGGAGTACG 420
Query 414 AGACTCCCACTGCTGAAATGCTCTTTCCTCCGACACCATTGCAGACTCCCCTTCCAACGC 473
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 421 AGACTCCCACTGCTGAAATGCTCTTCCCTCCTACACCATTGCAGACTCCCCTTCCAACGC 480
Query 474 CGCTTCCGGGTACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATT 533
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGCTTCCCGGTACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATT 540
Query 534 ATACAACTCCTGGAACTGAGAATGGAGTCAACCTTGATGTTAAAGGAAGACCCAGTCCTT 593
|| | ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 541 ATCCCACTCCTGGAACTGAGAATGGAGTCAACATTGATGTTAAAGCAAGACCTAGTCCTT 600
Query 594 ATATGCCACCGCCTTCTCCGTGGGCAAATCCTAGACTTGATGTCAATGTTGCTTATGTGG 653
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 ATATGCCACCGCCTTCTCCGTGGACAAATCCTAGACTTGATGTCAATGTTGCTTATGTGG 660
Query 654 ATGGCCGTGATGAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGGCCGTGATGAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTG 720
Query 714 TGCCATCCTCTGGGAAACGAAAACGTGACGATTCTTCTGGACATTATCAAAATGGTGGAT 773
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 TGCCATCCTCTGGGAAACGAAAACGTGATGATTCTTCTGGACATTATCAAAATGGTGGAT 780
Query 774 CTATACCTCAACAGGATGGTGCAAGCGATACTATTCCTAAGGCAAACTTTGAGTGTGATA 833
||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||
Sbjct 781 CTATACCTCAACAGGATGGTGCAGGCGATGCTATCCCTGAGGCAAACTTTGAGTGTGATG 840
Query 834 CACTCCGCATAACCTCTGTTGGCGATAGAAAGGTCCCACGAGACTTCTTCTGCTCATCAT 893
|| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct 841 CATTCCGCATAACCTCTATTGGCGATAGAAAGGTACCACGAGACTTCTTCAGCTCATCAT 900
Query 894 CCAAGATTCCTCAAGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTGTCCACCC 953
| ||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 901 CGAAGATTCCTCAGGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTCTCTACAC 960
Query 954 CAAATATATACAGTTATCAAGGACCCAGTGAAGACTTTAACGAGGCCAGAACTCCTGCTC 1013
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 961 CAAATATATATAGTTATCAAGGACCCAGTGAAGAGTTTAACGAGGCCAGAACTCCTGCTC 1020
Query 1014 CAAACGACATCCAAACAAGCACTCCTGTTACTGTACAAAACAATATCGTTGAAGATGATG 1073
||||||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1021 CAAACGAGATCCAAACGAGCACTCCTGTTGCTGTACAAAACGATATCATTGAAGATGATG 1080
Query 1074 AAGAGCTGTTGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGAGCTGTTGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGG 1140
Query 1134 ATATGAACACGCAACATCTGGTTCTAGCTCAATTTGATAAGGTGACTCGCACAAAGAGCA 1193
|||||||||| ||||| |||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 1141 ATATGAACACACAACACCTGGTTTTAGCTCAATTTGACAAGGTGACGCGCACAAAGAGCA 1200
Query 1194 GGTGGAAGTGCAATCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCA 1253
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGTGGAAGTGCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCA 1260
Query 1254 ACAAAGCAACAGGCGAGTTCGACTTCTGATCTTGACACTAG-AA--ATGCTTTTAGAAAA 1310
|||||||| |||||||||| ||||||||||||| ||||||| || |||||| ||| |||
