BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470866
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitra... 2370 0.0
AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, AT... 1960 0.0
> AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitrate
transporter 2.2 | chr1:2527170-2529120 REVERSE LENGTH=1709
Length=1709
Score = 2370 bits (1283), Expect = 0.0
Identities = 1513/1625 (93%), Gaps = 12/1625 (1%)
Strand=Plus/Plus
Query 1 AAACTTGAAATTTCTCAAAGGAACTTGATACGTTTTAAATTCATGGGTGATTCTAATGGT 60
||||||||| ||||||||||||||||||||||||| |||| ||| || | ||||| || |
Sbjct 1 AAACTTGAATTTTCTCAAAGGAACTTGATACGTTTAAAATACAT-GG-G-TTCTACTGAT 57
Query 61 GAACCCGGAAGCTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTA 120
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAGCCCGGAAGTTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTA 117
Query 121 GATACACCAACTGTGCCGACCAACACAAAGAAAAAGTACAACCTGCCGGTGGATGCAGAG 180
||| | || ||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 118 GAT---GGTAGTGAGCCGACCAACACAAAGAAAAAGTACAATCTGCCGGTGGACGCGGAG 174
Query 181 GATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCAAAACCTCATATGAGAACGTTCCAC 240
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 175 GATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATGAGAACGTTCCAC 234
Query 241 CTCTCGTGGATCTCTTTCTCAACATGTTTCGTCTCGACATTCGCTGCTGCACCACTTATC 300
|||||||||||||||||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct 235 CTCTCGTGGATCTCTTTCTCCACATGTTTTGTTTCGACGTTCGCAGCTGCACCACTTATC 294
Query 301 CCGATCATCAGGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCC 360
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 295 CCGATCATCAGGGAGAATCTTAACCTCACCAAACATGACATTGGAAACGCTGGAGTTGCC 354
Query 361 TCAGTCTCTGGGAGTATTTTTTCTAGGCTGGTGATGGGAGCCGTGTGTGATCTTTTGGGT 420
|| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 355 TCCGTCTCGGGGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGTGATCTTTTGGGT 414
Query 421 CCTCGTTACGGCTGTGCCTTCCTTGTGATGCTGTCTGCGCCAACGGTGTTCTCCATGAGT 480
||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 415 CCTCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTGTTCTCCATGAGC 474
Query 481 TTCGTGAGTGGA-GCCGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTCTGCCTGGC 539
||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 475 TTCGTGAGT-GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTTTGCCTGGC 533
Query 540 GACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCACCAGTCAGATCATCGGTCT 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 534 GACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCAGATCATCGGTCT 593
Query 600 GGTAAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCAT 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GGTGAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCAT 653
Query 660 GCCTATTGTGTATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCACGGCCTGGAGGAT 719
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 654 GCCCATTGTGTATGAAATCATTAGGCGCTGCGGATCAACAGCGTTCACGGCCTGGAGGAT 713
Query 720 CGCCTTCTTTGTCCCCGGTTGGTTGCACATCATTATGGGAATCTTGGTGCTCACGCTAGG 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 714 CGCCTTCTTTGTCCCCGGTTGGTTGCACATCATCATGGGAATCTTGGTGCTCACGCTAGG 773
Query 780 TCAAGATCTGCCAGGTGGAAACCGAGCTGCCATGGAGAAATCGGGAGAAGTTGCCAAAGA 839
