BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470866 Length=1622 Score E Sequences producing significant alignments: (Bits) Value AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitra... 2370 0.0 AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, AT... 1960 0.0 > AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitrate transporter 2.2 | chr1:2527170-2529120 REVERSE LENGTH=1709 Length=1709 Score = 2370 bits (1283), Expect = 0.0 Identities = 1513/1625 (93%), Gaps = 12/1625 (1%) Strand=Plus/Plus Query 1 AAACTTGAAATTTCTCAAAGGAACTTGATACGTTTTAAATTCATGGGTGATTCTAATGGT 60 ||||||||| ||||||||||||||||||||||||| |||| ||| || | ||||| || | Sbjct 1 AAACTTGAATTTTCTCAAAGGAACTTGATACGTTTAAAATACAT-GG-G-TTCTACTGAT 57 Query 61 GAACCCGGAAGCTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTA 120 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 GAGCCCGGAAGTTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTA 117 Query 121 GATACACCAACTGTGCCGACCAACACAAAGAAAAAGTACAACCTGCCGGTGGATGCAGAG 180 ||| | || ||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct 118 GAT---GGTAGTGAGCCGACCAACACAAAGAAAAAGTACAATCTGCCGGTGGACGCGGAG 174 Query 181 GATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCAAAACCTCATATGAGAACGTTCCAC 240 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 175 GATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATGAGAACGTTCCAC 234 Query 241 CTCTCGTGGATCTCTTTCTCAACATGTTTCGTCTCGACATTCGCTGCTGCACCACTTATC 300 |||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||||| Sbjct 235 CTCTCGTGGATCTCTTTCTCCACATGTTTTGTTTCGACGTTCGCAGCTGCACCACTTATC 294 Query 301 CCGATCATCAGGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCC 360 |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 295 CCGATCATCAGGGAGAATCTTAACCTCACCAAACATGACATTGGAAACGCTGGAGTTGCC 354 Query 361 TCAGTCTCTGGGAGTATTTTTTCTAGGCTGGTGATGGGAGCCGTGTGTGATCTTTTGGGT 420 || ||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 355 TCCGTCTCGGGGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGTGATCTTTTGGGT 414 Query 421 CCTCGTTACGGCTGTGCCTTCCTTGTGATGCTGTCTGCGCCAACGGTGTTCTCCATGAGT 480 ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 415 CCTCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTGTTCTCCATGAGC 474 Query 481 TTCGTGAGTGGA-GCCGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTCTGCCTGGC 539 ||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 475 TTCGTGAGT-GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTTTGCCTGGC 533 Query 540 GACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCACCAGTCAGATCATCGGTCT 599 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 534 GACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCAGATCATCGGTCT 593 Query 600 GGTAAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCAT 659 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 GGTGAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCAT 653 Query 660 GCCTATTGTGTATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCACGGCCTGGAGGAT 719 ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 654 GCCCATTGTGTATGAAATCATTAGGCGCTGCGGATCAACAGCGTTCACGGCCTGGAGGAT 713 