BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470791
Length=3334
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane pro... 4896 0.0
> AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:2359673-2366447 REVERSE LENGTH=3231
Length=3231
Score = 4896 bits (2651), Expect = 0.0
Identities = 3047/3235 (94%), Gaps = 40/3235 (1%)
Strand=Plus/Plus
Query 95 ATTTTATTGTTTTGTATAGAAAAGATGATTTCCTTACATCGCATATATTTCATCATCGTC 154
|||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1 ATTTTATTATTTTGTATAGAAAAAATGATATATTTACATCGCATATATTTCATCATCGTC 60
Query 155 TTATTCACACTAACTTCCCATGGCCGTCTTGGATTTTCCGACAGCACTAAACTCCACGAG 214
| |||||||||| || |||||| |||||||| |||||||||| || |||||| ||||||
Sbjct 61 CTCTTCACACTAATTTTCCATGGGCGTCTTGGTTTTTCCGACAACAATAAACTTCACGAG 120
Query 215 GCCGAAGTGAGGGCATTAAAGGAGATAGGGAAGAAGCTAGGGAAGAAAGATTGGAACTTC 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GCCGAAGTGAGGGCATTAAAGGAGATAGGGAAGAAGCTAGGGAAGAAAGATTGGGACTTC 180
Query 275 AACAAAGATCCATGTAGTGGTGAAGGCAATTGGGTTGTAACAACTTACACAACCAAAGAG 334
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
Sbjct 181 AACAAAGATCCATGTAGTGGTGAAGGCACTTGGATTGTAACAACTTACACAACCAAAGGG 240
Query 335 TTTGAGAGTAATATCACTTGTGATTGCTCCTTTCTTCCTCCAAACTCTTCTTGCCACGTC 394
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TTTGAGAGTAATATCACTTGTGATTGCTCCTTTCTTCCTCAAAACTCTTCTTGCCACGTC 300
Query 395 ATT---A---G-AA------T-----AGCTCTGAAGTCGCAGAACTTAACAGGCATTGTC 436
||| | | || | ||||||||||||||||||||||||||||||||||
Sbjct 301 ATTAGAATTGGCAATTTGGTTGGCAGAGCTCTGAAGTCGCAGAACTTAACAGGCATTGTC 360
Query 437 CCTCCAGAATTCTCTAAGCTTCGCCACCTTAAAGTTTTAGACCTTAGCCGTAACTCCCTG 496
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 361 CCTCCAGAATTCTCTAAGCTTCGTCACCTTAAAGTTTTAGACCTAAGCCGTAACTCTCTG 420
Query 497 ACTGGTTCCATTCCAAAGGAATGGGCTTCGATGCGCTTGGAAGATTTATCCTTCATGGGG 556
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 421 ACTGGTTCCATTCCAAAGGAATGGGCTTCTATGCGCTTGGAAGATTTATCTTTCATGGGG 480
Query 557 AACCGATTGTCTGGTCCATTTCCGAAAGTCCTAACTCGCCTTACAATGCTCAAAAACTTG 616
||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||
Sbjct 481 AACCGATTGTCTGGTCCGTTTCCGAAAGTCCTGACCCGCCTTACAATGCTCAGAAACTTG 540
Query 617 AGCCTAGAAGGAAATCAGTTTTCAGGACCAATCCCTCCTGATATTGGAAAGTTAGTTCAT 676
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 541 AGCCTAGAAGGAAATCAGTTTTCAGGACCAATCCCTCCTGATATTGGACAGTTGGTTCAT 600
Query 677 TTGGAGAAACTTCATCTTCCTTCAAATGCTTTCACTGGTCCATTGACTGAAAAACTTGGA 736
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGGAGAAACTTCATCTCCCTTCAAATGCTTTCACTGGTCCATTGACTGAAAAACTTGGA 660
Query 737 TTGCTCAAGAACCTGACTGATATGAGGATAAGTGATAATAATTTCACTGGACCAATACCA 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCTCAAGAACCTGACTGATATGAGGATAAGTGATAATAATTTCACTGGACCAATACCA 720
Query 797 GATTTCATCGGCAATTGGACAAGAATAATGAAACTGCAGATGCATGGTTGCGGTTTGGAT 856
