BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470810
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07770.1 | Symbols: RPS15A | ribosomal protein S15A | chr1:2... 1003 0.0
> AT1G07770.1 | Symbols: RPS15A | ribosomal protein S15A | chr1:2408203-2409577
REVERSE LENGTH=725
Length=725
Score = 1003 bits (543), Expect = 0.0
Identities = 604/633 (95%), Gaps = 5/633 (1%)
Strand=Plus/Plus
Query 4 ATAAAAGGTGATAAGAAAACCCTAGCACACCTTCTCTTCTTCCTCTATTTGCTTTTCTCC 63
|||||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 ATAAAAAGCGATAAGAAAACCCTAGCTCACCTTCTCTTCTTCCTCTAATTGCTTTTCTCC 60
Query 64 GTCACTGAGTGCCCCAGCCTCTCGAGCTCCCAATCTT-A--AGAGGATTGAGCTTAGGGC 120
|||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 61 GTCACTGAGT-ACCTTGCCTCTCGAGCTCCCAATCTTAAGTAGAGGATTGAGCTTAAGGC 119
Query 121 AAGATGGTGAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAA 179
Query 181 CGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCAAAAGTGATTATCAAGTTTCTGATT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 CGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATT 239
Query 241 GTCATGCAGAAGCACGGTTACATCGGCGAGTTTGAGTATGTCGATGACCACAGATCTGGC 300
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 240 GTCATGCAGAAGCACGGTTACATTGGTGAGTTTGAGTATGTCGATGACCACAGATCTGGC 299
Query 301 AAGATCGTTGTTGAATTAAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACGTTTT 360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGATCGTCGTTGAATTGAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACGTTTT 359
Query 361 GATGTTGGTGTCAAGGAGATTGAAGGTTGGACTGCCCGTTTGCTTCCTTCTAGACAGTTT 420
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 GATGTTGGTGTCAAGGAAATTGAAGGTTGGACTGCCCGTTTGCTCCCTTCTAGACAGTTT 419
Query 421 GGGTACATCGTGCTGACTACGTCTGCTGGCATTATGGACCATGAAGAAGCCAGAAGGAAG 480
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 420 GGTTACATCGTGCTGACTACATCTGCTGGCATTATGGACCATGAAGAAGCTAGAAGGAAG 479
Query 481 AATGTAGGAGGCAAGGTTCTCGGCTTCTTCTATTGAAGGTTTATTT-ATGGGGAAAGAGA 539
||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 480 AATGTTGGAGGCAAGGTTCTCGGCTTCTTCTATTGAAGTTTTATTTTATGGGGAAACAGA 539
Query 540 TTTTCATTGAGTTATTTTTAACTTTTGTCCTCCATTTTCTCTGAAACTACCTTTGTCTTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 TTTTCATTGAGTTATTTTTAACTTTTGTCCTCCATTTTCTCTGAAACTACCTTTCTCTTT 599
Query 600 CTTTCGAATTTTGTGACAACTTTGATGGATAGT 632
|||||||||||||||| ||||||||||||||||
Sbjct 600 CTTTCGAATTTTGTGATAACTTTGATGGATAGT 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5