BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470793
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07660.1 | Symbols: | Histone superfamily protein | chr1:23... 556 5e-158
AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:24... 540 5e-153
AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24... 337 6e-92
> AT1G07660.1 | Symbols: | Histone superfamily protein | chr1:2368837-2369734
FORWARD LENGTH=717
Length=717
Score = 556 bits (301), Expect = 5e-158
Identities = 313/319 (98%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 42 AAGAGATGTCaggaagaggaaagggaggaaaaggattgggaaagggaggagcgaagaggc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAGGC 249
Query 102 acaggaaggttctgagggaTAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTG 161
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 250 ACAGGAAGGTTCTGAGGGATAACATTCAAGGAATCACCAAGCCTGCTATTCGTCGTCTTG 309
Query 162 CTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC 369
Query 222 TCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA 281
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 370 TCAAGATCTTCCTCGAGAATGTTATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA 429
Query 282 GGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCT 341
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 430 GGAAGACGGTGACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCT 489
Query 342 ACGGTTTCGGCGGTTAATC 360
|||||||||| ||||||||
Sbjct 490 ACGGTTTCGGAGGTTAATC 508
> AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:2421218-2421943
REVERSE LENGTH=726
Length=726
Score = 540 bits (292), Expect = 5e-153
Identities = 314/325 (97%), Gaps = 0/325 (0%)
Strand=Plus/Plus
Query 36 ACTGTGAAGAGATGTCaggaagaggaaagggaggaaaaggattgggaaagggaggagcga 95
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ACTGTGAAGTGATGTCGGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGA 246
Query 96 agaggcacaggaaggttctgagggaTAACATTCAAGGTATCACCAAGCCTGCTATTCGTC 155
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 247 AGAGGCACAGGAAGGTTCTGAGGGATAACATTCAAGGAATCACCAAGCCTGCCATTCGTC 306
Query 156 GTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAG 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAG 366
Query 216 GTGTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACG 275
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 367 GTGTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACTTACACTGAGCACG 426
Query 276 CCAGGAGGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCA 335
| || |||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 427 CTAGAAGGAAGACGGTGACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTA 486
Query 336 CTCTCTACGGTTTCGGCGGTTAATC 360
|||||||||||||||| ||||||||
Sbjct 487 CTCTCTACGGTTTCGGAGGTTAATC 511
> AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24051552-24052143
FORWARD LENGTH=592
Length=592
Score = 337 bits (182), Expect = 6e-92
Identities = 276/322 (86%), Gaps = 4/322 (1%)
Strand=Plus/Plus
Query 40 TGAAGAGATGTCaggaagaggaaagggaggaaaaggattgggaaagggaggagcgaagag 99
|||| | ||||| || | ||||||||||||||||| ||||| ||||||||||| ||| |
Sbjct 91 TGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGCG 150
Query 100 gcacaggaaggttctgagggaTAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCT 159
||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| | |
Sbjct 151 TCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAG-AT 209
Query 160 T-GCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGAC-CAGAGGT 217
| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | | ||
Sbjct 210 TGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTC-GTGGC 268
Query 218 GTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCC 277
|||||||||||||| |||||||| || || ||||| || || || ||||| ||||||||
Sbjct 269 GTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCT 328
Query 278 AGGAGGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACT 337
||||||||||| ||||| ||||||||||||||||||||| | |||||||||||| | |||
Sbjct 329 AGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACT 388
Query 338 CTCTACGGTTTCGGCGGTTAAT 359
|| ||||| ||||| |||||||
Sbjct 389 CTTTACGGATTCGGTGGTTAAT 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5