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GATTTCATCAGCAATTGGACAAGAATACTGAAACTGCAGATGCATGGTTGCGGTTTGGAT 780
Query 857 GGTCCGATACCTTCCAGTATTTCTACCTTAACAAGCTTGACCGACCTGAGGATTAGCGAC 916
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 781 GGTCCGATACCTTCCAGTATTTCTAGCTTAACAAGCTTGACCGACCTGAGAATTAGCGAC 840
Query 917 TTAGGAGGCAAACCGTCTTCCTTCCCTC-AGTTGAAGAATTTGGAGTCTATCAAGACGCT 975
|||||||||||||||||||||||||| | | | |||||||||||| ||||||||||||||
Sbjct 841 TTAGGAGGCAAACCGTCTTCCTTCCCCCCACT-GAAGAATTTGGAATCTATCAAGACGCT 899
Query 976 GATACTGAGAAAATGCAATTTAAATGGCCCAATTCCAAAATATATTGGGGA-TATGAAGA 1034
|||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||
Sbjct 900 GATACTGAGAAAATGCAAAATAATTGGCCCAATTCCAAAATATATTGGGGACT-TGAAGA 958
Query 1035 AGCTCAAAACACTTGACCTCAGTTTTAATCTCCTAAGTGGTGAGATTCCTTCATCGTTTG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGCTCAAAACACTTGACCTCAGTTTTAATCTCCTAAGTGGTGAGATTCCTTCATCGTTTG 1018
Query 1095 AAAATATGAAGAAAGCTGATTTCATTTATTTGACAGGAAACAAATTGACAGGAGGTGTTC 1154
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 AAAATATGAAGAAAGCCGATTTCATTTATTTGACAGGAAACAAATTGACAGGAGGGGTTC 1078
Query 1155 CAAACTACTTTGTCGAAAGAAACAAAAATGTAGATGTTTCTTTTAATAACTTTACTGATG 1214
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1079 CAAACTACTTTGTCGAAAGAAATAAAAATGTAGATGTTTCTTTTAATAACTTCACCGATG 1138
Query 1215 AAAGTTCAATTCCCAAAAATGGTGATTGTAACCGAGTTAGTTTTAATATGGTGGAAGGCT 1274
||||||||||||| | ||| | ||||||||||||| || ||| |||||||| |||
Sbjct 1139 AAAGTTCAATTCCTAGCCATG---ACTGTAACCGAGTTACTTCAAATTTGGTGGAAAGCT 1195
Query 1275 TCGCCTTG---AACAAGTCACACAAGAATTCAACCTGTTTTCTTCAGCACTTCCCTTGTG 1331
|||||||| ||||| ||||||||| |||||||||||||||||| | | | |||||||
Sbjct 1196 TCGCCTTGGGGAACAAATCACACAAGGGTTCAACCTGTTTTCTTCAACGCATGCCTTGTG 1255
Query 1332 TTCATCCTAAGAGACATCATATGTATAAATTGTACATAAATTGCGGAGGAGGTGAAGTAA 1391
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTCATCCTAAGAGATATCATTTATATAAATTGTACATAAATTGCGGAGGAGGTGAAGTAA 1315
Query 1392 AAGTGGATAAAGGAATAACATATCAGGCTGATGACGAACCCAAAGGTGCTTCTATGTACG 1451
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAGTGGATAAAGAAATAACATATCAGGCTGATGACGAACCCAAAGGTGCTTCTATGTACG 1375
Query 1452 TCCTTGGC---AA---GCACTGGGCGTTGAGCAGCACCGGGAACTTCATGGACAATGATG 1505
|||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCCTTGGCGCTAACAAGCGCTGGGCGTTGAGCAGCACCGGGAACTTCATGGACAATGATG 1435
Query 1506 ACGATGCTGATGATTATACTGTGCAGAACACATCCAGGCTATCAGTTAATGCTTCCTCTC 1565
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1436 ACGATGCTGATGAGTATACTGTGCAGAACACATCCAGGTTATCAGTTAATGCTTCCTCTC 1495
Query 1566 CCAGCTTTGGACTTTATAGGACTGCTCGAGTCTCTCCTTTATCGTTGACTTACTATGGAC 1625
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1496 CCAGCTTTGGACTTTATAGGACAGCTCGAGTCTCTCCTTTATCGTTGACTTACTACGGAA 1555
Query 1626 TTTGTCTCGGAAATGGGAACTACACTGTGAATCTCCACTTCGCTGAGATCATCTTTACTG 1685
| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1556 TCTGTCTTGGAAATGGGAACTACACTGTGAATCTCCACTTTGCTGAGATCATCTTTACCG 1615
