BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470852
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08010.1 | Symbols: GATA11 | GATA transcription factor 11 | ... 1476 0.0
AT1G08000.1 | Symbols: GATA10 | GATA transcription factor 10 | ... 1158 0.0
> AT1G08010.1 | Symbols: GATA11 | GATA transcription factor 11
| chr1:2485906-2488027 REVERSE LENGTH=1391
Length=1391
Score = 1476 bits (799), Expect = 0.0
Identities = 1083/1211 (89%), Gaps = 55/1211 (5%)
Strand=Plus/Plus
Query 18 ACCAACTCCGA-TTCGTCATCGTACGAC-TCTTtctctctctctct-ctc-tctGTGTAT 73
|||| |||| | |||||||||||||||| || ||||||||||||| ||| ||| |||||
Sbjct 93 ACCATCTCC-AGTTCGTCATCGTACGACGACTCTCTCTCTCTCTCTCCTCTTCTCTGTAT 151
Query 74 A-TCACAAGGT-TCGTGC-A-TCTATATAGTATAGCATGAATAGGTTACCTGAAGCTGAA 129
| || || | | | | | | || |||| ||||||||||| |||||||||||||||||
Sbjct 152 AGTC-GAA-TTATATTACAAGT-TAGATAG-ATAGCATGAATTGGTTACCTGAAGCTGAA 207
Query 130 GCTGAGGA-GCACTTCAAAGGCCTTCTCTCTGGTGATTTCTTTGATGATCTCATCAATCA 188
|||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 208 GCTGAGGATG-ACTTCAAAGGTCTTCTCTCTGGTGATTTCTTTGATGATCTCATCAATCA 266
Query 189 CCTTGACTG-CCCTCTTGAAGACATCGATTCCACCAATGTTGAGGGTGATTGGGTTGCCA 247
||||||| | ||||||||| ||||| ||| ||||||||| ||| || |||||||||| ||
Sbjct 267 CCTTGAC-GTCCCTCTTGATGACATTGATACCACCAATGGTGAAGGAGATTGGGTTGACA 325
Query 248 GGTTTCAAGACCTTGAGCCTCCCCCCATGGATATGTTTCCGAGTTTGCCTTCTGACCTCA 307
|||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||
Sbjct 326 GGTTTCAAGACCTTGAGCCTCCTCCCATGGATATGTTCCCCACTTTGCCTTCTGACCTCA 385
Query 308 TCTCTTG-TGC-C--AC-TGG---AGG----TCGTCTGGGGATTCAAAGGAACATGATTC 355
|||||| || | | ||| ||| |||| ||| |||||||||||| ||||
Sbjct 386 CCTCTTGCGGCTCTGGCATGGCCAAGGCCCCTCGTGTGGATATTCAAAGGAAC---ATTC 442
Query 356 CTGCTTTCAAACAGTCCTGTTCTTCTGAAGCCTTGTCCGGCATTAATACCACTCTCCACC 415
||||||| |||||||||| ||||||||||||||||| | | | |||||||||||
Sbjct 443 CTGCTTTGAAACAGTCCTATTCTTCTGAAGCCTTGT-C--C------AGCACTCTCCACC 493
Query 416 AATCTTCAGCTCCTCCTGATATCAAAGTTTCCAAGCTATTTCAGTCTTTAAGTCCAGTGT 475
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 494 AATCTTCAGCTCCTCCTGAAATCAAAGTTTCGAAACTATTTCAGTCTTTAAGTCCAGTGT 553
Query 476 CAGTTCTCGAGAACAGTTATGGTTCTCTCTCCACCCAGAACTCCGGATCTCAGAGATTGG 535
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 554 CAGTTCTCGAGAACAGTTATGGTTCTCTCTCGACCCACAACAATGGATCTCAGAGATTGG 613
Query 536 CTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAAACGCCCCACAACACTGAGACTTAGCT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAAACGCCCCACAACACTGAGACTTAGCT 673
Query 596 ACCTTTTCCCCTCTGAACCCAGAAAGCCCGAGAAGTCAACTCCTGGCGAATCAGAATCCG 655
|||||||||||||||||||| ||||||||||||||||||| || ||| || | |||||||
Sbjct 674 ACCTTTTCCCCTCTGAACCCCGAAAGCCCGAGAAGTCAACCCCGGGCAAACCTGAATCCG 733
Query 656 AGAGTTACTATTCTTCTGAGCAACATGCCAAGAAGAAACGCAAGATCCACCTGACCACCC 715
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AGTGTTACTTTTCTTCTGAGCAACATGCCAAGAAGAAACGCAAGATCCACCTGACCACCC 793
