BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470811
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr... 915 0.0
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-76... 268 4e-71
AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12... 257 8e-68
> AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr1:2412980-2413708
FORWARD LENGTH=729
Length=729
Score = 915 bits (495), Expect = 0.0
Identities = 628/688 (91%), Gaps = 26/688 (4%)
Strand=Plus/Plus
Query 1 ATCACCATTCACCACTCAACTAC-T---TCAACTTCCTTTTCCCGAGAAAATCATAAAGA 56
|||||||||||||||| |||||| | |||||||||||||||||||||||||| |||||
Sbjct 1 ATCACCATTCACCACTAAACTACTTCAATCAACTTCCTTTTCCCGAGAAAATCAGAAAGA 60
Query 57 AAATTCACTATGGCACCAAGAGCCGAGAAGAAGCCCGCCGAGAAAAAACCCGCGGCTGAG 116
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 61 AAATTCACGATGGCACCAAGAGCCGAGAAGAAGCCCGCCGAGAAAAAAACCGCCGCTGAG 120
Query 117 AAACCGGTGGAAGAGAACAAGGCCGCCGAAAAAGCTCCGGCGGAGAAGAAACCCAAGGCG 176
| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 121 AGACCGGTGGAAGAGAACAAGGCTGCTGAAAAGGCTCCGGCGGAGAAGAAACCCAAGGCG 180
Query 177 GGGAAGAAATTGCCACCGACGAAGGAGGCCGGCGACAAAAAGAAGAAGCGTTCGAAGAAA 236
||||||||||||||||| | ||||| ||||| ||||| ||||||||||| || ||||||
Sbjct 181 GGGAAGAAATTGCCACC-A--AAGGAAGCCGGTGACAAGAAGAAGAAGCGATCTAAGAAA 237
Query 237 AACATCGAAACCTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATC 296
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 AACGTCGAAACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGATATC 297
Query 297 GGGATTTCAAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATCTTCGAGAAG 356
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 298 GGAATTTCAAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATATTCGAGAAG 357
Query 357 CTAGCTCAGGAATCTTCGAAGCTCGCAAGGTACAACAAGAAGCCGACAATCACATCTCGC 416
|||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct 358 CTAGCTCAGGAATCTTCGAAACTCGCTAGGTACAACAAGAAGCCGACCATTACATCTCGC 417
Query 417 GAGATCCAGACGGCTGTTAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCTGTCTCT 476
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 GAGATCCAGACGGCTGTGAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCT 477
Query 477 GAAGGTACCAAGGCGGTGACCAAGTTTACTAGCTCTTGAAGAGACCCGGTTAGGGTTTTC 536
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAAGGTACCAAGGCGGTTACCAAGTTTACTAGCTCTTGAAGAGACCCGGTTAGGGTTTTT 537
Query 537 AGGGATTTCAATTTCGGTTTGGTTTTTAGTACTATCTAGGAAATTAGATGC-TT---CG- 591
||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||
Sbjct 538 AGGGATTTCAATTTCGGTTTGGTTTTTAGTACT-TGTAGGAAATTAGATGCATTATTCGC 596
Query 592 T-A--TT--T-T---GTGGCTCTGTAAA-CTAGGAAGAAGAGATGATTGTTCCTT--TTT 639
| | || | | |||||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct 597 TTAACTTCGTATTTTGTGGCTTTGTAACTCTAGGAAGTAGAGAAGATTGTTCCTTCCTTT 656
Query 640 -ATGAATTTCAATGATGAATTATATATT 666
||||||||||||| || ||||||||||
Sbjct 657 TATGAATTTCAATGTTGGATTATATATT 684
> AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-7652622
REVERSE LENGTH=666
Length=666
Score = 268 bits (145), Expect = 4e-71
Identities = 293/365 (80%), Gaps = 7/365 (2%)
Strand=Plus/Plus
Query 154 CGGCGGAGAAGAAACCCAAGGCGGGGAAGAAATTGCC-ACCG-A-C-GAAGGAGGCCGGC 209
