BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470808
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07750.1 | Symbols: | RmlC-like cupins superfamily protein ... 1881 0.0
AT2G28680.1 | Symbols: | RmlC-like cupins superfamily protein ... 1129 0.0
> AT1G07750.1 | Symbols: | RmlC-like cupins superfamily protein
| chr1:2404037-2405943 REVERSE LENGTH=1414
Length=1414
Score = 1881 bits (1018), Expect = 0.0
Identities = 1211/1302 (93%), Gaps = 22/1302 (2%)
Strand=Plus/Plus
Query 1 AAACCTTTTGTTCTTTACTCTTTTCCATCGTCGAGAAAAAATGGAGTTGGATCTTTCACC 60
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 41 AAATCTTTTCTTCTTTACTCTTTTTCATCGTCGAGAAAAAATGGAGTTGGATCTTACACC 100
Query 61 GAAGCTGCCGAAAAAGGTTTACGGAGGAGATGGTGGATCTTACTTTGCGTGGTGCCCAGA 120
||| |||| || ||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 101 TAAGTTGCCCAAGAAGGTTTACGGAGGAGATGGTGGATCTTACTCTGCCTGGTGCCCAGA 160
Query 121 AGAGTTGCCGATGCTTAAACATGGTAACATTGGAGCCGCTAAGCTTGCTCTTGAGAAGCA 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 161 GGAGTTGCCGATGCTCAAACAGGGTAACATTGGAGCCGCTAAGCTTGCTCTTGAGAAGAA 220
Query 181 TGGCTTCGCTATCCCTCGTTACTCTGATTCCTCTAAGGTCGCTTATGTTCTTCAAGGATC 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TGGCTTCGCTGTCCCTCGTTACTCTGATTCCTCTAAGGTCGCTTATGTTCTTCAAGGATC 280
Query 241 TGGAACTGCTGGAATTGTTCTCCCAGAGCAGGAGGAGAAGGTGATCGCAATCAAGCAAGG 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 281 TGGAACTGCTGGAATTGTTCTCCCAGAGAAGGAGGAGAAGGTGATCGCAATCAAGCAAGG 340
Query 301 TGATTCGATTGCTCTTCCCTTTGGTGTGGTCACATGGTGGTTCAACAACGAGGATGCTGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 341 TGATTCGATTGCTCTTCCCTTTGGTGTGGTCACATGGTGGTTCAACAACGAGGATCCTGA 400
Query 361 GCTTGTTATCCTCTTCCTTGGTGAAACCCACAAGGGTCACAAAGCAGGACAGTTCACTGA 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 401 GCTTGTTATCCTCTTCCTTGGTGAAACCCACAAGGGTCACAAAGCAGGGCAGTTCACTGA 460
Query 421 GTTCTATCTCACTGGCTCAAACGGTATCTTCACTGGTTTCTCCACTGAGTTTGTAAGCAG 480
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 461 GTTCTATCTTACTGGCACAAACGGTATCTTCACTGGTTTCTCCACTGAGTTTGTTGGCAG 520
Query 481 AGCCTGGGATCTTGATGAGAACACCGTGAAGAAACTCGTTGGTTCTCAAACCGGTAATGG 540
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 521 AGCCTGGGACCTTGATGAGAACACCGTGAAGAAACTTGTTGGTTCTCAAACCGGTAATGG 580
Query 541 TATTGTGAAGCTTGATGCGAGCGTCAAGATGCCACAGCCCAAGAAGGAGCACCGTGATGG 600
|||||||||||||||||| || | |||||||||||||||||| ||||| |||||| |||
Sbjct 581 CATTGTGAAGCTTGATGCGGGCTTTAAGATGCCACAGCCCAAGGAGGAGAACCGTGCTGG 640
Query 601 GTTTGTCTTGAACTGTTTGGAGGCTCCTCTTGATGTTGACATCAAGGATGGAGGCAGAGT 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 641 GTTTGTCTTGAACTGTTTGGAGGCTCCTCTTGATGTAGACATCAAGGATGGAGGCAGGGT 700
Query 661 CGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGGAGAGGTTGGGTTTGGAGCTGATCT 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 701 CGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGGAGAGGTTGGCTTTGGAGCTGATCT 760
Query 721 TGTGAGGATTGATGGACATTCCATGTGTTCGCCTGGTTTCTCTTGTGACTCTGCTCTTCA 780
