BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470821
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07870.2 | Symbols: | Protein kinase superfamily protein | ... 2187 0.0
AT5G02800.1 | Symbols: | Protein kinase superfamily protein | ... 368 9e-101
AT1G70130.1 | Symbols: | Concanavalin A-like lectin protein ki... 52.8 1e-05
> AT1G07870.2 | Symbols: | Protein kinase superfamily protein
| chr1:2428773-2432057 REVERSE LENGTH=2000
Length=2000
Score = 2187 bits (1184), Expect = 0.0
Identities = 1372/1461 (94%), Gaps = 20/1461 (1%)
Strand=Plus/Plus
Query 1 TAAGCTTTCTCTGTTTGTCACTAAGctctttctctct-ctctcttctTCGACtttttttt 59
||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||
Sbjct 26 TAAGCTTTCTCTGTTTGTCACTAAGCTCTCTCTCTCTCCT-TCTTCTTCGAC--TTTTTT 82
Query 60 ttttttttCTCTCTTCTCTTT-GATTATTCGTGTTGGGGTTTTATCTGGGTTTCTGATTT 118
|||| || ||||||||||||| | || || ||||| |||||||||||||||| |||||||
Sbjct 83 TTTTCTTCCTCTCTTCTCTTTGGTTTTTTGGTGTT-GGGTTTTATCTGGGTTCCTGATTT 141
Query 119 -TTCCAACGAGGAAGGAA-GAAG-AGAAAAGATTAAAGGGGACAAGC--GAATAACTCTT 173
|| |||||||||||||| |||| |||| ||| ||| ||||||||| |||| ||||||
Sbjct 142 CTT-CAACGAGGAAGGAAGGAAGAAGAAGAGA--AAA-GGGACAAGCGAGAATTACTCTT 197
Query 174 TTCTCCTTCAATTTCCAATGGGTTGTTTCGGATGCAGTAAGAAATCGAGCAAACGATCGG 233
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 198 TTCTCCTTCAATTTCCGATGGGTTGTTTCGGATGCAGTAAGAAATCGAGCAAACGATCCG 257
Query 234 AGACTAACAAAGATACTGTCATAAATAGAAAAATCGTCGGTGGCACTACGAGCGTCG-TG 292
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
Sbjct 258 AGACTAACAAAGATACTGTCATAAATAGAAAAATTGTCGGTGGTACTACGAGCGTTGCT- 316
Query 293 AAGAGCGATAAGCGAGACGATCAGACTCAACCCAGTTCAGATTCAACAAAAGTCAGTCCA 352
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 317 AAGAGTGATAAGCGAGACGATCAGACTCAGCCCAGTTCAGATTCAACAAAAGTCAGTCCA 376
Query 353 TATCGAGATGTTAACAATG-A--AGGAGTTGGGAAAGAAGATCAGTTATCTCTGGATGTG 409
||| ||||||| ||||||| | ||||||||| || ||||||||||||||| ||||||||
Sbjct 377 TATAGAGATGTAAACAATGAAGGAGGAGTTGGTAAGGAAGATCAGTTATCTTTGGATGTG 436
Query 410 AAGGGTTTGAATTTGAATGATCAAGTCACAGGGAAGAAAGCACAGACTTTTACCTTTCAA 469
|||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 437 AAGGGTTTGAATCTAAATGACCAAGTCACAGGGAAGAAAGCACAGACTTTTACTTTTCAA 496
Query 470 GAACTTGCAGTAGCTACTGGAAACTTTAGATCGGATTGTTTTCTAGGTGAAGGAGGTTTT 529
|||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 497 GAACTTGCAGAAGCTACGGGAAACTTTAGATCGGATTGTTTTCTTGGTGAAGGAGGTTTC 556
Query 530 GGAAAAGTTTTCAAGGGAACTTTAGAGAAATTGGATCAGGTTGTTGCGATCAAGCAACTT 589
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 557 GGAAAAGTTTTCAAGGGAACTATAGAGAAATTGGATCAGGTTGTTGCAATCAAGCAACTT 616
Query 590 GACCGTAATGGGGTTCAAGGTATCAGGGAATTTGTTGTTGAGGTACTGACTCTAAGTCTT 649
|| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 617 GATCGTAATGGGGTTCAAGGAATCAGGGAATTTGTGGTTGAGGTATTGACTCTAAGTCTT 676
Query 650 GCTGACCATCCGAATCTCGTGAAGCTTATTGGGTTTTGTGCTGAGGGTGATCAGAGACTA 709
