BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470862
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08065.1 | Symbols: ATACA5, ACA5 | alpha carbonic anhydrase ... 1469 0.0
> AT1G08065.1 | Symbols: ATACA5, ACA5 | alpha carbonic anhydrase
5 | chr1:2511647-2513454 REVERSE LENGTH=1088
Length=1088
Score = 1469 bits (795), Expect = 0.0
Identities = 934/1000 (93%), Gaps = 14/1000 (1%)
Strand=Plus/Plus
Query 29 ATATATAGCACAA-AAAATGAAGATATCATCAATTGGATGCGTCGTTTTCCTTATCTTCA 87
||||||||||||| |||||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 97 ATATATAGCACAAGAAAATGAAGATACCATCAATTGGCTATGTCTTTTTCCTTATCTTCA 156
Query 88 TCTCTATTACAATTGTTTCGAGTTCACCAGATAATGGCGAAGTTGAGGACGAAACGCAGT 147
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 157 TCTCTATTACAATTGTTTCGAGTTCACCAGATCATGGAGAAGTTGAGGACGAAACGCAGT 216
Query 148 TTAACTACGAGAAGAAAGGAGAGAAAGGGCCAGATAATTGGGGAAGACTAAAGCCAGAGT 207
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 217 TTAACTACGAGAAGAAAGGAGAGAAGGGGCCAGAGAACTGGGGAAGACTAAAGCCAGAGT 276
Query 208 GGGCAATGTGTGGAAAAGGCAACATGCAGTCTCCGATTGATCTGACGGACAAAAGAGTCT 267
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 277 GGGCAATGTGTGGAAAAGGCAACATGCAGTCTCCGATTGATCTTACGGACAAAAGAGTCT 336
Query 268 TGATTGATCATAATCTTGGATACCTTCGTAGCCAGTATTTACCTTCAAATATCACCATAA 327
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 337 TGATTGATCATAATCTTGGATACCTTCGTAGCCAGTATTTACCTTCAAATGCCACCATTA 396
Query 328 AGAACAGAGGCCATGATATCATGATGAAATTTGAAGGAGGAAATGCAGGTTTAGGTATCA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AGAACAGAGGCCATGATATCATGATGAAATTTGAAGGAGGAAATGCAGGTTTAGGTATCA 456
Query 388 CTATTAATGGTACTGAATATAAACTTCAACAGATTCATTGGCACTCCCCTTCTGAACACA 447
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 457 CTATTAATGGTACTGAATATAAACTTCAACAGATTCATTGGCACTCTCCTTCCGAACACA 516
Query 448 CACTCAATGGCAAAAGGTTTGTTCTTGAGGAACACATGGTTCATCAGAGCAAAGATGGAC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CACTCAATGGCAAAAGGTTTGTTCTTGAGGAACACATGGTTCATCAGAGCAAAGATGGAC 576
Query 508 GCAATGCTGTAGTCGCTTTCTTTTACAAATTGGGAAAACCTGACTATTTCCTCCTTACGT 567
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 577 GCAACGCTGTTGTCGCTTTCTTTTACAAATTGGGAAAACCTGACTATTTTCTCCTCACGT 636
Query 568 TGGAAAGATACTTGAGGAAGATAACTGATACACATGAATCCGAGGAATACGTCG-GAATG 626
||||||||||||||| || ||||||||||||||| |||||| |||||| |||| || ||
Sbjct 637 TGGAAAGATACTTGAAGAGGATAACTGATACACACGAATCCCAGGAATTTGTCGAGA-TG 695
Query 627 ATTCATCCTAGAACATTCGATTTTGAATCAAGACACTATTATAGATATACCGGATCACTT 686
|||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct 696 GTTCATCCTAGAACATTCGGTTTTGAATCAAAACACTATTATAGATTTATCGGATCACTT 755
Query 687 ACAACTCCACCGTGTTCTGAAAATGTTATTTGGACGATTTCCAAAGAGATGAGGACTGTG 746
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 756 ACAACTCCACCGTGTTCTGAAAATGTGATTTGGACGATTTCCAAAGAGATGAGGACTGTG 815
Query 747 ACATTAAAACAATTGATCATGCTTCGCGTGACTGTACACGATCAATCTAA-TACAAATGC 805
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 816 ACATTAAAACAATTGATCATGCTTCGAGTGACTGTACACGATCAATCTAACT-CAAATGC 874
Query 806 GAGACCGCTTCAGCGTGAAAATGAGCGTCCGGTGGCACTTTACACACCAACATGGCATAT 865
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 875 TAGACCGCTTCAGCGTAAAAATGAGCGTCCGGTGGCACTTTACATACCAACATGGCATAG 934
Query 866 TAAACCATCTTAAATATTTAAGTTTGGTTG-TATTCGTTCTAATAATCTTTCAAATATCG 924
||||| || |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
Sbjct 935 TAAACTATATTAAATATTTAAGTTTGGTTTATATTCTTTCTAGTAATCTTTGAAATATTG 994
Query 925 TAAGAGATAA-GATAATGCTCCTAAATAATATTGGATTCATTGGAATTAATGTATTGACA 983
|||||||||| | | | || ||||||| |||||||| ||||||||||||||||||| |
Sbjct 995 TAAGAGATAATGCT--T-CTAATAAATAACATTGGATTTATTGGAATTAATGTATTGA-A 1050
Query 984 AAAACTAAGCAAATACTATATTAGTGTATTTTGGACCGAC 1023
||||||| |||||||||| | |||||||||||| ||||
Sbjct 1051 AAAACTATGCAAATACTACA---GTGTATTTTGGAACGAC 1087
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 CATCTCCTTGAAGTTGTTTCATAAGAATA 29
|||||||||||||||||||||||||||||
Sbjct 7 CATCTCCTTGAAGTTGTTTCATAAGAATA 35
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5