BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470812
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07795.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 743 0.0
AT2G28725.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 58.4 8e-08
> AT1G07795.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G28725.1);
Has 38 Blast hits to 38 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2414286-2414967
FORWARD LENGTH=682
Length=682
Score = 743 bits (402), Expect = 0.0
Identities = 482/519 (93%), Gaps = 11/519 (2%)
Strand=Plus/Plus
Query 1 ATTTTCATTTCCGTTTCCAAACACACACATATAAACCGCACCAATCAAACAAGCTTTGG- 59
|||||||||||||||||| | | |||| ||||||||||||||||||||||||| |||
Sbjct 1 ATTTTCATTTCCGTTTCC--A-A-ACAC--ATAAACCGCACCAATCAAACAAGCTCTGGT 54
Query 60 TTCTGCTCATCGATCTCACAATCTTTTCGTTTTCTCGC-AAGCAACACCTAATTTCTTTT 118
|| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 55 TTTTGCTCATCGATCTCACAATCTTTTCGTTTCCTCGCAAACCAACACCTAATTTCTTTT 114
Query 119 GATCCACGCTAAAACAA-CCCCGTTTCTTCTGATCGAGATGTATCACCGTCTTCCGTCGT 177
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||
Sbjct 115 GATCCACGCTAAAACAATCCCCATTTCTTCTGATCAAGATGTATCACCGTCTTCCATCGC 174
Query 178 TAATGGAGCCGTTTCTCCGGAGAGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 237
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 175 TAATGGAGCCGTTTCTACGGAGTGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 234
Query 238 CGTGGACGGTGCTTCTCATGTTTACTGTTGCGGTCGCTTCGTTTGCTCCGGAGATGGCGT 297
|||||||||||||||| ||||| || || || |||||||||||||||||||||||||| |
Sbjct 235 CGTGGACGGTGCTTCTAATGTTCACGGTGGCCGTCGCTTCGTTTGCTCCGGAGATGGCTT 294
Query 298 TTGTGTCGACGGTTTCGTCTTCTTGCGGAGGAGGAGATGGGTTT-GTGAAGATTCCGATG 356
||||||| ||||| |||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 295 TTGTGTCTACGGTGTCGTCTTCGTGCGGAGGAGGAGATGG-TTTCGTGAAGATTCCGATG 353
Query 357 GACTTTGCAGGGGAGAGTATATGCGTGCCGGCTAACATGGTGAAGAGATCACGTTTTGAT 416
|| ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 354 GATTTTGCAGGGGAGAGTATATGCGTGCCGTCTAATATGGTGAAGAGATCGCGTTTTGAT 413
Query 417 TTGTTTGTGCCTTCTATTTTCGCGGCGGTTATGGTCACGGCTTCGGCTTGTTTGATCCGA 476
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 414 TTGTTTGTGCCTTCGATTTTCGCGGCGGTTATGGTCACTGCTTCGGCTTGTTTGATCCGA 473
Query 477 TCGTGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 515
|| ||||||||||||||||||||||||||||||||||||
Sbjct 474 TCATGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 512
> AT2G28725.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G07795.1);
Has 35 Blast hits to 35 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12328605-12328943
FORWARD LENGTH=339
Length=339
Score = 58.4 bits (31), Expect = 8e-08
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 273 GCTTCGTTTGCTCCGGAGATGGCGTTTGTGTCGA 306
||||| ||||||||||||||||||||||||||||
Sbjct 94 GCTTCATTTGCTCCGGAGATGGCGTTTGTGTCGA 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5