BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470784
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07570.3 | Symbols: APK1A | Protein kinase superfamily prote... 1991 0.0
AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:1... 959 0.0
AT3G59110.1 | Symbols: | Protein kinase superfamily protein | ... 62.1 2e-08
> AT1G07570.3 | Symbols: APK1A | Protein kinase superfamily protein
| chr1:2331334-2333738 REVERSE LENGTH=1459
Length=1459
Score = 1991 bits (1078), Expect = 0.0
Identities = 1175/1222 (96%), Gaps = 5/1222 (0%)
Strand=Plus/Plus
Query 235 AGGGGCGAGTCCGAAGTATGACGCCAAAGATACT-GCAAGTCTTGGGAGCAAGGGTTCGT 293
||| |||||| ||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 233 AGGAGCGAGTACGAAGTATGACGCCAAAGATA-TAGGAAGTCTTGGGAGCAAGGCTTCGT 291
Query 294 CTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATCTTACAGTCTCCAAACCTCA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 292 CTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATCTTACAGTCTCCAAATCTCA 351
Query 354 AGAGTTTTAGCTTTGCTGACCTTAAATCCGCAACCAGGAATTTCAGACCAGACAGTGTGC 413
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 352 AGAGTTTTAGCTTTGCTGAGCTTAAATCAGCAACCAGGAATTTTAGACCAGACAGTGTGC 411
Query 414 TTGGTGAAGGTGGATTCGGTTGTGTGTTCAAAGGATGGATTGATGAGAAGTCTCTCACTG 473
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 412 TTGGTGAAGGTGGATTCGGTTGTGTTTTCAAAGGATGGATTGATGAGAAGTCTCTCACTG 471
Query 474 CCTCAAGACCAGGCACTGGTTTGGTTATTGCCGTCAAAAAGCTTAACCAAGATGGTTGGC 533
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CCTCAAGACCAGGCACGGGTTTGGTTATTGCCGTCAAAAAGCTTAACCAAGATGGTTGGC 531
Query 534 AAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTTGGTCAGTTTTCTCATGGTCACC 593
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 532 AAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTTGGTCAGTTTTCTCACCGTCACC 591
Query 594 TTGTGAAGCTGATCGGTTATTGCCTAGAGGATGAGCACCGTCTTCTTGTTTACGAGTTCA 653
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTGTGAAGCTGATTGGTTATTGCCTAGAGGATGAGCACCGTCTTCTTGTTTACGAGTTCA 651
Query 654 TGCCTCGGGGTAGCTTGGAGAATCATCTTTTCAGGAGGGGTTTGTACTTCCAACCGTTAT 713
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 652 TGCCTCGGGGTAGCTTGGAGAATCATCTTTTCAGGAGAGGTTTGTACTTCCAACCGTTAT 711
Query 714 CTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGCTGCAAAGGGCCTTGCTTTTCTTCACA 773
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 712 CTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGCTGCAAAGGGACTTGCTTTTCTTCACA 771
Query 774 GTTCCGAGACTAGAGTGATATACCGAGATTTCAAGACTTCTAATATCCTTCTTGACTCGG 833
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTTCCGAGACAAGAGTGATATACCGAGATTTCAAGACTTCTAATATCCTTCTTGACTCGG 831
Query 834 AGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCCAAGGATGGGCCAATAGGTGATAAAA 893
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 832 AGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCTAAGGATGGGCCAATAGGTGATAAAA 891
Query 894 GTCATGTCTCTACACGGGTCATGGGTACGCACGGATATGCAGCTCCCGAATACCTTGCAA 953
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 892 GTCATGTCTCTACACGAGTCATGGGTACACACGGATATGCAGCTCCTGAATACCTTGCAA 951
Query 954 CCGGTCATCTAACAACAAAGAGTGATGTCTATAGCTTTGGGGTTGTCCTTCTGGAGCTGT 1013
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 952 CCGGTCATCTAACAACAAAGAGTGATGTCTATAGCTTCGGGGTTGTCCTTCTGGAGCTGT 1011
Query 1014 TGTCTGGTCGTCGAGCCGTGGACAAGAACCGTCCATCCGGAGAGAGGAACCTTGTGGAGT 1073
