BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470775
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07485.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 758 0.0
AT1G07490.1 | Symbols: RTFL3, DVL9 | ROTUNDIFOLIA like 3 | chr1... 473 6e-133
AT2G29125.1 | Symbols: RTFL2, DVL13 | ROTUNDIFOLIA like 2 | chr... 86.1 3e-16
> AT1G07485.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot
apex, embryo, leaf whorl, pedicel; EXPRESSED DURING: 4
anthesis, D bilateral stage; Has 5 Blast hits to 5 proteins
in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:2301375-2302121 FORWARD LENGTH=662
Length=662
Score = 758 bits (410), Expect = 0.0
Identities = 528/580 (91%), Gaps = 27/580 (5%)
Strand=Plus/Plus
Query 1 GTCTTATCAAAATTAATAGTAAATATATTATC--AAAAGAATCTCTTCTTACAATGTACT 58
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GTCTTATCAAAATTAATAGT-AATATATTATCAAAAAAGAATCTCTTCTTACAATGTACT 59
Query 59 AGTATGGAAACTTGTAGCAAACTTAGAGTAGAGAATCAAACTGATCTAATCATT----Ta 114
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 60 AGTATGGAAACTTGTGGC-AACTTAGAGTAGAGAATCAAACTGATCTAATCATTCAAAAA 118
Query 115 aa-a-aa-aaaaaTGCATGAGATC--TATCTACCTAGGAATCATGTTTATGCCAACATAC 169
|| | || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 AAGAGAATAAAAATGCATGAGATCTATATCTACCTAGGAATCATGTTTATGCCAACATAC 178
Query 170 AAGCATAGCCACACACCTTCTCATGATGTAAAAGAGGAAGAAGAAGAAGGCACTGAGCAT 229
||||||||||||||||||||||||||| | |||| || ||||| |||||||||||||||
Sbjct 179 AAGCATAGCCACACACCTTCTCATGATATTGAAGACGACGAAGATGAAGGCACTGAGCAT 238
Query 230 TTGGTGGATGAGCTTCGTAAGAATGCAGGAGCTTTTGAGGAGGAAGCACTTGTTGAGAAG 289
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 239 TTGGTGGATGAGCTCCGTACGAATGCAGGAGCTTTTGAGGAGGAAGCGCTTGTGGAGAAG 298
Query 290 CTTCTAGAGAATTTGGATTTAGATGAAGTTGAAGAAGAGGAACATGACGCAGCTAATGCA 349
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 299 CTTCTAGAGAACTTGGATTTAGATGAAGTTGAAGAAGATGAACACGACGCAGCTAATGCA 358
Query 350 TCCTTCTTCGACAGCTTCCATTTCTCGTCCATGTTTTGTGTTGCagaagagagagaaaga 409
||||| ||||||||| |||| ||||||||||| ||| |||||||||||||||||| ||
Sbjct 359 TCCTTTTTCGACAGCCTCCACTTCTCGTCCATCTTT-GTGTTGCAGAAGAGAGAGG--GA 415
Query 410 gagaATGAACTAGAGCTTCTGACTCAGATGGAGGGTCTCTGGtttttttGTTTTACTTTT 469
|||||||| |||||||||||||||||||||||| ||||||||| || || ||||||
Sbjct 416 GAGAATGA----GAGCTTCTGACTCAGATGGAGGGTTTCTGGTTTTATT-TT--ACTTTT 468
Query 470 AGTTTGATTGTGAGTTTGTGGTGATTGAGCTAGAAGgagagatggtgatctagagagaga 529
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 469 AGTTTGATTGTGAGTTTGTGGTGATTGAGCCAGAAGGAGAGATAGTGATCTAGAGAGA-- 526
Query 530 tggagagagagaga-AA-GGAAAGCAAAGAGAGGGATAGT 567
|||||||||||||| || || |||||||||||||||||||
Sbjct 527 TGGAGAGAGAGAGAGAAAGGGAAGCAAAGAGAGGGATAGT 566
