BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470820
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07860.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 577 3e-164
AT1G07870.2 | Symbols: | Protein kinase superfamily protein | ... 490 4e-138
> AT1G07860.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Protein kinase superfamily protein (TAIR:AT1G07870.2);
Has 7 Blast hits to 7 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2428911-2429431
REVERSE LENGTH=439
Length=439
Score = 577 bits (312), Expect = 3e-164
Identities = 395/433 (91%), Gaps = 13/433 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGAAAGATCATTCTCTCAGCTCCCGATCTCTTCTTCTCACATTGGCAGGAA-GAC 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 ATGGCGGAAAGATCATTCTCTCAGCTCCCGATCTCTTCTTCTCACATTGGCA-GAAGGAC 59
Query 60 -GCAGAACTCGCGGAGAGGGATTTTTCCGGTATCGGAGTACTGGATCCACGCAATTCCCG 118
| | ||| | ||||||||||| ||||||||||||||||| |||||||| |||||||| |
Sbjct 60 AGGA-AACACCCGGAGAGGGATATTTCCGGTATCGGAGTATTGGATCCATGCAATTCCGG 118
Query 119 TGATCGTTTTTCTCTGCTTCTTCACCCTTTGGATTTTCTCCCACTCAGTGAGCGTCATGA 178
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 TGATCGTTTTTCTCTGTTTCTTCACCCTCTGGATTTTCTCCCACTCAGTGAGCGTCATGA 178
Query 179 ACGATGGAGAGATAATGTCGATACATCGTCTCGAGAAATCCATGGCTGTGAGAAACGAGT 238
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 179 ACGATGGAGAGATAATGTCGATACATCGTCTTGAGAAATCCATGGCCGTGAGAAACGAGT 238
Query 239 CTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTC---AGGTCTCG 295
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 239 CTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTCCTCAGCTCTCG 298
Query 296 TCG---TC-TCT--ACCAATCAAAATCTGACAACTCCTCACAACGCAACCCAATCGCAGC 349
||| || ||| |||||||| ||||| |||||| |||||||||||| ||||||||||
Sbjct 299 TCGCCGTCGTCTCTACCAATCAGAATCTCACAACTTTTCACAACGCAACTCAATCGCAGC 358
Query 350 AAAACGCCACTCAATCGGTGAACAAAGCAAAGCAGCCACACGCCGTCTGATCTCTGACCG 409
|||| || || || ||||||||||||||||| ||||||||||| |||| |||||||| ||
Sbjct 359 AAAATGCAACCCAGTCGGTGAACAAAGCAAAACAGCCACACGCAGTCTAATCTCTGAACG 418
Query 410 GAGAAAAGTTTCT 422
|||||||||||||
Sbjct 419 GAGAAAAGTTTCT 431
> AT1G07870.2 | Symbols: | Protein kinase superfamily protein
| chr1:2428773-2432057 REVERSE LENGTH=2000
Length=2000
Score = 490 bits (265), Expect = 4e-138
Identities = 345/382 (90%), Gaps = 12/382 (3%)
Strand=Plus/Plus
Query 52 AGGAA-GAC-GCAGAACTCGCGGAGAGGGATTTTTCCGGTATCGGAGTACTGGATCCACG 109
||||| ||| | | ||| | ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1474 AGGAAGGACAGGA-AACACCCGGAGAGGGATATTTCCGGTATCGGAGTATTGGATCCATG 1532
Query 110 CAATTCCCGTGATCGTTTTTCTCTGCTTCTTCACCCTTTGGATTTTCTCCCACTCAGTGA 169
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1533 CAATTCCGGTGATCGTTTTTCTCTGTTTCTTCACCCTCTGGATTTTCTCCCACTCAGTGA 1592
Query 170 GCGTCATGAACGATGGAGAGATAATGTCGATACATCGTCTCGAGAAATCCATGGCTGTGA 229
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1593 GCGTCATGAACGATGGAGAGATAATGTCGATACATCGTCTTGAGAAATCCATGGCCGTGA 1652
Query 230 GAAACGAGTCTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTC-- 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 GAAACGAGTCTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTCCT 1712
Query 288 -AGGTCTCGTCG---TC-TCT--ACCAATCAAAATCTGACAACTCCTCACAACGCAACCC 340
|| |||||||| || ||| |||||||| ||||| |||||| |||||||||||| |
Sbjct 1713 CAGCTCTCGTCGCCGTCGTCTCTACCAATCAGAATCTCACAACTTTTCACAACGCAACTC 1772
Query 341 AATCGCAGCAAAACGCCACTCAATCGGTGAACAAAGCAAAGCAGCCACACGCCGTCTGAT 400
||||||||||||| || || || ||||||||||||||||| ||||||||||| |||| ||
Sbjct 1773 AATCGCAGCAAAATGCAACCCAGTCGGTGAACAAAGCAAAACAGCCACACGCAGTCTAAT 1832
Query 401 CTCTGACCGGAGAAAAGTTTCT 422
|||||| |||||||||||||||
Sbjct 1833 CTCTGAACGGAGAAAAGTTTCT 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20006564102
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5