||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TGTTCGGATCGATGCACACTCCATGTGTTCGCCTGGTTTCTCTTGTGACTCTGCTCTTCA 820
Query 781 GGTGACTTACATTGTGGGTGGAAGTGGAAGAGTCCAGGTGGTTGG-GGCTGATGGGAAAA 839
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 821 GGTGACTTACATTGTGGGTGGAAGTGGAAGAGTCCAGGTGGTTGGTGG-TGATGGGAAAA 879
Query 840 GAGTTCTTGAGACTCATATCAAAGCTGGTTCTCTCTTCATTGTTCCAAGGTTCTTTGTGG 899
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAGTTCTTGAGACCCATATCAAAGCTGGTTCTCTCTTCATTGTTCCAAGGTTCTTTGTGG 939
Query 900 TGTCTAAGATTGCTGATTCTGATGGCATGTCTTGGTTCTCCATTGTCACCACTCCTGATC 959
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TTTCTAAGATTGCTGATGCTGATGGCATGTCTTGGTTCTCCATTGTCACCACTCCTGATC 999
Query 960 CAATCTTCACACATTTGGCCGGAAAGACATCGGTGTGGAAGGCTTTGTCACCTGAGGTTT 1019
| |||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||
Sbjct 1000 CGATCTTCACACATTTGGCCGGGAATACATCGGTGTGGAAGTCTTTGTCCCCTGAGGTTT 1059
Query 1020 TGCAGGCGGCGTTTAAGGTTGATCCGGATGTGGAGAAGTCCTTCCGATCAAAGAGGACTT 1079
||||||| ||||||||||| | |||||| |||||||||||||||||||| | ||||||||
Sbjct 1060 TGCAGGCAGCGTTTAAGGTGGCTCCGGAGGTGGAGAAGTCCTTCCGATCCACGAGGACTT 1119
Query 1080 CAG-ACGCCATTTTCTTCCCTCCATCCAACTGAAGAAGTAGAAGTAATGAGAACAAGAAC 1138
|| | ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1120 CATCA-GCCATTTTCTTCCCTCCTTCCAACTGAAGAAGGAGAAG-AATGAGAACAAGAAC 1177
Query 1139 CAGctttcatcttttatcttttatctttgttgctttccctcagagatttttgagggttt- 1197
||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1178 CAGCTTTTATCTTTTATCGTTT------GTTGCTTTCCCTCAGAGATTTTTGAGGGTTTT 1231
Query 1198 --cttttcttgTGATTCAAGGAA-TATTCTTAGTCTAGTGTTTTTAGTGGT-T-C--GA- 1249
||||||||||||||||||||| | ||||||||||||| | |||| | | | | |
Sbjct 1232 TACTTTTCTTGTGATTCAAGGAAGT-TTCTTAGTCTAGT-TGTTTAATTCTCTTCCTGCC 1289
Query 1250 TTCTCTTCCTGGACCGGTTCTTGTTCTCTTTGTTAAAAAATA 1291
|| || ||||||||||||||||||||| ||||| ||||||
Sbjct 1290 TTTTCCCCCTGGACCGGTTCTTGTTCTCGTTGTTTTAAAATA 1331
> AT2G28680.1 | Symbols: | RmlC-like cupins superfamily protein
| chr2:12302963-12304799 REVERSE LENGTH=1278
Length=1278
Score = 1129 bits (611), Expect = 0.0
Identities = 921/1074 (86%), Gaps = 8/1074 (1%)
Strand=Plus/Plus
Query 40 AATGGAGTTGGATCTTTCACCGAA-GCTGCCGAAAAAGGTTTACGGAGGAGATGGTGGAT 98
|||||| |||||||| ||||| || ||| ||||||||||| ||||||||||| ||||| |
Sbjct 52 AATGGAATTGGATCTATCACC-AAGGCTCCCGAAAAAGGTGTACGGAGGAGACGGTGGTT 110
Query 99 CTTACTTTGCGTGGTGCCCAGAAGAGTTGCCGATGCTTAAACATGGTAACATTGGAGCCG 158
| |||||||| |||||||| ||||||||||| ||||| | |||||||||||||||||
Sbjct 111 CGTACTTTGCATGGTGCCCTGAAGAGTTGCCAATGCTCCGAGATGGTAACATTGGAGCCT 170
Query 159 CTAAGCTTGCTCTTGAGAAGCATGGCTTCGCTATCCCTCGTTACTCTGATTCCTCTAAGG 218
||||||| |||||||||||| ||||||| ||| | ||||| |||||||| ||| | ||||
Sbjct 171 CTAAGCTCGCTCTTGAGAAGTATGGCTTGGCTCTTCCTCGCTACTCTGACTCCCCCAAGG 230
Query 219 TCGCTTATGTTCTTCAAGGATCTGGAACTGCTGGAATTGTTCTCCCAGAGCAGGAGGAGA 278
|||||||||||||||||||| ||||||| |||||||| || ||||| ||| |||||||||
Sbjct 231 TCGCTTATGTTCTTCAAGGAGCTGGAACAGCTGGAATCGTGCTCCCTGAGAAGGAGGAGA 290