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GCTGACCATCCGAATCTTGTGAAGCTTATTGGGTTTTGTGCTGAGGGTGATCAGAGACTA 736
Query 710 TTGGTCTACGAGTATATGCCGCAAGGATCTCTTGAAGATCATCTACATGATCTCCCTTCT 769
|||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 737 CTGGTGTACGAGTATATGCCGCAAGGATCCCTTGAAGATCATCTACATGTTCTCCCTTCT 796
Query 770 GGTAAAAAACCTCTTGATTGGAACACCCGGATGAAAATAGCAGCTGGTGCAGCAAGAGGT 829
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GGTAAAAAGCCTCTTGACTGGAACACCCGGATGAAAATAGCAGCTGGTGCAGCAAGAGGT 856
Query 830 TTAGAGTATCTGCATGACAGAATGACGCCCCCAGTGATTTACCGAGACCTTAAATGTTCG 889
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 857 TTAGAGTATCTGCATGACAGAATGACGCCCCCTGTGATTTACCGAGATCTTAAATGTTCG 916
Query 890 AATATTTTGCTTGGTGAAGACTATCATTCGAAACTATCTGACTTTGGATTGGCTAAAGTA 949
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 917 AATATTTTGCTTGGTGAAGACTATCAACCGAAACTATCTGACTTTGGGTTGGCTAAAGTA 976
Query 950 GGACCAAGCGGGGATAAAACCCATGTCTCCACAAGGGTTATGGGAACATACGGATACTGT 1009
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 977 GGACCAAGCGGGGATAAAACCCATGTCTCGACAAGGGTTATGGGAACGTACGGATACTGT 1036
Query 1010 GCTCCTGACTACGCTATGACTGGTCAGCTCACATTTAAATCCGATATATACAGTTTTGGA 1069
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GCTCCTGACTACGCTATGACGGGTCAGCTCACATTTAAATCCGATATATACAGTTTTGGA 1096
Query 1070 GTCGTCCTTCTCGAGCTTATCACCGGAAGGAAAGCAATTGACAATACAAAAACGCGTAAA 1129
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1097 GTAGTCCTTCTCGAGCTTATCACCGGAAGGAAAGCGATTGACAATACAAAAACGCGTAAA 1156
Query 1130 GATCAAAATTTGGTTGGATGGGCACGGCCGTTGTTCAAAGACAGGAGGAACTTCCCGAAA 1189
||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1157 GATCAGAATTTGGTTGGATGGGCACGACCATTGTTCAAAGACAGGAGGAACTTCCCAAAA 1216
Query 1190 ATGGTTGATCCATTGCTTCAGGGACAATACCCGGTTAGAGGACTGTACCAAGCACTAGCA 1249
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1217 ATGGTTGATCCATTGCTTCAGGGACAATACCCAGTTAGAGGACTGTACCAAGCACTAGCA 1276
Query 1250 ATTTCAGCAATGTGCGTTCAAGAGCAGCCAAGCATGAGACCAGTGGTATCTGATGTAGTA 1309
|| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1277 ATATCAGCAATGTGCGTTCAAGAGCAGCCTACCATGAGACCAGTGGTATCTGATGTAGTA 1336
Query 1310 TCGGCTCTCAACTTCTTAGCCTCTTCGAAATATGATCCGAATAGCCCTAGCAGCAGCAGC 1369
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1337 TTGGCTCTCAACTTCTTAGCCTCTTCTAAATATGATCCGAATAGCCCTAGCAGCAGCAGC 1396
Query 1370 AGGAAGAACCCTTCCTTTCACAGAGATAGAGATGATGAAGAGAAAAGACCAGACCTCGTC 1429
||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1397 GGGAAGAACCCTTCTTTTCACAGAGACAGAGATGATGAAGAGAAAAGACCACACCTCGTC 1456
Query 1430 AAAGAAACCGAATATGAAGGA 1450
|| ||||| |||| |||||||
Sbjct 1457 AAGGAAACTGAATGTGAAGGA 1477
> AT5G02800.1 | Symbols: | Protein kinase superfamily protein
| chr5:635228-637503 REVERSE LENGTH=1583
Length=1583
Score = 368 bits (199), Expect = 9e-101
Identities = 547/715 (77%), Gaps = 24/715 (3%)
Strand=Plus/Plus