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 774 TCAAGATCTGCCAGGTGGAAACAGAGCTGCCATGGAGAAAGCGGGAGAAGTTGCCAAAGA 833
Query 840 CAAATTCGGAAAGATTCTGTGGTATGCCGTTACAAATTACAGGACTTGGATTTTCGTTCT 899
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 CAAATTCGGAAAGATTCTATGGTACGCCGTTACAAATTACAGGACTTGGATTTTCGTTCT 893
Query 900 TCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACTGACAATGTTATCGCCGAGTACTT 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 894 TCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACAGACAATGTTATCGCCGAGTACTT 953
Query 960 CTTTGACAGGTTTCACTTGAAACTTCACACAGCGGGGATCATAGCAGCGTGTTTCGGGAT 1019
|||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 954 CTTTGATAGGTTTCACTTGAAGCTTCACACAGCGGGGATTATAGCAGCATGTTTCGGAAT 1013
Query 1020 GGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAGGCGCTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1014 GGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAAGCGCTT 1073
Query 1080 CGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCCGGTGGTCTCTTTTG 1139
||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1074 CGGAATGCGAGGGAGGTTGTGGACTTTGTGGATCATTCAGACGTCCGGTGGTCTCTTTTG 1133
Query 1140 TGTGTGGCTCGGTCGCGCCAACACGCTCATCACTGCCGTTGTATCTATGGTCCTCTTCTC 1199
|||||||||||| || |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1134 TGTGTGGCTCGGACGTGCCAACACCCTCGTCACTGCCGTTGTATCTATGGTCCTCTTCTC 1193
Query 1200 TTTAGGAGCACAAGCCGCTTGTGGAGCCACCTTTGCAATCGTGCCCTTTGTCTCCCGGAG 1259
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 1194 TTTAGGAGCACAAGCCGCTTGCGGAGCCACCTTTGCTATCGTGCCCTTTGTCTCCCGGCG 1253
Query 1260 AGCTCTAGGCATTATCTCTGGTTTAACCGGAGCTGGAGGCAATTTTGGGTCTGGACTCAC 1319
|||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||
Sbjct 1254 AGCTCTAGGCATTATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTGGGTCAGGACTCAC 1313
Query 1320 ACAACTCGTCTTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGCTAACATGGATGGG 1379
||| |||||||| |||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 1314 ACAGCTCGTCTTTTTCTCGACTTCGCGCTTCACAACTGAAGAAGGGCTAACGTGGATGGG 1373
Query 1380 AGTGATGATAGTTGCTTGCACGTTGCCTGTGACCTTAATCCACTTTCCTCAATGGGGAAG 1439
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1374 AGTGATGATAGTTGCTTGCACGTTGCCTGTTACCTTAATCCACTTTCCTCAGTGGGGAAG 1433
Query 1440 CATGTTCTTGCCTCCCTCCAACGATTCGATCGATGCCACGGAGCATTATTATGTTTCCGA 1499
||||||||| ||||| |||||||||||| |||| || |||||||| ||||||||| |||
Sbjct 1434 CATGTTCTTCCCTCCTTCCAACGATTCGGTCGACGCTACGGAGCACTATTATGTTGGCGA 1493
Query 1500 GTATAATAAGCAGGAGCAGCAGGAT-GGCATGCATTTAAAAAGCAT-CAAGTTTGCTGAG 1557
|||| |||| ||||||||||| || ||||||||||||||||||| | |||||||||
Sbjct 1494 ATATAGTAAGGAGGAGCAGCAG-ATTGGCATGCATTTAAAAAGCAAACT-GTTTGCTGAT 1551
Query 1558 GGAGCCAGGACCGAGGGCGGCCCCAGCGTCCACAATGGGAACATTTCCAACAATGCTTGA 1617
||||||| ||||||||| ||| |||||||||||| |||||| ||||||||||||||
Sbjct 1552 GGAGCCAAGACCGAGGGAGGCAGCAGCGTCCACAAAGGGAACGCAACCAACAATGCTTGA 1611
Query 1618 TCATG 1622
|||||
Sbjct 1612 TCATG 1616
> AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1,
ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524076-2526164
FORWARD LENGTH=1900
Length=1900
Score = 1960 bits (1061), Expect = 0.0
Identities = 1418/1589 (89%), Gaps = 29/1589 (2%)
Strand=Plus/Plus
Query 16 CAAAGGAACTTGATACGTTTTA-AATTC-ATGGGTGATTCTAATGGTGAACCCGGAAGCT 73
||||| ||||||| | ||||| || | ||||||||||||| |||||| || || ||||
