BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470824
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascor... 1576 0.0
AT1G33660.1 | Symbols: | peroxidase family protein | chr1:1219... 180 3e-44
> AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate
peroxidase 1 | chr1:2437725-2439665 FORWARD LENGTH=1022
Length=1022
Score = 1576 bits (853), Expect = 0.0
Identities = 948/993 (95%), Gaps = 9/993 (1%)
Strand=Plus/Plus
Query 182 TTAGCTAAGATGACGAAGAACTACCCAACCGTGAGCGAGGATTACAAGAAAGCTATTGAG 241
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 31 TTAGCTAAGATGACGAAGAACTACCCAACCGTGAGCGAAGATTACAAGAAGGCTGTTGAG 90
Query 242 AAGTGCAAGAGGAAGCTCAGAGGTTTGATAGCTGAGAAGAACTGTGCACCCATCATGGTC 301
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 91 AAGTGCAGGAGGAAGCTCAGAGGTTTGATCGCTGAGAAGAACTGTGCACCCATCATGGTC 150
Query 302 CGACTCGCGTGGCACTCTGCTGGAACTTTCGATTGTCAATCGAGGACTGGAGGTCCATTC 361
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 151 CGACTCGCATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTC 210
Query 362 GGAACAATGAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTCTCCACATTGCT 421
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 211 GGAACAATGAGGTTTGACGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCT 270
Query 422 CTTAGGTTGTTGGATCCCATCAGGGAGCAATTCCCAACCATCTCTTTTGCTGATTTCCAT 481
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 271 CTTAGGTTGTTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTGCTGATTTCCAT 330
Query 482 CAGCTTGCTGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCCACCCT 541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 331 CAGCTTGCTGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGACATTCCTTTCCACCCT 390
Query 542 GGAAGAGAGGACAAGCCCCAGCCACCTCCTGAGGGTCGTCTTCCTGATGCTACCAAGGGT 601
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 391 GGAAGAGAGGACAAGCCCCAACCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGT 450
Query 602 TGTGATCACTTGAGAGACGTCTTTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTC 661
||||| || |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 451 TGTGACCATTTGAGAGATGTCTTTGCTAAGCAGATGGGCTTATCTGACAAAGACATTGTC 510
Query 662 GCTTTATCTGGTGCCCACACTCTGGGAAGATGCCACAAGGATAGGTCTGGCTTTGAAGGT 721
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 511 GCTTTATCTGGTGCCCACACTCTGGGACGATGCCACAAGGATAGGTCTGGCTTCGAAGGT 570
Query 722 GCCTGGACTTCAAACCCTCTAATCTTTGACAACTCTTACTTCAAGGAACTCTTGAGCGGA 781
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 571 GCATGGACATCAAACCCTCTAATCTTCGACAACTCTTACTTCAAGGAACTCTTGAGCGGA 630
Query 782 GAGAAGGAAGGCCTTCTTCAGCTTGTCTCTGACAAGGCGCTATTGGACGACCCTGTTTTC 841
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 631 GAGAAGGAAGGCCTTCTTCAGCTTGTCTCTGACAAAGCACTATTGGACGACCCTGTTTTC 690
Query 842 CGTCCTTTGGTCGAGAAATACGCTGCTGATGAAGATGCCTTTTTCGCTGATTACGCCGAG 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 691 CGTCCTTTGGTCGAGAAATACGCTGCTGATGAAGATGCCTTTTTCGCTGATTACGCTGAG 750
Query 902 GCCCACATGAAGCTTTCTGAGCTTGGGTTTGCTGATGCTTAAGCTCTGACGTATG-T-tg 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 751 GCCCACATGAAGCTTTCTGAGCTTGGGTTTGCTGATGCTTAAGCTGTGACGTATGCTCTG 810
Query 960 tgtgtgtgtgtgtgtCT--CCGAGAGTCATGGCTGTTTTTGGTTGGGGGCTGGAGGGGTC 1017
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TGTGTGTGTGTGTGTCTCCCCGAGAGTCATGGCTGTTTTTGGTTGGGGGCTGGAGGGGTC 870
Query 1018 GCATTGCATTTGAACTTTGTCATATGATTGCTTAATGTACTCTCAGATTTGCGTATCT-T 1076
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 871 GCATTGCATTTGAACTTTGTCATATGATTGCTTAATGTACTCTCGGATTTACGTATCTGT 930
Query 1077 GTTTTTCGGTGGGTT-CTGATTTGA-CACATCCGTTGCGCTTTTGCTGGTTAGACTT-TT 1133
|||||||||||||| | ||||||| |||||||||||||||||||||| |||||| ||
Sbjct 931 TTTTTTCGGTGGGTTGC-GATTTGAACACATCCGTTGCGCTTTTGCTGCTTAGACACATT 989
Query 1134 AATAAAATTAATTTATCTCAATATTTATGCCTC 1166
|||||||||||||| |||| |||||||||||||
Sbjct 990 AATAAAATTAATTTCTCTCGATATTTATGCCTC 1022
> AT1G33660.1 | Symbols: | peroxidase family protein | chr1:12197701-12198322
REVERSE LENGTH=312
Length=312
Score = 180 bits (97), Expect = 3e-44
Identities = 178/213 (84%), Gaps = 21/213 (10%)
Strand=Plus/Plus
Query 491 GGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCCACCC-T-------G 542
|||| |||||||||||||||||||||||||||| |||||| ||||||||| | |
Sbjct 78 GGTGCTGTGGCCGTTGAAGTTACTGGTGGCCCTAAAATTCATTTCCACCCTTGAAGAGAG 137
Query 543 G---A--A-----GAGAG-GACAAGCCCCAGCCACCTCCTGAGGGTCGTCTTCCTGATGC 591
| | | ||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 138 GTTAATCATTCCTGAGAGTGACAAGCCCCATACACCTCCTGAGGGTCGTCTCCCTGATGC 197
Query 592 TACCAAGGGTTGTGATCACTTGAGAGACGTCTTTGCTAAGCAGATGGGCTTGTCTGACAA 651
||| || |||| ||||| |||||||| || |||||||||| ||||||||||||||||||
Sbjct 198 TACAAAAGGTTTTGATCTGTTGAGAGATGTATTTGCTAAGCGGATGGGCTTGTCTGACAA 257
Query 652 GGACATTGTCGCTTTATCTGG-TGCCCACACTC 683
||||||||||||||||||||| | |||||||||
Sbjct 258 GGACATTGTCGCTTTATCTGGAT-CCCACACTC 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57228621300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5