Query 716 GCACGGTGTCTTCCAGTTCTG-AGGCAAGCAACTCGGATGGGATAGTCCGGAAATGCACT 774
||||||| ||||||| | ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 794 GCACGGTCTCTTCCACT-CTGGAGGCAAGCAACTCGGATGGGATAGTCCGCAAATGCACT 852
Query 775 CATTGTGAGACAACCAAGACCCCGCAGTGGAGGGAAGGACCCAAAGGAC-GAAAGACCCT 833
||||| ||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||
Sbjct 853 CATTGCGAGACAACCAAGACCCCACAGTGGAGGGAAGGACCCAGTGGACCGAA-GACCCT 911
Query 834 CTGCAACGCTTGCGGGGTGCGGTTCAGATCTGGTCGTCTAGTTCCAGAATACCGACCAGC 893
|||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 912 CTGCAATGCTTGCGGAGTGAGGTTCAGATCTGGTCGCCTAGTTCCAGAATACCGACCAGC 971
Query 894 CTCAAGCCCGACCTTCATCCCATCAGTGCATTCAAACTCACACAGGAAGATCGTTGAAAT 953
||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||| ||
Sbjct 972 CTCAAGCCCCACCTTCATCCCAGCTGTGCATTCAAACTCACACAGGAAGATCATTGAGAT 1031
Query 954 GAGAAGGAAGGACGACGAACAGTTTGATACCAGCATGATTCGGGCAGTGATATCCAGAGG 1013
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1032 GAGAAGGAAGGACGACGAACAGTTTGATAGCAGCATGATTCGGGCAGTGATATCCAGAGG 1091
Query 1014 GTAAAGCAGTTTT------AA-GTTTGGTCTCTGATCCGCAGAAATGGGAACTCAGTGAA 1066
||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
Sbjct 1092 GTAAAGCAGTTTTTTTTTTAAAGTTTGGTCTCTGATCCGCAGAAATGGGAAGTCAGTGGA 1151
Query 1067 GGAAGAAGATGGTATAAAAGTAGGGGTTAGTGACTGTTTTCAAATCTGATGAAGAGAGTT 1126
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1152 GGAAGAAGATGGTATAAAAGTAGGGTTTAGTGACTGTTTTCAAATCTGATGAAGAGAGTT 1211
Query 1127 TAGGGGTTTAGTTGAAGTTAGGTATATTAAATATT--GTTGTTTGATTATGTGTTTTTAT 1184
||| ||||||||| |||||||| |||| ||||||| ||||||| |||||||||||||||
Sbjct 1212 TAGTGGTTTAGTTCAAGTTAGGGATATGAAATATTTTGTTGTTTCATTATGTGTTTTTAT 1271
Query 1185 CTTATATCTCT 1195
||| |||||||
Sbjct 1272 CTT-TATCTCT 1281
> AT1G08000.1 | Symbols: GATA10 | GATA transcription factor 10
| chr1:2483240-2485109 REVERSE LENGTH=1373
Length=1373
Score = 1158 bits (627), Expect = 0.0
Identities = 833/929 (90%), Gaps = 28/929 (3%)
Strand=Plus/Plus
Query 102 TAGCATGAATAGGTTACCTGAAGCTGAAGCTGAGGAGCACTTCAAAGGCCTTCTCTCTGG 161
||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 224 TAG-ATGAATTGGTTACCTGAAGCTGAAGCTGAGGAGCACTTGAAAGGTATTCTCTCTGG 282
Query 162 TGATTTCTTTGATGATCTCATCAATCACCTTGACTGCCCTCTTGAAGACATCGATTCCAC 221
|||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 283 TGATTTCTTTGATGGTCTCACCAATCACCTTGATTGCCCACTTGAAGACATCGATTCCAC 342
Query 222 CAATGTTGAGGGTGATTGGGTTGCCAGGTTTCAAGACCTTGAGCCTCCCCCCATGGATAT 281
||||| |||||| |||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 343 CAATGGTGAGGGAGATTGGGTCGCCAGGTTTCAAGACCTTGAGCCTCCTCCCTTGGATAT 402
Query 282 GTTTCCGAG-TTTGCCTTCTGACCTCATCTCTTGTGCCACTGGAG--G-TCGTCTGGGGA 337
| |||| | ||||||||||||||||| ||||||| ||| || | | |||| || |||
Sbjct 403 G-TTCCCTGCTTTGCCTTCTGACCTCACCTCTTGTCCCAAGGGCGCCGCTCGTGTGCGGA 461
Query 338 TT-CAAAGGAACATGATTCCTGCTTTCAAACAGTCCTGTTCTTCTGAAGCCTTGTCCGGC 396
|| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 462 TTCCCAA-CAACATGATTCCTGCTTTGAAGCAGTCCTGTTCTTCTGAAGCCTTGTCCGGC 520
