BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470812 Length=607 Score E Sequences producing significant alignments: (Bits) Value AT1G07795.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 743 0.0 AT2G28725.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 58.4 8e-08 > AT1G07795.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2414286-2414967 FORWARD LENGTH=682 Length=682 Score = 743 bits (402), Expect = 0.0 Identities = 482/519 (93%), Gaps = 11/519 (2%) Strand=Plus/Plus Query 1 ATTTTCATTTCCGTTTCCAAACACACACATATAAACCGCACCAATCAAACAAGCTTTGG- 59 |||||||||||||||||| | | |||| ||||||||||||||||||||||||| ||| Sbjct 1 ATTTTCATTTCCGTTTCC--A-A-ACAC--ATAAACCGCACCAATCAAACAAGCTCTGGT 54 Query 60 TTCTGCTCATCGATCTCACAATCTTTTCGTTTTCTCGC-AAGCAACACCTAATTTCTTTT 118 || ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 55 TTTTGCTCATCGATCTCACAATCTTTTCGTTTCCTCGCAAACCAACACCTAATTTCTTTT 114 Query 119 GATCCACGCTAAAACAA-CCCCGTTTCTTCTGATCGAGATGTATCACCGTCTTCCGTCGT 177 ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||| Sbjct 115 GATCCACGCTAAAACAATCCCCATTTCTTCTGATCAAGATGTATCACCGTCTTCCATCGC 174 Query 178 TAATGGAGCCGTTTCTCCGGAGAGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 237 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 175 TAATGGAGCCGTTTCTACGGAGTGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 234 Query 238 CGTGGACGGTGCTTCTCATGTTTACTGTTGCGGTCGCTTCGTTTGCTCCGGAGATGGCGT 297 |||||||||||||||| ||||| || || || |||||||||||||||||||||||||| | Sbjct 235 CGTGGACGGTGCTTCTAATGTTCACGGTGGCCGTCGCTTCGTTTGCTCCGGAGATGGCTT 294 Query 298 TTGTGTCGACGGTTTCGTCTTCTTGCGGAGGAGGAGATGGGTTT-GTGAAGATTCCGATG 356 ||||||| ||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| Sbjct 295 TTGTGTCTACGGTGTCGTCTTCGTGCGGAGGAGGAGATGG-TTTCGTGAAGATTCCGATG 353 Query 357 GACTTTGCAGGGGAGAGTATATGCGTGCCGGCTAACATGGTGAAGAGATCACGTTTTGAT 416 || ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| Sbjct 354 GATTTTGCAGGGGAGAGTATATGCGTGCCGTCTAATATGGTGAAGAGATCGCGTTTTGAT 413 Query 417 TTGTTTGTGCCTTCTATTTTCGCGGCGGTTATGGTCACGGCTTCGGCTTGTTTGATCCGA 476 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 414 TTGTTTGTGCCTTCGATTTTCGCGGCGGTTATGGTCACTGCTTCGGCTTGTTTGATCCGA 473 Query 477 TCGTGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 515 || |||||||||||||||||||||||||||||||||||| Sbjct 474 TCATGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 512 > AT2G28725.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12328605-12328943 FORWARD LENGTH=339 Length=339 Score = 58.4 bits (31), Expect = 8e-08 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 273 GCTTCGTTTGCTCCGGAGATGGCGTTTGTGTCGA 306 ||||| |||||||||||||||||||||||||||| Sbjct 94 GCTTCATTTGCTCCGGAGATGGCGTTTGTGTCGA 127 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29236273554 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5