BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470787
Length=2305
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07630.1 | Symbols: PLL5 | pol-like 5 | chr1:2349097-2351692... 3565 0.0
AT2G28890.1 | Symbols: PLL4 | poltergeist like 4 | chr2:1240559... 824 0.0
> AT1G07630.1 | Symbols: PLL5 | pol-like 5 | chr1:2349097-2351692
FORWARD LENGTH=2336
Length=2336
Score = 3565 bits (1930), Expect = 0.0
Identities = 2211/2340 (94%), Gaps = 45/2340 (2%)
Strand=Plus/Plus
Query 2 TGAACAATCAATCTCAGC-TTGAATTCTCCCAAATCCTCTATTGACTTT--G-A---AA- 53
|||||||||||||||||| |||| ||||||||||||||||||||||||| | | ||
Sbjct 6 TGAACAATCAATCTCAGCTTTGAGTTCTCCCAAATCCTCTATTGACTTTGCGAATCTAAG 65
Query 54 ATCCaa---aaa--aa-aa-----TTGATGGGTAACGGAGTCACAAAACTGAGTATATGT 102
| || ||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 66 AAAAAACTGAAATTAATAACGTTTTTGATGGGTAACGGAGTAACAAAACTGAGTATATGT 125
Query 103 TTCACAGGCGGCGGAGGAGGAGAACGTCTCCGGCAAAAAGACATCTCCGTTCTTCTTCCG 162
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 126 TTCACA---GGCGGTGGAGGAGAACGTCTCCGGCCAAAAGACATCTCCGTTCTTCTTCCG 182
Query 163 GATCCTTTAGACGAAGGTTTAGGTCACTCCTTCTGCTATGTCCGACCCGACCCGACTCTA 222
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 183 GATCCTTTAGACGAAGGTTTAGGTCACTCCTTCTGCTACGTCCGACCAGACCCGACTCTA 242
Query 223 ATCACTTCCTCAAAAGTCCATTCAGAGGAAGATACAACGACGACGGCGTTCCGTACAATC 282
|||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 243 ATCAGTTCCTCAAAAGTCCATTCAGAGGAAGACACAACGACGACAACGTTCCGTACAATC 302
Query 283 TCCGGCGCCTCCGTAAGCGCCAACACAGCAACTCCTCTCTCAACTTCTCTCTACGATCCC 342
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 303 TCCGGCGCTTCCGTTAGCGCCAACACAGCTACTCCTCTCTCAACTTCTCTCTACGATCCC 362
Query 343 TACGGTCACATCGATCGCGCCGCCGCATTCGAGAGCACGACGTCGTTTTCTTCAATCCCT 402
|||||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||||
Sbjct 363 TACGGTCACATCGACCGCGCCGCCGCATTCGAAAGCACGACTTCATTTTCGTCAATCCCT 422
Query 403 CTGCAGCCGATCCCCAAAAGCTCCGGTCCGATCGTTTTAGGTTCGGGTCCGATCGAAATA 462
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 423 CTTCAACCGATCCCCAAAAGCTCCGGTCCGATCGTTTTAGGCTCGGGTCCGATCGAAAGA 482
Query 463 GGGTTCCTTTCAGGTCCGATCGAAAGAGGATTCATGTCGGGTCCTCTTGATCGGGTCGGG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGGTTCCTTTCAGGTCCGATCGAAAGAGGATTCATGTCGGGTCCTCTTGATCGGGTCGGG 542
Query 523 TTATTCTCAGGTCCGCTTGATAAGCCAAACTCCGATAATCATCATCAGTTCCAACGTAGC 582
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 543 TTATTCTCAGGTCCGCTTGATAAGCCAAACTCAGATCATCATCATCAGTTCCAACGTAGC 602
Query 583 TTCTCTCATGGTTTAGCTTTACGGGTCGGGTCAAGAAAACGATCTTTAGTTCGGATCCTC 642
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 603 TTCTCTCATGGTTTAGCTTTACGGGTCGGGTCAAGAAAACGATCTTTGGTTCGGATCCTC 662
Query 643 CGTAGAGCAATCTCGAAGACGATGTCAAGAGGGCAAAACTCGATCGTTGCTCCGATCAAA 702
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CGTAGAGCAATCTCGAAAACGATGTCAAGAGGGCAAAACTCGATCGTTGCTCCGATCAAA 722
Query 703 TCAGTTAAAGATTCCGATAACTGGGGAATTAGGTCAGAAAAGAGCCGGAATTTGCACAAC 762