Sbjct 1261 ACAAAGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAGGAAA 1320
Query 1311 GTCACAGTCCTTCAAATGTTCAGTGTCTTTCTTTTTACCTTACGGTTTA-GA--GAC--A 1365
||| | | | ||||||| |||||||||||||||||||||| | |||| || ||| |
Sbjct 1321 GTC-C--T--T-CAAATGTCCAGTGTCTTTCTTTTTACCTTATGATTTAAGACCGACCGA 1374
Query 1366 T-GAT---T-A-T-TT-ATGGGAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAA 1417
|| | | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GAGAGACATGAGTATTCATGGGAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAA 1434
Query 1418 GATTTTTCCTGTCGAAGAAGGCGTATCAACTTT 1450
| |||||| ||||||||||||||||||||||||
Sbjct 1435 GTTTTTTC-TGTCGAAGAAGGCGTATCAACTTT 1466
> AT1G07470.1 | Symbols: | Transcription factor IIA, alpha/beta
subunit | chr1:2291457-2294588 FORWARD LENGTH=1538
Length=1538
Score = 1971 bits (1067), Expect = 0.0
Identities = 1343/1470 (91%), Gaps = 43/1470 (3%)
Strand=Plus/Plus
Query 8 TCTCTGATCTCTCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATCTCTCCCAGACTCCG 67
|||||| ||| |||| ||||||||||||||||| | ||||||| | ||||||||||
Sbjct 38 TCTCTG-TCT-TCTGAGTTCTGTCTACGCTTCGT---C-GCCGATCCCGGCCAGACTCCG 91
Query 68 TCTTACCTCCTCCGAAA-TC-AGATTCCCGGAGGACG-AATTTGGTTTTTCGCCGGAGAT 124
||||||| | | ||| | |||||||||||||||| |||| | |||||||||||| |
Sbjct 92 TCTTACCGGC-AC-AAACCCTAGATTCCCGGAGGACGAAATTCGTTTTTTCGCCGGA-AC 148
Query 125 TAAATTAAGGAGATTTGAGAGGCTGAGAAGATGGGTACAACTACGACAACGAGTGCTGTG 184
|||||||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 149 TAAATTAAGGAGATTTGAGAGGCT------ATGGGTACAACAACGACAACAAGCGCTGTG 202
Query 185 TATATTCATGTTATCGAGGATGTCGTCAACAAAGTCCGAGAGGAGTTTATTAACAACGGA 244
||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 203 TATATCCATGTTATCGAGGATGTCGTCAACAAAGTTCGTGAGGAGTTCATTAACAACGGA 262
Query 245 GGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGAAGATGATGCAA 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGAAGATGATGCAA 322
Query 305 GCTGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAACACCTGGAGGT 364
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 323 GCCGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAACACCTGGTGGT 382
Query 365 CCATTGACTCATGATTTGAATGTTCCCTATGAAGGTACAGAGGAGTATGAGACTCCCACT 424
||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 383 CCACTGACTCATGATTTGAATGTTCCTTATGAAGGTACAGAGGAGTACGAGACTCCCACT 442
Query 425 GCTGAAATGCTCTTTCCTCCGACACCATTGCAGACTCCCCTTCCAACGCCGCTTCCGGGT 484
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 443 GCTGAAATGCTCTTCCCTCCTACACCATTGCAGACTCCCCTTCCAACGCCGCTTCCCGGT 502
Query 485 ACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATTATACAACTCCT 544
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 503 ACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATTATCCCACTCCT 562
Query 545 GGAACTGAGAATGGAGTCAACCTTGATGTTAAAGGAAGACCCAGTCCTTATATGCCACCG 604
||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 563 GGAACTGAGAATGGAGTCAACATTGATGTTAAAGCAAGACCTAGTCCTTATATGCCACCG 622
Query 605 CCTTCTCCGTGGGCAAATCCTAGACTTGATGTCAATGTTGCTTATGTGGATGGCCGTGAT 664