Query 720 CGCCTTCTTTGTCCCCGGTTGGTTGCACATCATTATGGGAATCTTGGTGCTCACGCTAGG 779 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 714 CGCCTTCTTTGTCCCCGGTTGGTTGCACATCATCATGGGAATCTTGGTGCTCACGCTAGG 773 Query 780 TCAAGATCTGCCAGGTGGAAACCGAGCTGCCATGGAGAAATCGGGAGAAGTTGCCAAAGA 839 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 774 TCAAGATCTGCCAGGTGGAAACAGAGCTGCCATGGAGAAAGCGGGAGAAGTTGCCAAAGA 833 Query 840 CAAATTCGGAAAGATTCTGTGGTATGCCGTTACAAATTACAGGACTTGGATTTTCGTTCT 899 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 834 CAAATTCGGAAAGATTCTATGGTACGCCGTTACAAATTACAGGACTTGGATTTTCGTTCT 893 Query 900 TCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACTGACAATGTTATCGCCGAGTACTT 959 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 894 TCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACAGACAATGTTATCGCCGAGTACTT 953 Query 960 CTTTGACAGGTTTCACTTGAAACTTCACACAGCGGGGATCATAGCAGCGTGTTTCGGGAT 1019 |||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || Sbjct 954 CTTTGATAGGTTTCACTTGAAGCTTCACACAGCGGGGATTATAGCAGCATGTTTCGGAAT 1013 Query 1020 GGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAGGCGCTT 1079 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1014 GGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAAGCGCTT 1073 Query 1080 CGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCCGGTGGTCTCTTTTG 1139 ||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 1074 CGGAATGCGAGGGAGGTTGTGGACTTTGTGGATCATTCAGACGTCCGGTGGTCTCTTTTG 1133 Query 1140 TGTGTGGCTCGGTCGCGCCAACACGCTCATCACTGCCGTTGTATCTATGGTCCTCTTCTC 1199 |||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1134 TGTGTGGCTCGGACGTGCCAACACCCTCGTCACTGCCGTTGTATCTATGGTCCTCTTCTC 1193 Query 1200 TTTAGGAGCACAAGCCGCTTGTGGAGCCACCTTTGCAATCGTGCCCTTTGTCTCCCGGAG 1259 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | Sbjct 1194 TTTAGGAGCACAAGCCGCTTGCGGAGCCACCTTTGCTATCGTGCCCTTTGTCTCCCGGCG 1253 Query 1260 AGCTCTAGGCATTATCTCTGGTTTAACCGGAGCTGGAGGCAATTTTGGGTCTGGACTCAC 1319 |||||||||||||||||| ||||||||||| |||||||| || |||||||| |||||||| Sbjct 1254 AGCTCTAGGCATTATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTGGGTCAGGACTCAC 1313 Query 1320 ACAACTCGTCTTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGCTAACATGGATGGG 1379 ||| |||||||| |||||||| || | |||||||||||||||||||||||| |||||||| Sbjct 1314 ACAGCTCGTCTTTTTCTCGACTTCGCGCTTCACAACTGAAGAAGGGCTAACGTGGATGGG 1373 Query 1380 AGTGATGATAGTTGCTTGCACGTTGCCTGTGACCTTAATCCACTTTCCTCAATGGGGAAG 1439 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1374 AGTGATGATAGTTGCTTGCACGTTGCCTGTTACCTTAATCCACTTTCCTCAGTGGGGAAG 1433 Query 1440 CATGTTCTTGCCTCCCTCCAACGATTCGATCGATGCCACGGAGCATTATTATGTTTCCGA 1499 ||||||||| ||||| |||||||||||| |||| || |||||||| ||||||||| ||| Sbjct 1434 CATGTTCTTCCCTCCTTCCAACGATTCGGTCGACGCTACGGAGCACTATTATGTTGGCGA 1493 Query 1500 GTATAATAAGCAGGAGCAGCAGGAT-GGCATGCATTTAAAAAGCAT-CAAGTTTGCTGAG 1557 |||| |||| ||||||||||| || ||||||||||||||||||| | ||||||||| Sbjct 1494 ATATAGTAAGGAGGAGCAGCAG-ATTGGCATGCATTTAAAAAGCAAACT-GTTTGCTGAT 1551 Query 1558 GGAGCCAGGACCGAGGGCGGCCCCAGCGTCCACAATGGGAACATTTCCAACAATGCTTGA 1617 ||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||||| Sbjct 