BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470850

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07985.1 | Symbols:  | Expressed protein | chr1:2475405-2476...   809    0.0  


> AT1G07985.1 | Symbols:  | Expressed protein | chr1:2475405-2476155 
FORWARD LENGTH=751
Length=751

 Score =  809 bits (438),  Expect = 0.0
 Identities = 510/542 (94%), Gaps = 16/542 (3%)
 Strand=Plus/Plus

Query  1    CTCTATTAATAAGAGAAGACGAGTTTTACTTTCGATATACATACTGTCTTT-AACTATTC  59
            ||||||||||||||||||||||||||| ||||||      ||||||||||| ||||||||
Sbjct  5    CTCTATTAATAAGAGAAGACGAGTTTTGCTTTCG------ATACTGTCTTTCAACTATTC  58

Query  60   CGACACAACCAAAGCTTGTGAAAACGTTGTCGTTTG-------TAATGGCTGTTGTAGAA  112
            ||||||||||||||||| || |||||||||||||||       |||||||||||||||||
Sbjct  59   CGACACAACCAAAGCTTCTGGAAACGTTGTCGTTTGTTATCAATAATGGCTGTTGTAGAA  118

Query  113  GAACCGATACTTTCAAGATTGGATCGTATTGATTTCATGGTGAGGAAGCTAGAGGAGATG  172
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  119  GAACCGATACTTTCAAGATTGGATCGTATTGATTTCATGGTGAGGAAGTTAGAGGAGATG  178

Query  173  AAAGGAAGCTCGCCGAGAAGCTCGAGCCCATCGACTCCATCTAGTGGGACTCAGCCATCG  232
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  AAAGGAAGCTCGCCTAGAAGCTCGAGCCCATCGACTCCATCTAGTGGGACTCAGCCATCG  238

Query  233  TCAATGGATATGTCGTCACCGAGGAGCATAGGGAAGGTACAGTGCCGTTCGATGGAACAA  292
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  239  TCAATGGATCTGTCGTCACCGAGGAGCATAGGGAAGGTACACTGCCGTTCGATGGAACAA  298

Query  293  GTCATGGAGGAGACTGAGAGGAAAGGAACTTTGCTAGAAAGACTTAATAATGTAGAGGAG  352
            |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  299  GTCAGGGAGGAGACTGAGCGGAAAGGAACTTTGCTAGAGAGACTTAATAATGTAGAGGAG  358

Query  353  CAAGTTCTTAAGCTGTGTTCACAGTTTgaggaagaggttgaagaagagaggaagagagaa  412
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  359  CAAGTGCTTAAGCTGTGTTCACAGTTTGAGGAAGAAGTTGAAGAAGAGAGGAAGAGAGAA  418

Query  413  gataagacggataaggagaagaagacgccgaagaagaagaagagG-TTGAGGAAGCTAGT  471
            ||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||| ||
Sbjct  419  GATAAGACGGATAAGGAAAAGAAGACCCCGAAGAAGAAGAAG-GGATTGAGGAAGCTGGT  477

Query  472  TGATAAAGTTGTTGGATCTTCTTCTCCGACTAATATCCATTCCAAGAGCTGGCGTTGTTG  531
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  478  TGATAAAGTTGTTGGATCTTCTTCTCCCACTAATATCCATTCCAAGAGCTGGCGTTGTTG  537

Query  532  AG  533
            ||
Sbjct  538  AG  539


 Score = 82.4 bits (44),  Expect = 5e-15
 Identities = 51/54 (94%), Gaps = 2/54 (4%)
 Strand=Plus/Plus

Query  534  ATGTATACTTCAACGTACCACGTTTAAATTAAAGCTTCTCTTCCtttttt-ttt  586
            ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct  566  ATGTATACTTCAACGTACCACGTTTAAATGAAAGCTTCTCTTC-TTTTTTCTTT  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5