BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470848
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07960.2 | Symbols: ATPDIL5-1, PDIL5-1 | PDI-like 5-1 | chr1... 1203 0.0
> AT1G07960.2 | Symbols: ATPDIL5-1, PDIL5-1 | PDI-like 5-1 | chr1:2467189-2469139
FORWARD LENGTH=1241
Length=1241
Score = 1203 bits (651), Expect = 0.0
Identities = 751/798 (94%), Gaps = 11/798 (1%)
Strand=Plus/Plus
Query 48 GTTAACAGGACTGGTGAACTAT-AATAATTT-GGG-TTTGCTACGATGACGCTCGGTGCT 104
|||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| ||||||
Sbjct 449 GTTAACAGGACTGGTGAAGTATCAA-AATTTGGGGTTTTGCTACGATGACGCTAGGTGCT 507
Query 105 CGGCTTATTGCTCCCATGATTATACTTCTCCTTTTTGTACCGATTGAATTAGTTAAAGCG 164
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 508 CGGCTTGTTGCTCCCATGATTATACTTCTCCTTTTTATACCGATTGAATTAGTTAAAGCG 567
Query 165 GAAGTCATTACACTGACACCAGAAACCTTTTCTGACAAGATTAAGGAGAAAGATACTGCG 224
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 568 GAAGTCATTACACTGACACCAGAAACCTTTTCTGACAAGATAAAGGAGAAGGATACTGCG 627
Query 225 TGGTTTGTAAAGTTTTGTGTTCCTTGGTGTAAACACTGCAAGAAATTGGGGAATTTGTGG 284
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 628 TGGTTCGTAAAGTTTTGTGTTCCTTGGTGTAAACACTGCAAGAAACTGGGGAATTTGTGG 687
Query 285 GAAGAATTGGGAAAAGCAATGGAGGGAGACGATGAAATTGAAATTGGTGAAGTAGACTGT 344
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 688 GAAGACTTGGGAAAAGCAATGGAGGGAGACGATGAAATTGAGGTTGGTGAAGTAGACTGT 747
Query 345 GGTACTAGCAGAGCTGTTTGCACCAAAGTTGAAATTCACTCATATCCAACATTTATGCTA 404
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 748 GGTACTAGCAGAGCTGTTTGCACCAAAGTTGAAATTCACTCGTATCCAACATTTATGCTA 807
Query 405 TTTTACAATGGAGAAGAAGTTTCAAAATATAAAGGGAAAAGAGACGTTGAATCGCTTAAG 464
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 808 TTTTACAATGGAGAAGAAGTTTCGAAATATAAAGGAAAAAGAGACGTTGAATCGCTCAAG 867
Query 465 GCGTTTGTTATAGAGGAAACTGAAAAGGCAGCAGAAAAAGCGCAGCTTGAAGACAAGGAA 524
|| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 868 GCTTTTGTTGTAGAGGAAACTGAAAAGGCAGCAGAAAAAGCACAGCTTGAAGACAAGGAA 927
Query 525 CTGTGATACAACTAGTCAGTGATTATTAGAACCTGATACATTATTCCCTTTGGTTTTCAG 584
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 928 CTGTGATACAACTAGTCGGTGATTATTAGAACCTGATACATTGTTCCCTTTGGTTTTCAT 987
Query 585 TTTGCCTATGCAGTTGTGTGACTCTTACTGTTAGTTAGATAGGCATGGCTTCCAGCACGA 644
|||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 988 TTTGCCTATGCAGTTGTGTGACTCTTACCGTTAGTTAGATAGGCATGGTTTTCAGCACGA 1047
Query 645 TGGACGAACATCTTTGGCTTTAAAGGTTTTTTCACACCACTGTTTT-CTAAGATTTTCAG 703
|||| || ||||||||| ||||||||||||| |||||||||||||| |||| || |||||
Sbjct 1048 TGGAGGAGCATCTTTGGGTTTAAAGGTTTTT-CACACCACTGTTTTGCTAAAATATTCAG 1106
Query 704 TTTCCATTTTAT-CTACAGTCAGATAAGCAAAGGCAGAAGAAGTGCACTTAGTCGAGATT 762
|||||||||||| | | |||||||||||||||| | | | | ||| | ||||||||||||
Sbjct 1107 TTTCCATTTTATTC-AGAGTCAGATAAGCAAAGAC-GTA-A-GTGTAGTTAGTCGAGATT 1162
Query 763 TCTTACAAGTTTGTGTTGTATGTTCGTTTTAAGAGCAGCTGCAGACAAAAGTTCTTGCTT 822
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1163 TCTTACAAGTTTGTGTTGTATGTTCGTTTTAAGAGCAGCTGCAGACCAAAGTTCTTGCTT 1222
Query 823 TGAAATTTCATATTCAGT 840
| ||||||||||||||||
Sbjct 1223 TAAAATTTCATATTCAGT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5