BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470795
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 680 0.0
> AT1G07680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G23903.1); Has
7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:2376012-2377186
FORWARD LENGTH=702
Length=702
Score = 680 bits (368), Expect = 0.0
Identities = 596/697 (86%), Gaps = 52/697 (7%)
Strand=Plus/Plus
Query 1 CTCCGGTTAACGTAAGAATACTGATCATTTATCATATTTTCTAGACCTAACTATGTTCTC 60
||||||||||||||| || |||||||| ||||| ||||||||||| ||| ||||||||
Sbjct 2 CTCCGGTTAACGTAAAAAGACTGATCA---ATCATCTTTTCTAGACCCAACAATGTTCTC 58
Query 61 GCTCCGTACCCTTCTTGTTATACTTCTCTTTGCTTTGATAGCAATTGTTGGATCCATCAA 120
||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 59 GCTCCGTACCCTTGTTGTTCTACTTCTCTTCACTTTGATAGCTATTGTTGGATCCATCAA 118
Query 121 TGGGGAACCGGGGTGTG-GTGGT--TCATCTCCCACCTGGGAAGACTTGCACGACGAACA 177
||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 119 TGGAGAACCGGGGTGTGATTCATCATCATCTCCCACCTGGGAAGACTTGCACGACGAACA 178
Query 178 AGCGCAACGAAA-TTTGGACAATGCAGACAAGTTTGGTAGGATCACTCTTGATTGTGAAA 236
||| | || ||| | | ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 179 AGCACGAC-AAAGTCTAGACAATGCAGATAAGTTTGGTAGGATCACTCTTAATTGTGAAA 237
Query 237 CTACTGGTGGTGGAGGCAACGGTGCAAACAACGGTTTCGTGACGATTATAGACCTATCCT 296
|||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 238 CTACTGTTGGTGGAGGCAACGGTGGAAACAACGGTTTCGTGACGATTATAGACTTAGCCG 297
Query 297 TTGGTCTCTTCttttttatttttGTCGCCATTGGAATCTGGTTTTTCTGCGTCCGAAGAC 356
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 298 TTGGTCTCTTCTTTCTTATTCTTGTCGCCATTGGAATCTGGTTTTGCTGCGTCAGAAGAC 357
Query 357 AAAAGGCCATCAACGCAGCTATTGT-TAACTCCTCTCCAGGACAAGTGGGAGCTAAAGGG 415
|||||| || |||||||||||||| || |||| |||||||||| |||||||||||| |
Sbjct 358 AAAAGGTTATGAACGCAGCTATTGTCCAA-TCCTATCCAGGACAATTGGGAGCTAAAGAG 416
Query 416 AAGGGCTATGGAATGGATGAGAAGACGAAAACAGTTGCCATGACCATGGGTGCTCCAGCA 475
| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 417 ATGGGCTATGGAATGGACGGGAAGACGAAAACAGTTGCCATGACCATGAGTGCTCCAGCA 476
Query 476 GGAAAGCTTTCAAATGGTGACACCAATGTTTGAAA-A-TGTTTGAT-A--CAAATAT--- 527
||||||||||||||||||||||||||||||||||| | | ||||| | |||| ||
Sbjct 477 GGAAAGCTTTCAAATGGTGACACCAATGTTTGAAACAATAATTGATCAAACAAAAATGTT 536
Query 528 --A--CAATAATTGAATTCTCTTGATTT-------C-tt-t-----ttttG------CTA 563
| |||||||| |||||||||||||| | || | ||||| |||
Sbjct 537 TGAAACAATAATTAAATTCTCTTGATTTTTTTTTTCCTTGTCAAGATTTTGTTTTTGCTA 596
Query 564 TA-GATGATATGATGATCGT----CTCTGCTGTTGTCGTCCTTACATTACACATAGTTTC 618
|| | ||||||||||||| | ||||| |||||||||| |||||||||||| | ||||
Sbjct 597 TAAG-TGATATGATGATCTTTAATCTCTGTTGTTGTCGTCGTTACATTACACACAATTTC 655
Query 619 AAAAGCTTGTGTAACTAAATACTTT-ATTATCTTTAA 654
|||||||||| ||||||||||||| || ||||||||
Sbjct 656 AAAAGCTTGT--AACTAAATACTTTGAT-ATCTTTAA 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5