> AT1G07490.1 | Symbols: RTFL3, DVL9 | ROTUNDIFOLIA like 3 | chr1:2301380-2302021
REVERSE LENGTH=642
Length=642
Score = 473 bits (256), Expect = 6e-133
Identities = 331/365 (91%), Gaps = 14/365 (4%)
Strand=Plus/Minus
Query 201 AAGAGGAAGAAGAAGAAGGCACTGAGCATTTGGTGGATGAGCTTCGTAAGAATGCAGGAG 260
|||| || ||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 353 AAGACGACGAAGATGAAGGCACTGAGCATTTGGTGGATGAGCTCCGTACGAATGCAGGAG 294
Query 261 CTTTTGAGGAGGAAGCACTTGTTGAGAAGCTTCTAGAGAATTTGGATTTAGATGAAGTTG 320
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 293 CTTTTGAGGAGGAAGCGCTTGTGGAGAAGCTTCTAGAGAACTTGGATTTAGATGAAGTTG 234
Query 321 AAGAAGAGGAACATGACGCAGCTAATGCATCCTTCTTCGACAGCTTCCATTTCTCGTCCA 380
||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 233 AAGAAGATGAACACGACGCAGCTAATGCATCCTTTTTCGACAGCCTCCACTTCTCGTCCA 174
Query 381 TGTTTTGTGTTGCagaagagagagaaagagagaATGAACTAGAGCTTCTGACTCAGATGG 440
| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 173 T-CTTTGTGTTGCAGAAGAGAGAG--GGAGAGAATG----AGAGCTTCTGACTCAGATGG 121
Query 441 AGGGTCTCTGGtttttttGTTTTACTTTTAGTTTGATTGTGAGTTTGTGGTGATTGAGCT 500
||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGGGTTTCTGG---TTTTATTTTACTTTTAGTTTGATTGTGAGTTTGTGGTGATTGAGCC 64
Query 501 AGAAGgagagatggtgatctagagagagatggagagagagaga-AA-GGAAAGCAAAGAG 558
|||||||||||| |||||||||||||| |||||||||||||| || || ||||||||||
Sbjct 63 AGAAGGAGAGATAGTGATCTAGAGAGA--TGGAGAGAGAGAGAGAAAGGGAAGCAAAGAG 6
Query 559 AGGGA 563
|||||
Sbjct 5 AGGGA 1
Score = 289 bits (156), Expect = 2e-77
Identities = 193/208 (93%), Gaps = 13/208 (6%)
Strand=Plus/Minus
Query 6 ATCAAAATTAATAGTAAATATATTATC--AAAAGAATCTCTTCTTACAATGTACTAGTAT 63
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 642 ATCAAAATTAATAGT-AATATATTATCAAAAAAGAATCTCTTCTTACAATGTACTAGTAT 584
Query 64 GGAAACTTGTAGCAAACTTAGAGTAGAGAATCAAACTGATCTAATCATTTaaaaaaa-a- 121
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 583 GGAAACTTGTGGCAA-CTTAGAGTAGAGAATCAAACTGATCTAATCATTCAAAAAAAGAG 525
Query 122 aa-a----TGCATGAGATCTAT--CTACCTAGGAATCATGTTTATGCCAACATACAAGCA 174
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 524 AATAAAAATGCATGAGATCTATATCTACCTAGGAATCATGTTTATGCCAACATACAAGCA 465
Query 175 TAGCCACACACCTTCTCATGATGTAAAA 202
||||||||||||||||||||||||||||
Sbjct 464 TAGCCACACACCTTCTCATGATGTAAAA 437
> AT2G29125.1 | Symbols: RTFL2, DVL13 | ROTUNDIFOLIA like 2 | chr2:12523342-12524109
FORWARD LENGTH=768
Length=768
Score = 86.1 bits (46), Expect = 3e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 151 CATGTTTATGCCAACATACAAGCATAGCCACACACCTTCTCATGATGTAAAA 202
||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 467 CATGTTTGTGCCAACAAACAAGCATAGCCACACACCTTCTCATGATGTAAAA 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5