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCCGTTAAAGATTCCGATAACTGGGGAATTAGGTCAGAAAAGAGCCGGAATTTGCACAAC 782
Query 763 GAGAATCTCACAGTGAATAGCTTGAACTTTAGCAGCGAAGTAAGCTTAGACGACGACGTT 822
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 783 GAGAATCTCACAGTGAATAGCTTGAACTTTAGCAGCGAAGTTAGCTTAGACGACGACGTT 842
Query 823 TCACTCGAAAGCCAGAATCTTCAGTGGGCTCAGGGAAAAGCCGGTGAGGATCGAGTACAC 882
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TCACTCGAAAACCAGAATCTTCAGTGGGCTCAGGGAAAAGCCGGTGAGGATCGAGTACAC 902
Query 883 GTGGTGGTTTCTGAGGAACACGGGTGGCTCTTCGTCGGAATATACGATGGATTCAACGGT 942
||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 903 GTGGTTGTATCGGAGGAGCACGGGTGGCTCTTCGTCGGAATATACGACGGATTCAACGGT 962
Query 943 CCTGATGCGCCGGATTATCTTCTCTCTCATCTCTATCCTGT-GCTTCATCGGGAGCTCAA 1001
|| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 963 CCAGATGCGCCGGATTATCTTCTCTCTCATCTCTATCCTGTCG-TTCATCGAGAGCTCAA 1021
Query 1002 AGGCTTGTTATGGGACGATTCAAATGTCGAATCCAAATCTCAGGATCTCGAAAGGTCTAA 1061
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1022 AGGATTGTTATGGGACGATTCAAATGTCGAATCCAAATCTCAGGATTTAGAAAGGTCTAA 1081
Query 1062 CGAAGACGAATCTTGTTCAAATCAGGAAAAGAATGATACTTGTGAGCGATGGTGGAGATG 1121
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1082 CGGAGACGAATCTTGTTCAAATCAGGAAAAGGATGAGACTTGTGAGCGATGGTGGAGATG 1141
Query 1122 TGAATGGGATCGTGAAAGTCAAGATCTTGACCGTCGATTAAAGGAACAGATCAACCGGAG 1181
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1142 TGAATGGGATCGTGAAAGTCAAGATCTTGACCGTCGATTAAAGGAACAGATTAGTCGGAG 1201
Query 1182 AAGTGGGTCGGATCGGTTAACGAATCATTCGGAAGTTTTAGAGGCTCTGTCACAAGCTCT 1241
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1202 AAGTGGGTCGGATCGGTTAACGAATCATTCGGAAGTATTAGAGGCTCTGTCACAAGCTCT 1261
Query 1242 GAGGAAAACAGAGGAAGCGTATTTAGATACTGCAGATAAGATGCTCGACGAAAATCCTGA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GAGGAAAACAGAGGAAGCGTATTTAGATACTGCAGATAAGATGCTCGACGAAAATCCTGA 1321
Query 1302 ACTAGCTTTAATGGGTTCTTGTGTGCTTG-TGATGTTAATGAAAGGTGAAGATATTTATG 1360
||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1322 ACTAGCTTTGATGGGTTCTTGTGTT-TTGGTCATGTTAATGAAAGGTGAAGATATTTATG 1380
Query 1361 TGATGAATGTTGGTGATAGTAGAGCTGTGCTTGGTCAGAAATCAGAACCGGATTACTGGT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGATGAATGTTGGTGATAGTAGAGCTGTGCTTGGTCAGAAATCAGAACCGGATTACTGGT 1440
Query 1421 TAGCTAAGATAAGACAGGACTTGGAACGGATTAACGAAGAAACGATGATGAATGATTTGG 1480
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1441 TAGCTAAGATTAGACAGGATTTGGAACGGATTAACGAGGAAACGATGATGAATGATTTGG 1500
Query 1481 AAGGTTGTGAAGGAGATCAATCCTCTTTAGGCCCGAATTTATCGGCTTTTCAGCTCACTG 1540
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1501 AAGGTTGTGAAGGAGATCAATCATCTTTAGTCCCGAATTTATCGGCTTTTCAGCTCACTG 1560
Query 1541 TTGATCATAGCACAAATATAGAAGAAGAAGTTGAGAGGATCAGAAACGAGCATCCGGATG 1600
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1561 TTGATCACAGCACAAATATAGAAGAAGAAGTTGAGAGAATCAGAAACGAGCATCCCGATG 1620