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1012 TGTCTGGTCGTCGAGCAGTGGACAAGAACCGCCCATCTGGAGAGAGGAACCTTGTGGAGT 1071
Query 1074 GGGCTAAACCATACCTCGTAAACAAAAGGAAGATATTCAGAGTCATCGATAATCGTCTTC 1133
|||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 1072 GGGCTAAACCATACCTCGTAAACAAAAGAAAGATATTCCGAGTCATTGATAATCGTCTTC 1131
Query 1134 AGGACCAGTACTCTATGGAAGAAGCATGTAAAGTGGCTACTCTGTCTCTGAGATGTCTCA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGGACCAGTACTCTATGGAAGAAGCATGTAAAGTGGCTACTCTGTCTCTGAGATGTCTCA 1191
Query 1194 CCACAGAGATTAAGCTGAGACCAAACATGAGCGAGGTTGTTTCGCACCTCGAACACATTC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CCACAGAGATTAAGCTGAGACCAAACATGAGCGAGGTTGTTTCGCACCTCGAACACATTC 1251
Query 1254 AGTCTTTAAATGCTGCAATAGGGGGAAATATGGATAGAACAGAGAGAAGGATGCGTAGGA 1313
|||||||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||||||
Sbjct 1252 AGTCTTTAAATGCTGCTATAGGAGGAAATATGGATAAAACAGATAGAAGAATGCGTAGGA 1311
Query 1314 GAAGTGACAGTGTTGTCAGCAAAAAAGCAAATGCAGGTTTTGCTCGACAGACTGCTGTGG 1373
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1312 GAAGTGACAGTGTTGTCAGCAAAAAAGTGAATGCAGGTTTTGCTCGACAGACTGCTGTTG 1371
Query 1374 GCAGTACAGTTGTTGCTTATCCTCGCCCATCGGCCTCACCACTATATGTCTGAAGTAAG- 1432
||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| || |
Sbjct 1372 GCAGTACAGTTGTTGCTTATCCTCGCCCATCAGCCTCGCCACTGTATGTTTGAA-TAGGG 1430
Query 1433 TATAAACACGTCCCGTGTCTGT 1454
| ||||||||||| | ||||||
Sbjct 1431 T-TAAACACGTCCTGGGTCTGT 1451
Score = 187 bits (101), Expect = 3e-46
Identities = 115/121 (95%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 1 AGAAAGAGAAACAGAGAAAGGCGGGACCGATCCGCCATTAATGCTACCACCCAACTACAA 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 AGAAAGAGAAACAAAGAAAGGCGGGACCGATCCGCCATTAATGCTACCACCCAACTACAA 169
Query 61 CGCTTTTCTTCACACACTCTCTTCTCT-A-TCTCTTGGCTCAGAACAAAGAAAATAAAAA 118
|||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||
Sbjct 170 GGCTTTTCT-CACACACTCTCTTCTCTCAATCTCTTGGCTCAGAACAAAGAAGATAAAAA 228
Query 119 A 119
|
Sbjct 229 A 229
> AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:12424775-12426674
FORWARD LENGTH=1563
Length=1563
Score = 959 bits (519), Expect = 0.0
Identities = 934/1131 (83%), Gaps = 41/1131 (4%)
Strand=Plus/Plus
Query 293 TCTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATCTTACAGTCTCCAAACCTC 352
|||||||| | ||| ||| ||| ||||||| || |||||||| || ||||| || |||
Sbjct 318 TCTGTGTCAATCAGAACAAACCCAAGAACTGAAGGAGAGATCTTGCAATCTCCTAATCTC 377
Query 353 AAGAGTTTTAGC-TTTGCTGACCTTAAATCCGCAACCAGGAATTTCAGACCAGACAGTGT 411
|| ||||| | | |||||||| |||||| | ||||| |||||||| |||||||| |||||
Sbjct 378 AAAAGTTTCA-CTTTTGCTGAGCTTAAAGCAGCAACTAGGAATTTTAGACCAGATAGTGT 436
Query 412 GCTTGGTGAAGGTGGATTCGGTTGTGTGTTCAAAGGATGGATTGATGAGA-AGTCTCTCA 470
|||||||||||||| || |||| ||| |||||||| ||||||||||| | || |||| |
Sbjct 437 TCTTGGTGAAGGTGGTTTTGGTTCTGTTTTCAAAGGTTGGATTGATGA-ACAGACTCTTA 495
Query 471 CTGCCTC-AAGACCAGGCACTGGTTTGGTTATTGCCGTCAAAAAGCTTAACCAAGATGGT 529
|||| || || ||| || || ||| |||||||||| |||||||| |||||||||||||||
Sbjct 496 CTGCTTCTAA-ACCGGGAACCGGTGTGGTTATTGCTGTCAAAAAACTTAACCAAGATGGT 554
Query 530 TGGCAAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTTGGT-CAGTTTTCTCATGG 588
||||||||||||||||| |||||||| |||||||||||| |||| |||||||| |||
Sbjct 555 TGGCAAGGTCACCAGGAATGGCTGGCGGAAGTGAATTAC-TTGGGGCAGTTTTCGCATCC 613
Query 589 TCACCTTGTGAAGCTGATCGGTTATTGCCTAGAGGATGAGCACCGTCTTCTTGTTTACGA 648
| | |||||||| ||||| ||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 614 TAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGCATCGTCTTCTTGTTTATGA 673