|||| ||||||||||| || || || |||||| | || | | | | | || |||||
Sbjct 129 CGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAAGGAACCAGCCGG-CGCCGGA 187
Query 210 GACAAAAAGAAGAAGCGTTCGAAGAAAAACATCGAAACCTACAAGATCTACATCTTCAAG 269
||||| ||||||||| | || ||||| ||| | || || |||||||||||||||||||||
Sbjct 188 GACAAGAAGAAGAAGAGATCAAAGAAGAACGTTGAGACATACAAGATCTACATCTTCAAG 247
Query 270 GTGTTGAAGCAGGTTCATCCAGATATCGGGATTTCAAGCAAAGCCATGGGGATTATGAAC 329
||||||||||| ||||||||||||||||| || || |||||||||||||| || ||||||
Sbjct 248 GTGTTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATGAAC 307
Query 330 AGCTTCATCAACGACATCTTCGAGAAGCTAGCTCAG-GAATCTTCGAAGCTCGCAAGGTA 388
|| |||||||| || ||||| ||||| || ||| | || ||||||||||| || |||||
Sbjct 308 AGTTTCATCAATGATATCTTTGAGAAACTTGCTG-GTGAGTCTTCGAAGCTTGCGAGGTA 366
Query 389 CAACAAGAAGCCGACAATCACATCTCGCGAGATCCAGACGGCTGTTAGACTCGTCCTCCC 448
||||||||||||||| || || ||| | ||||| ||||| || || ||||| || | ||
Sbjct 367 CAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTGTTGCC 426
Query 449 CGGTGAACTCGCTAAACACGCTGTCTCTGAAGGTACCAAGGCGGTGACCAAGTTTACTAG 508
|| || | || ||||| ||||| |||||||| || |||||||| || |||||||| ||
Sbjct 427 TGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTACGAAGTTTACGAG 486
Query 509 CTCTT 513
||||
Sbjct 487 TTCTT 491
> AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12326978-12327678
FORWARD LENGTH=701
Length=701
Score = 257 bits (139), Expect = 8e-68
Identities = 358/462 (77%), Gaps = 22/462 (5%)
Strand=Plus/Plus
Query 66 ATGGCACCAAGAGCC-GAGAAGAAGCCCGCCGAGAAAAAACCCGCGGCTGAGAAA---CC 121
|||||||||| |||| || ||||| || || ||| ||||| || | || |||||| ||
Sbjct 66 ATGGCACCAAAAGCCGGA-AAGAAACCAGCAGAG-AAAAAGCC-C-GCAGAGAAAGCTCC 121
Query 122 GGTGGAAG-AGAACAAGGCCGCCGAAAAAGCTCCGGCGGAGAAGAAACCCAAGGCGGGGA 180
| |||| || | || | ||||||||||| || || ||||||||||| || || || |
Sbjct 122 AGCAGAAGAAG-AGAAAGTAGCCGAAAAAGCACCAGCAGAGAAGAAACCAAAAGCCGGAA 180
Query 181 AGAAATTGCC-ACCG-A-C-G--A-AGGAGGCCGGCGACAAAAAGAAGAAGCG-TTCGAA 232
| ||| | || | | | | | | ||||| | ||| || |||||||| || || ||
Sbjct 181 AAAAACTACCAAAAGAAGCAGTCACCGGAGG-AGTCGAGAAGAAGAAGAAACGAGTC-AA 238
Query 233 GAAAAACATC-GAAACCTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAG 291
||||| || | || || ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 239 GAAAAGCA-CAGAGACATACAAGATCTACATCTTCAAGGTGTTGAAACAAGTTCATCCAG 297
Query 292 ATATCGGGATTTCAAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATCTTCG 351
|||| || || ||||| ||||| ||||||||||||||||| || ||||| || || ||||
Sbjct 298 ATATTGGAATCTCAAGTAAAGCTATGGGGATTATGAACAGTTTTATCAATGATATATTCG 357
Query 352 AGAAGCTAGCTCAGGAATCTTCGAAGCTCGCAAGGTACAACAAGAAGCCGACAATCACAT 411
|||| || || || ||| |||| || | || ||||| || ||||| || || || || |
Sbjct 358 AGAAACTTGCGCAAGAAGCTTCAAAATTAGCTAGGTATAATAAGAAACCTACGATTACTT 417
Query 412 CTCGCGAGATCCAGACGGCTGTTAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCTG 471
|| | ||||| ||||| ||||||||||| || | || |||||||| ||||| || ||||
Sbjct 418 CTAGGGAGATTCAGACAGCTGTTAGACTAGTGTTACCTGGTGAACTTGCTAAGCATGCTG 477
Query 472 TCTCTGAAGGTACCAAGGCGGTGACCAAGTTTACTAGCTCTT 513
| |||||||| || ||||| || || ||||||||||||||||
Sbjct 478 TTTCTGAAGGAACTAAGGCTGTTACTAAGTTTACTAGCTCTT 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5