Query 1601 ATGCTACCGCAGTGACGAATGAACGGGTTAAAGGCTCCTTGAAAG-TCACAAGAGCGTTT 1659
||| |||||| || |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1621 ATGTTACCGCGGTAACGAATGAACGGGTTAAAGGCTCCTT-AAAGGTCACAAGAGCGTTT 1679
Query 1660 GGTGCTGGTTTCCTAAAGCAGCCTAAATGGAACAATGCGCTTCTTGAGATGTTCCAAATT 1719
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1680 GGTGCTGGTTTCCTTAAGCAGCCTAAATGGAACAATGCACTTCTTGAGATGTTCCAAATT 1739
Query 1720 GATTACGTAGGGAAGTCTCCATACATCAACTGCTTACCGTCTCTGTACCACCACAGATTA 1779
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1740 GATTACGTTGGGAAGTCTCCATACATCAACTGCTTACCGTCTCTCTACCACCACAGATTA 1799
Query 1780 GGGTCGAAGGACAGGTTTCTAATACTATCATCGGATGGTCTCTACCAATACTTCACAAAC 1839
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GGGTCCAAGGACCGGTTTCTAATACTATCATCGGATGGTCTCTACCAATACTTCACAAAC 1859
Query 1840 GAAGAAGCGGTTTCAGAGGTTGAGCTCTTCATCACATTACAACCTGAAGGGGATCCAGCT 1899
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 GAAGAAGCTGTTTCAGAGGTTGAGCTCTTCATCACATTACAACCTGAAGGGGATCCAGCT 1919
Query 1900 CAACACGTTGTACAAGAGCTTTTGTTTAGAGCTGCTAAGAAAGCTGGTATGGATTTCCAT 1959
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 CAACACCTTGTGCAAGAGCTTTTGTTTAGAGCTGCTAAGAAAGCTGGTATGGATTTCCAT 1979
Query 1960 GAATTGCTAGAGATACCACAAGGTGAACGGAGACGGTATCACGATGATGTTTCAATAGTA 2019
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1980 GAATTGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTA 2039
Query 2020 GTGATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATaaaaaaaCAAATCCCTATGA 2079
||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 2040 GTGATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATAGAAAA-CAA-TCCCTATGA 2097
Query 2080 GCATAGACACAACAACAAATTGGTGTGTTCATGGAGAAAGAGATCGATCTCTCATCAACT 2139
||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2098 GCATACACACAAGAACAAATTGGTGTGTTCATGGAGACAGAGATCGATCTCTCATCAACT 2157
Query 2140 CTGAATCATGTACAATGTTGATa-aaa-a--aaa--------GTTTTGGCAACTATTTAG 2187
||||||||||||| ||||||||| ||| | ||| ||||||||||||| ||||
Sbjct 2158 CTGAATCATGTACTATGTTGATATAAACAGGAAATAAAAAAAGTTTTGGCAACTACTTAG 2217
Query 2188 ATGTCCAAGTGTATCATAAATTAGAGGTCAAATGTTTGGTTCTTTGAATGT--AAGTTTC 2245
|||||||| ||| |||||||||||| |||||| ||| |||||||||||||| |||||||
Sbjct 2218 ATGTCCAATTGTGTCATAAATTAGAAGTCAAAGGTT-GGTTCTTTGAATGTGTAAGTTTC 2276
Query 2246 TTCCAACTACTAACTGTATGTGAATAGAGAAGTAAATGAAGGAATTGAACGATGTTTGGT 2305
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2277 TTCCAACTACTAACTGTATGTGAATAGAGAAGTAAATGAAGGAATTGAAAGATGTTTGGT 2336
> AT2G28890.1 | Symbols: PLL4 | poltergeist like 4 | chr2:12405596-12408235
REVERSE LENGTH=2341
Length=2341
Score = 824 bits (446), Expect = 0.0
Identities = 725/857 (85%), Gaps = 29/857 (3%)
Strand=Plus/Plus
Query 1225 GCTCTGTCACAAGCTCTGAGGAAAACAGAGGAAGCGTATTTAGATACTGCAGATAAGATG 1284
||| ||||||||||| ||||||| || || ||||| ||||| || | |||||||| ||||
Sbjct 1302 GCTTTGTCACAAGCTTTGAGGAAGACGGAAGAAGCTTATTTGGAGAATGCAGATATGATG 1361