Query 649 GTTCATGCCTCGGGGTAGCTTGGAGAATCATCTT-TTCAGGAGGGGTT-TGTACTTCCAA 706
|||||||||||| || ||||| ||||||||| || ||||| || |||| | || || |||
Sbjct 674 GTTCATGCCTCGTGGAAGCTTAGAGAATCAT-TTGTTCAGAAGAGGTTCT-TATTTTCAA 731
Query 707 CCGTTATCTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGCTGC-AAAGGGCCTTGCTTT 765
|| |||||||||| || ||||||||||||||||||||||| || ||||| | |||| ||
Sbjct 732 CCTTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGTGCAGCGAAAGGTC-TTGCGTT 790
Query 766 TCTTCACAGTTCCGAGACTAGAGTGATATACCGAGATTTCAAGACTTCTAATATCCTTCT 825
|||||| | |||||||||| || |||||||| |||||||| || || ||||| || ||
Sbjct 791 TCTTCATAACGCCGAGACTAGTGTCATATACCGCGATTTCAAAACGTCGAATATACTGCT 850
Query 826 TGACTCGGAGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCCAAGGATGGGCCAATAGG 885
||| ||||||||||| || |||||||||||||| ||| | || || || || |||| ||
Sbjct 851 TGATTCGGAGTACAATGCTAAGCTTTCTGATTTCGGGCTAGCTAAAGACGGTCCAACGGG 910
Query 886 TGATAAAAGTCATGTCTCTACACGGGTCATGGGTACGCACGGATATGCAGCTCCCGAATA 945
||||||||| ||||||||||| ||| |||||||||| ||||||| |||||||| |||||
Sbjct 911 TGATAAAAGCCATGTCTCTACGCGGATCATGGGTACTTACGGATACGCAGCTCCTGAATA 970
Query 946 CCTTGCAACCGGTCATCTAACAAC-AAAGAGTGATGTCTATAGCTTTGGGGTTGTCCTTC 1004
|||||||| |||||| ||||||| ||| |||||||||||||||| || ||||| |||
Sbjct 971 TCTTGCAACTGGTCATTTAACAACCAAA-AGTGATGTCTATAGCTACGGTGTTGTGCTTT 1029
Query 1005 TGGAGCTGTTGTCTGGTCGTCGAGCCGTGGACAAGAACCGTCCATCC-GGAGAG-AGGAA 1062
||||| |||||||||| || |||| || ||||||||||||||| || |||||| | ||
Sbjct 1030 TGGAGGTGTTGTCTGGACGGAGAGCTGTAGACAAGAACCGTCCA-CCAGGAGAGCAA-AA 1087
Query 1063 CCTTGTGGAGTGGGCTAA-ACCAT-ACCT-CGTAAACAAAAGGAAGATATTCAGAGTCAT 1119
|| ||||| ||||| || ||| | || | | ||| |||||||||| ||||| |||| ||
Sbjct 1088 GCTAGTGGAATGGGC-AAGACCGTTACTTGC-TAA-CAAAAGGAAGTTATTCCGAGTTAT 1144
Query 1120 CGATAATCGTCTTCAGGACCAGTACTCTATGGAAGAAGCATGTAAAGTGGCTACTCT-GT 1178
|||||| ||||| || || || ||||| ||||||||||| |||||||| |||||||| |
Sbjct 1145 CGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTGTAAAGTAGCTACTCTTG- 1203
Query 1179 CTCTGAGATGTCTCACCA--CAGAGATTAAGCTGAGACCAAACATGAGCGAGGTTGTTTC 1236
| |||||||| ||||| | | ||||| ||||||||||||||||||| ||||||||||||
Sbjct 1204 CGCTGAGATGCCTCAC-ATTC-GAGATAAAGCTGAGACCAAACATGAACGAGGTTGTTTC 1261
Query 1237 GCACCTCGAACACATTCAGTCTTTAAATGCTGCAATAGGGGGAAATATGGATA-GAAC-A 1294
|||||||||||||| || |||| |||| ||| ||| ||||||| |||| | | |
Sbjct 1262 TCACCTCGAACACATCCAAACTTTGAATGAAGCAGGAGGAAGAAATATTGATATGGTCCA 1321
Query 1295 GAGAGAAGGATGCGTAGGAGAAGTGACAGTGTTG-T--CAGCAAAAAAGCAAATGCAGGT 1351
||| || | |||||||||||||| || ||||||| | || | ||||| |||||||||||
Sbjct 1322 GAG-GA-GAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCAAAAACCAAATGCAGGT 1379
Query 1352 TTTGCTCGACAGACTGCTGTGGGCAGT-ACAGTTGTTGCTTATCCTCGCCC 1401
||||||||||| |||||||| ||| || | || | ||||||||| |||||
Sbjct 1380 TTTGCTCGACAAACTGCTGTAGGC-GTCATAGCTACTGCTTATCCACGCCC 1429
> AT3G59110.1 | Symbols: | Protein kinase superfamily protein
| chr3:21854719-21858204 FORWARD LENGTH=2417
Length=2417
Score = 62.1 bits (33), Expect = 2e-08
Identities = 49/57 (86%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 815 AATATCCTTCTTGACTCGGAGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCCAAG 871
|||||||| ||||| || | ||| ||||||||||||||||||||||||||||||
Sbjct 1482 AATATCCTGATTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAG 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5