Query 279 AGGTGATCGCAATCAAGCAAGGTGATTCGATTGCTCTT-CCCTTTGGTGTGGTCACATGG 337
| ||||| ||||||||| |||| || || || ||| || || |||||||| || ||||||
Sbjct 291 AAGTGATAGCAATCAAGAAAGGAGACTCCATAGCT-TTACCTTTTGGTGTAGTGACATGG 349
Query 338 TGGTTCAACAACGAGGATGCTGAGCTTGTTATCCTCTTCCTTGGTGAAACCCACAAGGGT 397
||||||||||| ||||| ||||||| || | |||||||||||||| || |||||||||
Sbjct 350 TGGTTCAACAATGAGGACACTGAGCTAGTCGTTCTCTTCCTTGGTGAGACTCACAAGGGT 409
Query 398 CACAAAGCAGGACAGTTCACTGAGTTCTATCTCACTGGCTCAAACGGTATCTTCACTGGT 457
|||||||| ||||||||||| || || || || || || || || || |||||||| |||
Sbjct 410 CACAAAGCTGGACAGTTCACCGACTTTTACCTAACCGGATCCAATGGAATCTTCACCGGT 469
Query 458 TTCTCCACTGAGTTTGTAAGCAGAGCCTGGGATCTTGATGAGAACACCGTGAAGAAACTC 517
||||| ||||||||||| ||||||| |||||||| ||||||| |||||||||||| ||
Sbjct 470 TTCTCTACTGAGTTTGTTGGCAGAGCTTGGGATCTCGATGAGACCACCGTGAAGAAGCTT 529
Query 518 GTTGGTTCTCAAACCGGTAATGGTATTGTGAAGCTTGATGCGAGCGTCAAGATGCCACAG 577
|| || ||||| || ||||| ||||| |||||| ||||||||||| | |||||||| |
Sbjct 530 GTCGGATCTCAGACAGGTAACGGTATCGTGAAGGTTGATGCGAGCTTGAAGATGCCTGAA 589
Query 578 CCCAAG-AAGGAGCACCGTGATGGGTTTGTCTTGAACTGTTTGGAGGCTCCTCTTGATGT 636
|| ||| |||| | |||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 590 CCAAAGAAAGGTG-ACCGAAAAGGGTTTGTTTTGAACTGTTTGGAGGCTCCTCTTGATGT 648
Query 637 TGACATCAAGGATGGAGGCAGAGTCGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGG 696
|||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 649 TGACATTAAGGATGGAGGAAGAGTTGTTGTGTTGAACACAAAGAATCTTCCTTTGGTTGG 708
Query 697 AGAGGTTGGGTTTGGAGCTGATCTTGTGAGGATTGATGGACATTCCATGTGTTCGCCTGG 756
|| ||||| |||||||||||||||||||| || |||||||| || |||||||| |||||
Sbjct 709 TGAAGTTGGATTTGGAGCTGATCTTGTGAGAATCGATGGACACTCTATGTGTTCTCCTGG 768
Query 757 TTTCTCTTGTGACTCTGCTCTTCAGGTGACTTACATTGTGGGTGGAAGTGGAAGAGTCCA 816
|||||||||||||| |||||||| || ||||||||||| ||||||||||| | || ||
Sbjct 769 ATTCTCTTGTGACTCGGCTCTTCAAGTTACTTACATTGTTGGTGGAAGTGGTCGTGTTCA 828
Query 817 GGTGGTTGGGGCTGATGGGAAAAGAGTTCTTGAGACTCATATCAAAGCTGGT-TCTCTCT 875
| | ||||| ||||||||||| |||||||||||||||||| | ||||||||| | | | |
Sbjct 829 GATTGTTGGTGCTGATGGGAAGAGAGTTCTTGAGACTCATGTGAAAGCTGGTGTTT-TGT 887
Query 876 TCATTGTTCCAAGGTTCTTTGTGGTGTCTAAGATTGCTGATTCTGATGGCATGTCTTGGT 935
|||||||||| ||||||||||| || || ||||||||||||||||||||| |||||||||
Sbjct 888 TCATTGTTCCTAGGTTCTTTGTTGTCTCCAAGATTGCTGATTCTGATGGCTTGTCTTGGT 947
Query 936 TCTCCATTGTCACCACTCCTGATCCAATCTTCACACATTTGGCCGGAAAGACATCGGTGT 995
|||||||||| ||||||||||||||||| ||||| ||||||||||| | ||| |||||||
Sbjct 948 TCTCCATTGTGACCACTCCTGATCCAATATTCACTCATTTGGCCGGGAGGACTTCGGTGT 1007
Query 996 GGAAGGCTTTGTCACCTGAGGTTTTGCAGGCGGCGTTTAAGGTTGATCCGGATGTGGAGA 1055
||||||||||||| || |||||||||||||| ||||| ||||| ||||| || || ||||
Sbjct 1008 GGAAGGCTTTGTCGCCGGAGGTTTTGCAGGCAGCGTTCAAGGTGGATCCCGAGGTTGAGA 1067
Query 1056 AGTCCTTCCGATCAAAGAGGACTTCAGACGCCATTTTCTTCCCTCCATCCAACT 1109
|| | |||||||| |||||||| || || |||||||||||| |||| |||||||
Sbjct 1068 AGGCTTTCCGATCTAAGAGGACCTCTGATGCCATTTTCTTCTCTCCTTCCAACT 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5