Query 1285 CTCGACGAAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTGCTT-GTGATGTTAATGAA 1343
||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct 1362 CTCGACGAAAATCCTGAACTAGCTTTAATGGGTTCTTGTGT-TTTGGTAATGTTGATGAA 1420
Query 1344 AGGTGAAGATATTTATGTGATGAATGTTGGTGATAGTAGAGCTGTGCTTGGTCAGAAATC 1403
|||||||||| ||||| |||||||||||||||||||||||||||| ||||| || ||| |
Sbjct 1421 AGGTGAAGATGTTTATTTGATGAATGTTGGTGATAGTAGAGCTGTTCTTGGGCAAAAAGC 1480
Query 1404 AGAACCG-GATTACTGG-TTAGCTAAGA-TAAGACAGGACTTGGAACGGATTAACGAAGA 1460
| | | ||||| ||| || | |||| ||| ||| || |||||||| || || |||||
Sbjct 1481 TG-AGAGTGATTATTGGATT-GGGAAGATTAA-ACAAGATTTGGAACGTATCAATGAAGA 1537
Query 1461 AACGATGATGAATGATTTGGAAGG-T-T-GTGAAGGAGATCAATCCT-CTTTAGG-CCCG 1515
||| | ||||||||||| || || | | |||| || || | || ||| || |||
Sbjct 1538 AAC--T-ATGAATGATTTTGATGGTTGTGGTGATGGTGAAGGA-GCTAGTTT-GGTTCCG 1592
Query 1516 AATTTATCGGCTTTTCAGCTCACTGTTGATCATAGCACAAATATAGAAGAAGAAGTTGAG 1575
| |||||| ||||||||||| ||||||||||||||||| ||| ||||||| |||||| |
Sbjct 1593 ACTTTATCAGCTTTTCAGCTTACTGTTGATCATAGCACTAATGTAGAAGAGGAAGTTAAT 1652
Query 1576 AGGA-TCAGAAACGAGCATCCGGATGATGCTACCGCAGTGACGAATGAACGGGTTAAAGG 1634
|| | || |||| |||||||| |||||||| | ||| || |||||||||||||||||||
Sbjct 1653 AGAATTC-GAAAGGAGCATCCTGATGATGCGAGCGCGGTTTCGAATGAACGGGTTAAAGG 1711
Query 1635 CTCCTTGAAAGTCACAAGAGCGTTT-GGTGCTGGTTTCCTAAAGCAGCCTAAATGGAACA 1693
|| ||||| ||||| ||||| ||| ||||| |||||||| ||||||||||||||||| |
Sbjct 1712 TTCGTTGAAGGTCACTAGAGC-TTTCGGTGCGGGTTTCCTTAAGCAGCCTAAATGGAATA 1770
Query 1694 ATGCGCTTCTTGAGATGTTCCAAATTGATTACGTAGGGAAGTCTCCATACATCAACTGCT 1753
| |||||||| |||||||| ||||| |||||| ||||| ||| ||||||||||| || |
Sbjct 1771 ACGCGCTTCTAGAGATGTTTCAAATCGATTACAAAGGGACGTCACCATACATCAATTGTT 1830
Query 1754 TACCGTCTCTGTACCACCACAGATTAGGGTCGAAGGA-CAGGTTTCTAATACTATCATCG 1812
| || || || ||||| || |||||||| ||||| || || |||||| ||||||||||||
Sbjct 1831 TGCCATCACTTTACCATCATAGATTAGGCTCGAAAGACCA-GTTTCTGATACTATCATCG 1889
Query 1813 GATGGTCTCTACCAATACTTCACAAACGAAGAAGCGGTTTCAGAGGTTGAGCTCTTCATC 1872
|||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1890 GATGGTCTTTACCAATATTTCACAAACGAAGAAGCGGTTTCAGAGGTTGAACTATTCATC 1949
Query 1873 ACATTACAACCTGAAGGGGATCCAGCTCAACACGTT-GTACAAGAGCTT-TTGTTTAGAG 1930
|| ||||| || ||||| || || ||||| ||| || || ||||||||| || || | |
Sbjct 1950 ACGTTACAGCCGGAAGGTGACCCGGCTCAGCAC-TTGGTTCAAGAGCTTCTT-TTCCGTG 2007
Query 1931 CTGCTAAGAAAGCTGGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGGA 1990
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 2008 CTGCTAAGAAAGCTGGTATGGATTTCCATGAACTGCTTGAGATACCACAAGGGGAACGGA 2067
Query 1991 GACGGTATCACGATGATGTTTCAATAGTAGTGATCTCTTTAGAAGGAAGAATGTGGAAAT 2050
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2068 GACGGTACCACGATGATGTTTCCATTGTAGTGATCTCTTTAGAAGGAAGAATGTGGAAAT 2127
Query 2051 CTTGTGTATaaa-aaaa 2066
|||||||||||| ||||
Sbjct 2128 CTTGTGTATAAACAAAA 2144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114407042055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5