BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470814
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:24... 566 8e-161
AT1G07660.1 | Symbols: | Histone superfamily protein | chr1:23... 545 1e-154
AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24... 326 2e-88
> AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:2421218-2421943
REVERSE LENGTH=726
Length=726
Score = 566 bits (306), Expect = 8e-161
Identities = 336/351 (96%), Gaps = 0/351 (0%)
Strand=Plus/Plus
Query 1 TCACAGATCTTTGGGTATCAAGTGAAAGTGTGAAGAGATGTCaggaagaggaaagggagg 60
||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||
Sbjct 161 TCACAGATCTTTGGGTATCAAGTAAAACTGTGAAGTGATGTCGGGAAGAGGAAAGGGAGG 220
Query 61 aaaaggattgggaaagggaggagcgaagaggcataggaaggttctgagggaTAACATTCA 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 221 AAAAGGATTGGGAAAGGGAGGAGCGAAGAGGCACAGGAAGGTTCTGAGGGATAACATTCA 280
Query 121 AGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGCAGAGGTGGTGTCAAGCGTATCAG 180
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 281 AGGAATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAG 340
Query 181 TGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAGAATGTCATCCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAGAATGTCATCCG 400
Query 241 TGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCCATGGATGTTGT 300
|||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 401 TGACGCCGTTACTTACACTGAGCACGCTAGAAGGAAGACGGTGACCGCCATGGATGTTGT 460
Query 301 CTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGCGGTTAATC 351
||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 461 CTACGCTTTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGAGGTTAATC 511
> AT1G07660.1 | Symbols: | Histone superfamily protein | chr1:2368837-2369734
FORWARD LENGTH=717
Length=717
Score = 545 bits (295), Expect = 1e-154
Identities = 311/319 (97%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 33 AAGAGATGTCaggaagaggaaagggaggaaaaggattgggaaagggaggagcgaagaggc 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAGGC 249
Query 93 ataggaaggttctgagggaTAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTG 152
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 250 ACAGGAAGGTTCTGAGGGATAACATTCAAGGAATCACCAAGCCTGCTATTCGTCGTCTTG 309
Query 153 CTCGCAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC 212
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC 369
Query 213 TCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA 272
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 370 TCAAGATCTTCCTCGAGAATGTTATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA 429
Query 273 GGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCT 332
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 430 GGAAGACGGTGACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCT 489
Query 333 ACGGTTTCGGCGGTTAATC 351
|||||||||| ||||||||
Sbjct 490 ACGGTTTCGGAGGTTAATC 508
> AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24051552-24052143
FORWARD LENGTH=592
Length=592
Score = 326 bits (176), Expect = 2e-88
Identities = 274/322 (85%), Gaps = 4/322 (1%)
Strand=Plus/Plus
Query 31 TGAAGAGATGTCaggaagaggaaagggaggaaaaggattgggaaagggaggagcgaagag 90
|||| | ||||| || | ||||||||||||||||| ||||| ||||||||||| ||| |
Sbjct 91 TGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGCG 150
Query 91 gcataggaaggttctgagggaTAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCT 150
|| |||||||||||||| || ||||| ||||| |||||||||||||| ||||| | |
Sbjct 151 TCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAG-AT 209
Query 151 T-GCTCGCAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGAC-CAGAGGT 208
| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| | | ||
Sbjct 210 TGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTC-GTGGC 268
Query 209 GTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCC 268
|||||||||||||| |||||||| || || ||||| || || || ||||| ||||||||
Sbjct 269 GTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCT 328
Query 269 AGGAGGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACT 328
||||||||||| ||||| ||||||||||||||||||||| | |||||||||||| | |||
Sbjct 329 AGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACT 388
Query 329 CTCTACGGTTTCGGCGGTTAAT 350
|| ||||| ||||| |||||||
Sbjct 389 CTTTACGGATTCGGTGGTTAAT 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5