Query 1686 ATGACAACACACTT-TACAGTCTCGGCAAACGTTTGTTCGATATTTATGTTCAGGATCAG 1744
||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1616 ATGACAATACA-TTATACAGTCTCGGCAAACGTTTGTTTGATATTTATGTTCAGGATCAG 1674
Query 1745 TTAGTGATTAAAAACTTTAACATTCAAGAAGCAGCTCGAGGATCAGGTAAGCCAGTCATA 1804
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1675 TTGGTGATTAAAAACTTTAACATTCAAGAAGCTGCTCGAGGATCAGGTAAGCCAATCATT 1734
Query 1805 AAATCGTTTCTGGTAAATGTAACGGACCATACTCTGAAGATCGGTTTGCGATGGGCTGGC 1864
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1735 AAATCGTTTCTGGTAAATGTAACGGACCATACTCTGAAGATTGGTTTGCGATGGGCTGGC 1794
Query 1865 AAAGGAACAACAGGCATTCCAATTAGAGGAGTATATGGTCCTATGATTTCAGCTATATCT 1924
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1795 AAAGGGACAACAGGCATTCCGATTAGAGGGGTATATGGTCCTATGATTTCAGCTATATCT 1854
Query 1925 GTGGAACCCAATTTCAAACCTCCGGTATATTATGACATAAAGGGTATCATACTAAAAGCG 1984
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1855 GTGGAACCCAATTTCAAACCTCCGGTATATTATGACACAAAGGATATCATACTAAAAGTG 1914
Query 1985 GGGGTACCTGTTGCTGCAGCAACACTTCTTTTGTTTATCATAGTGGGTGTATTCTTGaaa 2044
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1915 GGGGTACCTGTCGCTGCAGCAACACTTCTTTTGTTTATCATAGTGGGTGTATTCTGGAAA 1974
Query 2045 aaaaGACGTGACAAAAATGCTATTGATAAAGAGTTAAGGGGTTTAGATCTTCAAACTGGA 2104
||||| ||||||||||||| |||||| |||||| |||||||| |||||||||||||||||
Sbjct 1975 AAAAGGCGTGACAAAAATGATATTGACAAAGAGCTAAGGGGTCTAGATCTTCAAACTGGA 2034
Query 2105 ACTTTTACTCTACGACAGATAAAAGCAGCCACTGACAATTTTGATGTAACAAAAAAGATT 2164
|||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 2035 ACTTTTACTCTACGGCAGATAAAAGCAGCCACTGATAATTTCGATGTAACAAGAAAGATT 2094
Query 2165 GGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGAATTATCTGAGGGGAAATTAATCGCA 2224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2095 GGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGAATTATCTGAGGGGAAATTAATTGCA 2154
Query 2225 GTTAAACAGCTGTCTGCAAAATCGAGGCAGGGAAATCGCGAGTTTGTAAATGAGATAGGA 2284
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 GTTAAACAACTGTCTGCAAAATCGAGGCAGGGAAATCGCGAGTTTGTAAATGAGATAGGA 2214
Query 2285 ATGATCTCAGCTCTTCAACATCCAAATCTTGTGAAGCTATATGGATGTTGTGTTGAAGGA 2344
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2215 ATGATCTCAGCTCTTCAACATCCGAATCTTGTGAAGCTATATGGATGTTGTGTTGAAGGA 2274
Query 2345 AACCAATTGATATTGGTGTATGAGTATTTGGAGAACAACTGTCTATCTCGTGCGCTATTT 2404
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 2275 AACCAATTGATATTGGTGTATGAGTACTTGGAGAACAACTGTCTATCTCGAGCGTTATTT 2334
Query 2405 GGAAAGGATGAGAGTTCTAGACTGAAACTAGACTGGTCAACAAGGAAGAAGATATTTTTG 2464
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2335 GGAAAGGATGAGAGTTCTAGACTGAAACTAGACTGGTCAACAAGGAAGAAGATTTTTTTG 2394
Query 2465 GGGATAGCTAAAGGACTGACATTTCTCCATGAAGAATCTAGGATAAAGATTGTACACAGA 2524