1552 GGAGCCAAGACCGAGGGAGGCAGCAGCGTCCACAAAGGGAACGCAACCAACAATGCTTGA 1611 Query 1618 TCATG 1622 ||||| Sbjct 1612 TCATG 1616 > AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524076-2526164 FORWARD LENGTH=1900 Length=1900 Score = 1960 bits (1061), Expect = 0.0 Identities = 1418/1589 (89%), Gaps = 29/1589 (2%) Strand=Plus/Plus Query 16 CAAAGGAACTTGATACGTTTTA-AATTC-ATGGGTGATTCTAATGGTGAACCCGGAAGCT 73 ||||| ||||||| | ||||| || | ||||||||||||| |||||| || || |||| Sbjct 37 CAAAGAAACTTGAAATATTTTATAA--CAATGGGTGATTCTACTGGTGAGCCGGGGAGCT 94 Query 74 CCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTAG--ATACACCAAC 131 ||||||||||||| |||||||||||||| |||| |||||||||||| | || |||||| Sbjct 95 CCATGCATGGAGTCACCGGTAGAGAACAAAGCTTTGCTTTCTCGGT-GCAAT-CACCAAT 152 Query 132 TGTGCCGACCAACACA-AAGAAAAAGTACAACCTGCCGGTGGATGCAGAGGATAAGGCAA 190 ||||| ||| ||| | | | |||| | |||| |||||||| ||||| ||||||||| Sbjct 153 TGTGCATACCGACA-AGACGGCCAAGTTCGACCTTCCGGTGGACACAGAGCATAAGGCAA 211 Query 191 CGGTTTTCAAGCTCTTCTCCTTCGCAAAACCTCATATGAGAACGTTCCACCTCTCGTGGA 250 ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct 212 CGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATGAGAACGTTCCATCTCTCGTGGA 271 Query 251 TCTCTTTCTCAACATGTTTCGTCTCGACATTCGCTGCTGCACCACTTATCCCGATCATCA 310 |||||||||| |||||||| |||||||| ||||| |||||||||||| |||| |||||| Sbjct 272 TCTCTTTCTCCACATGTTTTGTCTCGACTTTCGCAGCTGCACCACTTGTCCCTATCATCC 331 Query 311 GGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCCTCAGTCTCTG 370 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 332 GGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCCTCTGTCTCTG 391 Query 371 GGAGTATTTTTTCTAGGCTGGTGATGGGAGCCGTGTGTGATCTTTTGGGTCCTCGTTACG 430 ||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 392 GGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGTGATCTTTTGGGTCCCCGTTACG 451 Query 431 GCTGTGCCTTCCTTGTGATGCTGTCTGCGCCAACGGTGTTCTCCATGAGTTTCGTGAGTG 490 | |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| Sbjct 452 GTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTGTTCTCCATGAGCTTCGTGAGT- 510 Query 491 GA-GCCGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTCTGCCTGGCGACGTTTGTG 549 || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 511 GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTTTGCCTGGCGACGTTTGTG 570 Query 550 TCTTGTCAATACTGGATGAGCACTATGTTCACCAGTCAGATCATCGGTCTGGTAAACGGG 609 ||||||||||||||||||||||||||||||| |||||||||||| |||||||| || ||| Sbjct 571 TCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCAGATCATTGGTCTGGTGAATGGG 630 Query 610 ACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCATGCCTATTGTG 669 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 631 ACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCATGCCCATTGTG 690 Query 670 TATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCACGGCCTGGAGGATCGCCTTCTTT 729 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 691 TATGAAATCATTAGGCGCTGCGGTTCCACAGCCTTCACGGCCTGGAGGATCGCCTTCTTT 750 Query 730 GTCCCCGGTTGGTTGCACATCATTATGGGAATCTTGGTGCTCACGCTAGGTCAAGATCTG 789 || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 