Query 397 ATTAATACCACTCTCCACCAATCTTCAGCTCCTCCTGATATCAAAGTTTCCA-AGCTATT 455
||||||| ||||| ||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 521 ATTAATAGCACTCCCCACCAATCTTCAGCTCCTCCTGATATCAAAGTTT-CATATCTATT 579
Query 456 TCAGTCTTTAAGTCCAGTGTCAGTTCTCGAGAACAGTTATGGTTCTCTCTCCACCCAGAA 515
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 580 TCAGTCTCTAACTCCAGTGTCAGTTCTCGAGAACAGTTATGGTTCTCTCTCCACCCAAAA 639
Query 516 CTCCGGATCTCAGAGATTGGCTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAAACGCCC 575
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 640 CTCCGGATCTCAGAGATTGGCTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAGACGCCC 699
Query 576 CACAACACTGAGACTTAGCTACCTTTTCCCCTCTGAACCCAGAAAGCCCGAGAAGTCAAC 635
||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 700 CACAACAGTGAGACTTAGCTACCTTTTCCCCTTTGAACCCAGAAAG---------TCAAC 750
Query 636 TCCTGGCGAATCAG-AATCCGAGAGTTACTATTCTTCTGAGCAACATGCCAAGAAGAAAC 694
||| || ||||||| || ||||| |||||||||||||||||||||||||||||||||| |
Sbjct 751 TCCGGGTGAATCAGTAA-CCGAGGGTTACTATTCTTCTGAGCAACATGCCAAGAAGAAGC 809
Query 695 GCAAGATCCACCTGACCACCCGCACGGTGTCTTCCAGTTCTG-AGGCAAGCAACTCGGAT 753
||||||| || |||| ||||| ||| | |||||||| || || || |||| || ||||||
Sbjct 810 GCAAGATTCATCTGATCACCCACACCGAGTCTTCCACTT-TGGAGTCAAGTAAGTCGGAT 868
Query 754 GGGATAGTCCGGAAATGCACTCATTGTGAGACAACCAAGACCCCGCAGTGGAGGGAAGGA 813
||||||||||||| |||||||||||||||||||| || |||||| ||||||||| |||||
Sbjct 869 GGGATAGTCCGGATATGCACTCATTGTGAGACAATCACGACCCCACAGTGGAGGCAAGGA 928
Query 814 CCCAAAGGACGAAAGACCCTCTGCAACGCTTGCGGGGTGCGGTTCAGATCTGGTCGTCTA 873
|||| |||| ||||||||||||||||||||||| || ||||||| ||||||||| |||
Sbjct 929 CCCAGTGGACCCAAGACCCTCTGCAACGCTTGCGGAGTCCGGTTCAAATCTGGTCGCCTA 988
Query 874 GTTCCAGAATACCGACCAGCCTCAAGCCCGACCTTCATCCCATCAGTGCATTCAAACTCA 933
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 989 GTTCCAGAATACCGGCCAGCCTCAAGCCCGACCTTCATCCCATCTGTGCATTCAAACTCA 1048
Query 934 CACAGGAAGATCGTTGAAATGAGAAGGAAGGACGACGAACAGTTTGATACCAGCATGATT 993
|||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 1049 CACAGGAAGATCATTGAGATGAGAAAGAAGGACGACGA---GTTTGATACCAGCATGATT 1105
Query 994 CGGGCAGTGATATCCAGAGGGTAAAGCAG 1022
|| |||||||||||||| ||||||||||
Sbjct 1106 CG--CAGTGATATCCAGAAGGTAAAGCAG 1132
Score = 187 bits (101), Expect = 2e-46
Identities = 128/140 (91%), Gaps = 5/140 (4%)
Strand=Plus/Plus
Query 1066 AGGAAGAAGATGGTATAAAAGTAGGGGTTAGTGACTGTTTTCAAATCTGATGAAGAGAGT 1125
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGGAAGAAAATGGTATAAAAGTAGGGGTTAGTGACTGTTTTCAAATCTGATGAAGAGAGT 1195
Query 1126 TTAGGGGTTTAGTTGAAGTTAGGTATATTAA-ATATT-GTTGTTTGATTATGTGTTTTTA 1183
||||||||||||| |||||||| |||| || ||||| ||||||| |||||||| ||| |
Sbjct 1196 TTAGGGGTTTAGTC-AAGTTAGGGATAT-AACATATTTGTTGTTTCATTATGTGATTT-A 1252
Query 1184 TCTTATATCTCTCTCttttt 1203
|||||| |||||||| ||||
Sbjct 1253 TCTTATCTCTCTCTCATTTT 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5