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2395 GGGATAGCCAAGGGACTGACATTTCTCCATGAAGAATCTAGGATAAAGATTGTACACAGA 2454
Query 2525 GATATAAAGGCAAGCAACGTGTTACTCGATAAGGATCTCAACGCTAAAATTTCTGACTTT 2584
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 GATATAAAGGCAAGCAATGTGTTACTCGATAAGGATCTCAACGCTAAAATTTCTGACTTT 2514
Query 2585 GGTTTGGCAAAGCTGAACGATGATGGAAATACACACATCAGCACTCGTATTGCAGGAACT 2644
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2515 GGTTTGGCAAAGCTGAATGATGATGGAAACACACACATCAGCACTCGTATTGCAGGAACT 2574
Query 2645 ATAGGTTATATGGCTCCCGAGTATGCGATGCGTGGCTACCTGACTGAAAAAGCGGATGTT 2704
||||||||||||||||| || ||||| |||||||| ||| ||||||||||||||||||||
Sbjct 2575 ATAGGTTATATGGCTCCTGAATATGCAATGCGTGGTTACTTGACTGAAAAAGCGGATGTT 2634
Query 2705 TATAGCTTTGGCGTCGTTGCACTCGAAATCGTGAGTGGAAAGAGTAACACAAACTTTAGG 2764
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2635 TATAGCTTCGGCGTCGTTGCACTCGAAATCGTTAGTGGAAAGAGTAACACAAACTTTAGG 2694
Query 2765 CCAACCGAGGACTTTGTTTACCTTCTTGATTGGGCTTACGTTTTGCAAGAGAGGGGAAGC 2824
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2695 CCAACCGAGGACTTTGTTTACCTTCTTGATTGGGCTTACGTTTTGCAAGAGAGAGGAAGC 2754
Query 2825 TTACTAGAGCTGGTTGATCCAACGTTAGTCTCAAATTACTCAGAAGAGGAAGCCATGCTG 2884
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 2755 TTACTAGAGCTGGTTGATCCAACGTTAGCCTCAGATTACTCAGAAGAGGAAGCCATGTTG 2814
Query 2885 ATGCTGAACGTGGCATTGATGTGCACTAGCGCGTCACCGACGCTAAGGCCTACAATGTCA 2944
|||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 2815 ATGCTGAACGTGGCATTGATGTGCACTAACGCATCACCGACTCTAAGGCCTACAATGTCG 2874
Query 2945 CAGGTGGTGAGTCTCTTAGAGGGAAAGACAGCGATGCAAGAGTTGCTGTCGGATCCGAGC 3004
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2875 CAGGTGGTGAGTCTCATAGAGGGGAAGACAGCGATGCAAGAGTTGCTGTCGGATCCGAGC 2934
Query 3005 TTCTCAACGGTTAACCCGAAGCTTAAAGCCTTAAGGAACCATTTTTGGCAAAACGAGCTG 3064
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2935 TTCTCAACGGTTAACCCGAAGCTTAAAGCCTTGAGGAACCATTTTTGGCAAAACGAGCTG 2994
Query 3065 AGCAGATCACTTAGCTTCTCCACAAGCGGGCCTCGTACTGGCTCTGCTAACTCACTCGTT 3124
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2995 AGCAGATCGCTTAGCTTCTCCACAAGCGGGCCTCGTACTGCCTCTGCTAACTCACTCGTT 3054
Query 3125 GATGCTGAGGAGAAAACTGGACTTTTGGATTAGGTTCTTAAAATTCCaaaaaaaTTAGTG 3184
||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 3055 GATGCAGAGGAGAAAACCGGACTTTTGGATTAAGTTCTTAAAATTCCAAATTT-TTAGTG 3113
Query 3185 AGATTCGTGGGAGTGGTGAAGTTTTCACCAATAAAAAAGAGTTTGCTTTCAAGTGTATAT 3244
| ||||| | |||| |||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 3114 AAATTCGCGAGAGTAATGAAGTTTTCACCAATGAAAA-GAGTTTGCTTTTAAGTGTATAT 3172
Query 3245 ATAGTTGGAAGTTCTTTAGCTCGAAATAGTGTTATATGAAC-AAGATTGATCTCA 3298
|||||||||||||||||||||| |||||||||||||||||| || | ||||||||
Sbjct 3173 ATAGTTGGAAGTTCTTTAGCTCAAAATAGTGTTATATGAACTAA-AGTGATCTCA 3226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165902080501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5