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 CCTTCTCCGTGGACTAATCCTAGACTTGATGTCAATGTTGCTTATGTGGATGGCCGTGAT 682
Query 665 GAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTGTGCCATCCTCT 724
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 683 GAGCCTGAGAGAGGAAACTCTAATCAGCAGTTTACGCAGGATTTATTTGTGCCATCTTCT 742
Query 725 GGGAAACGAAAACGTGACGATTCTTCTGGACATTATCAAAATGGTGGATCTATACCTCAA 784
||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 743 GGGAAACGAAAACGTGATGATTCATCTGCACACTATCAAAATGGTGGATCTATACCTCAA 802
Query 785 CAGGATGGTGCAAGCGATACTATTCCTAAGGCAAACTTTGAGTGTGATACACTCCGCATA 844
|| ||||||||||||||| |||| ||| ||||||||||||| |||| | ||||||| |||
Sbjct 803 CAAGATGGTGCAAGCGATGCTATCCCTGAGGCAAACTTTGAATGTGCTGCACTCCGTATA 862
Query 845 ACCTCTGTTGGCGATAGAAAGGTCCCACGAGACTT-CTTCTGCTCATCATCCAAGATTCC 903
|||| |||||||||||||||| |||||||||| || || |||||||||| ||||||||
Sbjct 863 ACCTATGTTGGCGATAGAAAGATCCCACGAGATTTGATT-GGCTCATCATCGAAGATTCC 921
Query 904 TCAAGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTGTCCAC-CCCAAATATAT 962
|||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||
Sbjct 922 CCAAGTTGATGGGCCAATGCCTGACCCGTATGATGAAATGTTGTCCACACCC-AATATAT 980
Query 963 ACAGTTATCAAGGACCCAGTGAAGACTTTAACGAGGCCAGAACTCCTGCTCCAAACGACA 1022
|||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |
Sbjct 981 ACAGTTATCAAGGACCCAATGAAGAGTTTAATGAGGCCAGAACTCCTGCTCCAAACGAAA 1040
Query 1023 TCCAAACAAGCACTCCTGTTACTGTACAAAACAATATCGTTGAAGATGATGAAGAGCTGT 1082
||||||| |||||||||||| |||||| |||| ||||| |||||||||||||||||||||
Sbjct 1041 TCCAAACGAGCACTCCTGTTGCTGTACCAAACGATATCATTGAAGATGATGAAGAGCTGT 1100
Query 1083 TGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGGATATGAACA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGGATATGAACA 1160
Query 1143 CGCAACATCTGGTTCTAGCTCAATTTGATAAGGTGACTCGCACAAAGAGCAGGTGGAAGT 1202
| ||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1161 CACAACACCTGGTTTTAGCTCAATTTGACAAGGTGACGCGCACAAAGAGCAGGTGGAAGT 1220
Query 1203 GCAATCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAGCAA 1262
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAGCAA 1280
Query 1263 CAGGCGAGTTCGACTTCTGATCTTGACACTAGAAATGCTTTTAGAAAAGTCACAGTCCTT 1322
|||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||
Sbjct 1281 CAGGCGAGTTCGACTTCTGATCTTGACACTAGTAATGCTTCTAGGAAAGTCAGAGTCCTT 1340
Query 1323 CAAATGTTCAG-TGTCTTTCTTTTTACCTTACGGTTTAGA--GAC-----A-TGA----- 1368
||||||| | | ||||||||||| ||||||| | |||||| ||| | |||
Sbjct 1341 CAAATGT-CGGATGTCTTTCTTTGTACCTTATGATTTAGACCGACCTCCGAGTGAGAGAC 1399
Query 1369 -T--T-ATTTATGGGAA-AGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAAGATTTT 1423
| | ||||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1400 ATGATTATTTATGGGAATA-TGTACTCTGGTTGGCTTGTTGTACAAAAAGAACAGATTTT 1458
Query 1424 TCCTGTCGAAGAAGGCGTATCAACTTTGAC 1453
||| | |||||||||| |||||||||||||
Sbjct 1459 TCCGGCCGAAGAAGGCTTATCAACTTTGAC 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71636177715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5