751 GTACCCGGTTGGTTGCACATCATCATGGGAATCTTGGTGCTCAATCTAGGTCAAGATCTG 810 Query 790 CCAGGTGGAAACCGAGCTGCCATGGAGAAATCGGGAGAAGTTGCCAAAGACAAATTCGGA 849 |||| |||||| |||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct 811 CCAGATGGAAATCGAGCTACCTTGGAGAAAGCGGGAGAAGTTGCCAAAGACAAATTCGGA 870 Query 850 AAGATTCTGTGGTATGCCGTTACAAATTACAGGACTTGGATTTTCGTTCTTCTGTATGGA 909 |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||| Sbjct 871 AAGATTCTGTGGTATGCCGTTACAAACTACAGGACTTGGATCTTCGTTCTTCTCTACGGA 930 Query 910 TATTCCATGGGAGTTGAGTTAAGCACTGACAATGTTATCGCCGAGTACTTCTTTGACAGG 969 || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 931 TACTCCATGGGAGTTGAGTTGAGCACTGATAATGTTATCGCCGAGTACTTCTTTGACAGG 990 Query 970 TTTCACTTGAAACTTCACACAGCGGGGATCATAGCAGCGTGTTTCGGGATGGCCAATTTC 1029 ||||||||||| || |||||||| ||| |||||||||| |||||||| |||||||||||| Sbjct 991 TTTCACTTGAAGCTCCACACAGCAGGGCTCATAGCAGCATGTTTCGGAATGGCCAATTTC 1050 Query 1030 TTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAGGCGCTTCGGGATGAGA 1089 |||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||| Sbjct 1051 TTTGCTCGTCCAGCAGGAGGCTACGCATCTGACTTTGCAGCCAAGTACTTCGGGATGAGA 1110 Query 1090 GGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCCGGTGGTCTCTTTTGTGTGTGGCTC 1149 |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 1111 GGGAGGTTGTGGACGTTGTGGATCATACAGACGGCTGGTGGCCTCTTCTGTGTGTGGCTC 1170 Query 1150 GGTCGCGCCAACACGCTCATCACTGCCGTTGTATCTATGGTCCTCTTCTCTTTAGGAGCA 1209 || ||||||||||| || | ||||||||||| ||||||| ||||||||| | || ||| Sbjct 1171 GGCCGCGCCAACACCCTTGTAACTGCCGTTGTGGCTATGGTGCTCTTCTCTATGGGGGCA 1230 Query 1210 CAAGCCGCTTGTGGAGCCACCTTTGCAATCGTGCCCTTTGTCTCCCGGAGAGCTCTAGGC 1269 ||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1231 CAAGCTGCTTGCGGAGCCACCTTTGCAATTGTGCCCTTTGTCTCCCGGCGAGCTCTAGGC 1290 Query 1270 ATTATCTCTGGTTTAACCGGAGCTGGAGGCAATTTTGGGTCTGGACTCACACAACTCGTC 1329 || ||||| ||||||||||| |||||||| || ||||| || || |||||||||||| || Sbjct 1291 ATCATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTGGATCAGGGCTCACACAACTCCTC 1350 Query 1330 TTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGCTAACATGGATGGGAGTGATGATA 1389 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1351 TTCTTCTCGACCTCACACTTCACAACTGAACAAGGGCTAACGTGGATGGGAGTGATGATA 1410 Query 1390 GTTGCTTGCACGTTGCCTGTGACCTTAATCCACTTTCCTCAATGGGGAAGCATGTTCTTG 1449 || ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1411 GTCGCTTGCACGTTACCTGTGACCTTAGTTCACTTTCCTCAATGGGGAAGCATGTTCTTG 1470 Query 1450 CCTCCCTCCA-ACGATTC-GATCGAT-GCCACGGAG-C--ATTATTATGTTTCCGAGTAT 1503 ||||| |||| | ||| | | | || | || ||| | ||||||||| ||| |||| Sbjct 1471 CCTCCTTCCACA-GATCCAG-T-GAAAGGTACAGAGGCTCATTATTATGGTTCTGAGTGG 1527 Query 1504 AATAAGCAGGAGCAGCAGGATGG-CATGCATTTAAA-AAGCATCAAGTTTGCTGAGGGA- 1560 ||| |||||||| ||||| | | ||||||| || |||| || |||||| ||| | Sbjct 1528 AATGAGCAGGAGAAGCAGAA-GAACATGCATC-AAGGAAGCCTCCGGTTTGCCGAGA-AC 1584 Query 1561 GCCAGGACCGAGGGCGGCC-CCAGCGTCC 1588 |||| | | ||||| || | || |||||| Sbjct 1585 GCCAAGTCAGAGGGTGGACGCC-GCGTCC 1612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80120069820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5