BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470845
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit... 710 0.0
AT1G16430.1 | Symbols: | Surfeit locus protein 5 subunit 22 of... 586 9e-167
AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/EL... 119 4e-26
> AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit
22 of Mediator complex | chr1:2465770-2467022 REVERSE LENGTH=796
Length=796
Score = 710 bits (384), Expect = 0.0
Identities = 567/646 (88%), Gaps = 50/646 (8%)
Strand=Plus/Plus
Query 32 TGGCCGGATCCGGTGGAGGAAGTGGCCCAACGGCTGCCGCCGCCGCCGCGGCTTTACAGA 91
||| |||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 64 TGG-CGGATCCGGTGGAGGAAGCGGTCCAACGGCCGCCGCCGCCGCCGCGGCTTTACAGA 122
Query 92 AGCAAAAGGCGTTGTTGCAGAGAGTAGAGACTGACATCACATCTGTCGTCGATAACTTCA 151
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 123 AGCAAAAGGCGTTGTTACAGAGAGTGGAGACTGACATCACATCTGTCGTCGATAACTTCA 182
Query 152 CGCAAATCGTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGGAAG-CT 210
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 183 CGCAGATCGTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGG-AGACA 241
Query 211 TACATGATGGAGATGCGAGCTTCTAGACTGGTTCAAGCAGCTGATTCTCTTTTGAAACTC 270
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 242 TACATGATGGAGATGCGAGCTTCTAGAATGGTTCAAGCAGCTGATTCTCTTTTGAAACTC 301
Query 271 GAATCGGAACTGAAGCAAACAGCGATTTTTTCAGGATTTGCATCGCTAAACGATCATGTA 330
| ||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 302 GTATCAGAACTTAAGCAAACAGCGATATTTTCAGGATTTGCATCACTAAACGATCATGTA 361
Query 331 GAACAAAGAATAGGAGAGTTTGATCAAGAGGCCGAGAAGACAAATGGATTGTTGGCTAGA 390
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 362 GAACAAAGAATAGAAGAGTTTGATCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGA 421
Query 391 ATAGCTGATGATGCATCTGCCAGTCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCT 450
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 422 ATTGCTGATGATGCATCTGCCAATCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCT 481
Query 451 CAGAGATTGACTCT-GA--T---ATA---G---G-----A-A-AC-AGAT-AAACA-AT- 487
|||||||||||||| || | ||| | | | | || ||| ||||| ||
Sbjct 482 CAGAGATTGACTCTAGACATCTGATATTAGAATGCCTGGAGACACCAGAGGAAACAGATA 541
Query 488 ------T-GGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCGGAGGATATGCAGTT 540
| |||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 542 AAACAATTGGTTCATAAACCAGAGGAAACGGC--------C-ATCGAAGGATATGCAGTT 592
Query 541 TAAAGTCATGGACAACGTTTTGGACAATCCTTTCCC-CGTTGATCACATTTCCTCTAC-C 598
| ||||||||||||||||||||||| |||||||||| | ||||||| ||||||||| | |
Sbjct 593 TGAAGTCATGGACAACGTTTTGGACTATCCTTTCCCACATTGATCATATTTCCTCT-CTC 651
Query 599 ATACTT-G-ATACTTGCTTTGTGGTCTTAAATGTTCCAGTTTGATG 642
| | || | ||| || ||| | |||||||||||||||| |||||
Sbjct 652 A-A-TTCGCATA-TTACTTAGCAATCTTAAATGTTCCAGTCTGATG 694
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 635 GTTTGATGTTTTCATCAATCATTAGTGATTTT 666
||||||||||||||||||||||||||||||||
Sbjct 702 GTTTGATGTTTTCATCAATCATTAGTGATTTT 733
> AT1G16430.1 | Symbols: | Surfeit locus protein 5 subunit 22
of Mediator complex | chr1:5614619-5615510 FORWARD LENGTH=579
Length=579
Score = 586 bits (317), Expect = 9e-167
Identities = 389/425 (92%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 40 TCCGGTGGAGGAAGTGGCCCAACGGCTGCCGCCGCCGCCGCGGCTTTACAGAAGCAAAAG 99
|||||||||||||| || ||||| ||||| || || ||||| || |||||||||||||||
Sbjct 35 TCCGGTGGAGGAAGCGGACCAACAGCTGCTGCGGCAGCCGCTGCGTTACAGAAGCAAAAG 94
Query 100 GCGTTGTTGCAGAGAGTAGAGACTGACATCACATCTGTCGTCGATAACTTCACGCAAATC 159
||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 95 GCGTTGTTGCAGAGAGTTGATACTGACATCACATCTGTCGTCGATAACTTCAATCAAATC 154
Query 160 GTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGGAAGCTTACATGATG 219
|||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 155 GTCAATGTCGCAAGGGTGAGTGATCCGCCAATGAAGAACTCTCAGGAAGCATACATGATG 214
Query 220 GAGATGCGAGCTTCTAGACTGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGAATCGGAA 279
||||||||||| || ||| ||||||||||||||||||||||||||||||| | ||| ||
Sbjct 215 GAGATGCGAGCATCAAGATTGGTTCAAGCAGCTGATTCTCTTTTGAAACTTGTATCAGAG 274
Query 280 CTGAAGCAAACAGCGATTTTTTCAGGATTTGCATCGCTAAACGATCATGTAGAACAAAGA 339
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 275 CTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCATTAAACGATCATGTAGAACAAAGA 334
Query 340 ATAGGAGAGTTTGATCAAGAGGCCGAGAAGACAAATGGATTGTTGGCTAGAATAGCTGAT 399
|| | ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 335 ATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGATTGTTGGCTAGAATTGCTGAT 394
Query 400 GATGCATCTGCCAGTCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCTCAGAGATTG 459
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 395 GATGCATCTGCTAGTCTTAAAGAGCTTGAGTCTCACTATTACTCTTCTGCTCAGAGATCG 454
Query 460 ACTCT 464
|||||
Sbjct 455 ACTCT 459
> AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK
homeobox transcription factor | chr1:23058582-23061722 REVERSE
LENGTH=1363
Length=1363
Score = 119 bits (64), Expect = 4e-26
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 472 GAAACAGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCGGAGGA 531
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 984 GAAACAGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGA 1043
Query 532 TATGCAGTTTAAAGTCATGGAC 553
||||||||| ||| ||||||
Sbjct 1044 CATGCAGTTTGTAGTAATGGAC 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5