Query 578 ATCAAGCAACTTGACCGTAATGGGGTT-CAAGGTATCAGGGAATTTGTTGTTGAGGTACT 636
|||||||||||||| | |||| || || ||||| | |||||| || | || ||||| ||
Sbjct 430 ATCAAGCAACTTGATCATAAT-GGTTTACAAGGAAACAGGGAGTTCCTCGTCGAGGTTCT 488
Query 637 GACT-CTAAGTCTTGC-TGACCATCCGAATCTCGTGAAGCTT-ATTGGGTTTTGTGCTGA 693
| | | |||||| | | | || |||||||| || || ||| || || | |||||||||
Sbjct 489 CA-TGTTGAGTCTT-CTTCATCACCCGAATCTTGTTAA-CTTAATAGGATATTGTGCTGA 545
Query 694 GGGTGATCAGAGACTAT-TGGTCTACGAGTATATGCCGCAAGGATCTCTTGAAGATCATC 752
|| ||||| || || | | ||||||||||| ||||| | ||| || ||||||||||||
Sbjct 546 TGGAGATCAAAGGCT-TCTAGTCTACGAGTACATGCCCCTAGGTTCACTTGAAGATCATT 604
Query 753 TACATG--ATCTCCCTTCTGGTAAAAAACCTCTTGATTGGAACACCCGGATGAAAATAGC 810
| || | || || | ||||||| | || ||||| ||||||||| | |||||||||||
Sbjct 605 TGCACGACATTTCAC--CTGGTAAGCAGCCACTTGACTGGAACACCAGAATGAAAATAGC 662
Query 811 AGCTGGTGCAGCAAGAGGTTTAGAGTATCTGCATGACAGAATGACGCCCCCAGTGATTTA 870
|| ||||| |||| |||||| |||||||||||||||| || | ||| |||||||| ||
Sbjct 663 TGCCGGTGCTGCAAAAGGTTTGGAGTATCTGCATGACAAAACCATGCCTCCAGTGATCTA 722
Query 871 CCGAGACCTT-AAATGTTCGAATATTTTGCTTGGTGAAGACTATCATTCGAAA-CTATCT 928
||||| || ||||| || ||||||||||| | ||| || || | ||| ||| |||||
Sbjct 723 TCGAGA-TTTGAAATGCTCAAATATTTTGCTCGATGATGATTA-CTTTCCAAAGCTATCC 780
Query 929 GACTTTGGATTGGCTAAAGTAGGACCAAG-CGGGGATAAAACCCATGTCTCCACAAGGGT 987
||||| || ||||||||| | || || || ||||| || | ||||| ||||| ||||
Sbjct 781 GACTTCGGGTTGGCTAAACTTGG-CCCAGTTGGGGACAAGTCTCATGTGTCCACTCGGGT 839
Query 988 TATGGGAACATACGGATACTGTGCTCCTGACTACGCTATGACTGGTCAGCTCACATTTAA 1047
||||||||||||||||||||||||||| || || || ||||| || ||||| ||| | ||
Sbjct 840 TATGGGAACATACGGATACTGTGCTCCCGAGTATGCAATGACAGGCCAGCTAACACTCAA 899
Query 1048 ATCCGATATATACAGTTTTGGAGTCGTCCT-TCTCGAGCTTATCACCGGAAGGAAAGCAA 1106
||| || | ||||| || || || || || | | ||| |||| || || |||||||||
Sbjct 900 ATCAGACGTTTACAGCTTCGGTGTTGTTCTGT-TGGAGATTATAACTGGTCGGAAAGCAA 958
Query 1107 TTGACAATACAAAAACG-CGTAAAGATCAAAATTTGGTTGGATGGGCACGGCCGTTGTTC 1165
| |||| | ||| | | | | ||| || ||| | || | ||||||| |||| |||||
Sbjct 959 TAGACAGTTCAAGATCTAC-TGGAGAACAGAATCTAGTCGCATGGGCAAGGCCTTTGTTT 1017
Query 1166 AAAGACAGGAGGAACTTCCCGAAAATGGTTGATCCATTGCTTCAGGGACAATACCCGGTT 1225
|||||||||||||| ||| | | |||| ||||||| ||||||| || ||||||||
Sbjct 1018 AAAGACAGGAGGAAATTCTCTCAGATGGCTGATCCAATGCTTCAAGGTCAATACCCTCCG 1077
Query 1226 AGAGGACTGTACCAAGCACTAGCAATTTCAGCAATGTGCGTTCAAGAGCAGCCAA 1280
|||| | ||||||||||| || | |||| |||||||| |||||||||||||
Sbjct 1078 CGAGGGTTATACCAAGCACTCGCTGTAGCAGCGATGTGCGTACAAGAGCAGCCAA 1132
> AT1G70130.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr1:26409743-26411801 REVERSE LENGTH=1971
Length=1971
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 519 AAGGAGGTTTTGGAAAAGTTTTCAAGGG 546
||||||||||||||||||||||||||||
Sbjct 1025 AAGGAGGTTTTGGAAAAGTTTTCAAGGG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83533706880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5