BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470815
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07830.1 | Symbols: | ribosomal protein L29 family protein ... 878 0.0
AT5G11242.1 | Symbols: | pseudogene of ribosomal protein | chr... 254 1e-66
> AT1G07830.1 | Symbols: | ribosomal protein L29 family protein
| chr1:2422241-2423655 FORWARD LENGTH=850
Length=850
Score = 878 bits (475), Expect = 0.0
Identities = 657/737 (89%), Gaps = 43/737 (6%)
Strand=Plus/Plus
Query 1 ATTAGATAACTGAAAGCTCAAAGGGAA----TTGTTGTTACAATGTTTCTTACGCGATTT 56
|||| ||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 112 ATTATATAACTGCAAGCTCAAA-GGAATTGTTTGTTGTTAAAATGTTTCTTACGCGATTT 170
Query 57 GTCGGGAGGAGATTCTTGGCGGCTGCATCGGCGAGATCGGAGTCCACT--A-CTGCAGCA 113
||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 171 GTCGGGAGGAGATTCTTGGCGGCTGCATCGGCGCGATCGGAGTCCACTACAGCAGCAGCA 230
Query 114 GCTGCCTCAG-CGATTCGGACGCCCCA-AAATCCACTCGAAGAGTTCTTTGAGTTTGACA 171
|||||||| | ||||||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 231 GCTGCCTC-GACGATTCGGACG-CCAACAAATCCACTCGAAGAGTTCTTTGAGTTCGACA 288
Query 172 GAAGCCAGGATGAAGATAAACCTGTTGTCTACGGTCGAGGTTGGAAAGCTTCAGAACTGC 231
||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 289 GAAGCCAAGACGAAGATAAACCTGTTGTCTATGGTCGAGGTTGGAAAGCTTCAGAGCTGC 348
Query 232 GTCTCAAGTCATGGGATGATCTTCAGAAGCTGTGGTACGTTCTTCTCAAAGAGAAAAACA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GTCTCAAGTCATGGGATGATCTTCAGAAGCTGTGGTACGTTCTTCTCAAAGAGAAAAACA 408
Query 292 TGTTGATGACTCAGCGTCAGATGCTTCAAGCCCAGAACATGCAGTTTCCAAACCCTGAAC 351
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 409 TGTTGATGACTCAGCGTCAGATGCTTCAGGCTCAGAACATGCAGTTTCCTAACCCTGAAC 468
Query 352 GCATTCCAAAGGTGAGGAGATCAATGTGCCGCATTAAGCATGTGCTTACAGAGAGAGCGA 411
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 469 GCATTCCAAAGGTGAGGAGATCAATGTGCCGCATTAAGCATGTGCTGACCGAGAGAGCGA 528
Query 412 TTGAAGAACCAGATCCTAGAAGATCAGCCGAGATGAAGAGAATGGTAAATGGTATGTGA- 470
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TTGAAGAACCAGATTCTAGAAGATCAGCCGAGATGAAGAGAATGGTAAATGGTATGTGAT 588
Query 471 CCCATTGGCTCTTGTTTTGGCAACCTAGCAGTAAGCTCGAGTCTATTCGCAGAGGTGTTT 530
|||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 589 CCCATTGGCTCTTGTTTTGGCAACCTAGCAGTAAGCACGAGTCAATCCGCAGAGGTGTTG 648
Query 531 AGTTTTTGGGAGTAAGAAATAACGCAAGAGGTTGAAGAAGACTT-GGTATTTTGTCCT-T 588
||||||| |||||||||||||||||| || || | | ||||| || | | |||| |
Sbjct 649 AGTTTTTCGGAGTAAGAAATAACGCAT-AGCTTTCA-A-GACTTTGGAACTG-GTCCAAT 704
Query 589 --TTG-GAGCTGGTC-TAGTGATTG-CAGTAGAAAAATGTTTGGT----A-C---A---- 631
||| || ||| | ||||| | | ||||||||||| ||||||| | | |
Sbjct 705 GATTGTGA-CTG-TAGTAGTG-TCGGCAGTAGAAAAACGTTTGGTTGGTATCTGTACGCA 761
Query 632 --TTCCTGTAACCTATGGTTGATGTTTCTTTTTAAGACACAAGTTGGTCAGT-T-GATTC 687
|| ||||||| |||||||||||||||||||| ||||||| |||||||||| | |||||
Sbjct 762 CATTTCTGTAACTTATGGTTGATGTTTCTTTTTGAGACACATGTTGGTCAGTGTTGATTC 821
Query 688 AGAGCTTTGTCTTTCTC 704
|||||||||||||||||
Sbjct 822 AGAGCTTTGTCTTTCTC 838
> AT5G11242.1 | Symbols: | pseudogene of ribosomal protein | chr5:3587252-3587928
REVERSE LENGTH=445
Length=445
Score = 254 bits (137), Expect = 1e-66
Identities = 197/226 (87%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 116 TGCCTC-AGCGATTCGGACGCCCCAAAATCCACTCGAAGAGTTCTTTGAGTTTGACAGAA 174
|||||| || ||||| ||||| ||||||| ||||||||||||||| |||| ||||||
Sbjct 60 TGCCTCAAG-AATTCGAACGCCAAAAAATCCTCTCGAAGAGTTCTTTCAGTTCAACAGAA 118
Query 175 GCCAGGATGAAGATAAACCTGTTGTCTACGG-TCGAGGTTGGAAAGCTTCAGAACTGCGT 233
|||| || ||||| ||||||| ||| || || || | |||||||||||||| || |||||
Sbjct 119 GCCAAGACGAAGACAAACCTGGTGTTTATGGTTC-ATGTTGGAAAGCTTCAAAATTGCGT 177
Query 234 CTCAAGTCATGGGATGATCTTCAGAAGCTGTGGTACGTTCTTCTCAAAGAGAAAAACATG 293
||| |||||||||||||||||||||||||||| || ||| || | |||||||| ||||||
Sbjct 178 CTCGAGTCATGGGATGATCTTCAGAAGCTGTGCTATGTTATTTTGAAAGAGAAGAACATG 237
Query 294 TTGATGACTCAGCGTCAGATGCTTCAAGCCCAGAACATGCAGTTTC 339
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 TTGATGACTCAGCGTCAGATGCTTCAAGCCCAAAACATGCAGTTTC 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5