Sbjct 37 CAAAGAAACTTGAAATATTTTATAA--CAATGGGTGATTCTACTGGTGAGCCGGGGAGCT 94
Query 74 CCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTAG--ATACACCAAC 131
||||||||||||| |||||||||||||| |||| |||||||||||| | || ||||||
Sbjct 95 CCATGCATGGAGTCACCGGTAGAGAACAAAGCTTTGCTTTCTCGGT-GCAAT-CACCAAT 152
Query 132 TGTGCCGACCAACACA-AAGAAAAAGTACAACCTGCCGGTGGATGCAGAGGATAAGGCAA 190
||||| ||| ||| | | | |||| | |||| |||||||| ||||| |||||||||
Sbjct 153 TGTGCATACCGACA-AGACGGCCAAGTTCGACCTTCCGGTGGACACAGAGCATAAGGCAA 211
Query 191 CGGTTTTCAAGCTCTTCTCCTTCGCAAAACCTCATATGAGAACGTTCCACCTCTCGTGGA 250
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 212 CGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATGAGAACGTTCCATCTCTCGTGGA 271
Query 251 TCTCTTTCTCAACATGTTTCGTCTCGACATTCGCTGCTGCACCACTTATCCCGATCATCA 310
|||||||||| |||||||| |||||||| ||||| |||||||||||| |||| ||||||
Sbjct 272 TCTCTTTCTCCACATGTTTTGTCTCGACTTTCGCAGCTGCACCACTTGTCCCTATCATCC 331
Query 311 GGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCCTCAGTCTCTG 370
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 332 GGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCCTCTGTCTCTG 391
Query 371 GGAGTATTTTTTCTAGGCTGGTGATGGGAGCCGTGTGTGATCTTTTGGGTCCTCGTTACG 430
||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 392 GGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGTGATCTTTTGGGTCCCCGTTACG 451
Query 431 GCTGTGCCTTCCTTGTGATGCTGTCTGCGCCAACGGTGTTCTCCATGAGTTTCGTGAGTG 490
| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 452 GTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTGTTCTCCATGAGCTTCGTGAGT- 510
Query 491 GA-GCCGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTCTGCCTGGCGACGTTTGTG 549
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 511 GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTTTGCCTGGCGACGTTTGTG 570
Query 550 TCTTGTCAATACTGGATGAGCACTATGTTCACCAGTCAGATCATCGGTCTGGTAAACGGG 609
||||||||||||||||||||||||||||||| |||||||||||| |||||||| || |||
Sbjct 571 TCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCAGATCATTGGTCTGGTGAATGGG 630
Query 610 ACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCATGCCTATTGTG 669
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 631 ACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCATGCCCATTGTG 690
Query 670 TATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCACGGCCTGGAGGATCGCCTTCTTT 729
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 691 TATGAAATCATTAGGCGCTGCGGTTCCACAGCCTTCACGGCCTGGAGGATCGCCTTCTTT 750
Query 730 GTCCCCGGTTGGTTGCACATCATTATGGGAATCTTGGTGCTCACGCTAGGTCAAGATCTG 789
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 751 GTACCCGGTTGGTTGCACATCATCATGGGAATCTTGGTGCTCAATCTAGGTCAAGATCTG 810
Query 790 CCAGGTGGAAACCGAGCTGCCATGGAGAAATCGGGAGAAGTTGCCAAAGACAAATTCGGA 849
|||| |||||| |||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 811 CCAGATGGAAATCGAGCTACCTTGGAGAAAGCGGGAGAAGTTGCCAAAGACAAATTCGGA 870
Query 850 AAGATTCTGTGGTATGCCGTTACAAATTACAGGACTTGGATTTTCGTTCTTCTGTATGGA 909
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 871 AAGATTCTGTGGTATGCCGTTACAAACTACAGGACTTGGATCTTCGTTCTTCTCTACGGA 930
Query 910 TATTCCATGGGAGTTGAGTTAAGCACTGACAATGTTATCGCCGAGTACTTCTTTGACAGG 969
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 931 TACTCCATGGGAGTTGAGTTGAGCACTGATAATGTTATCGCCGAGTACTTCTTTGACAGG 990
Query 970 TTTCACTTGAAACTTCACACAGCGGGGATCATAGCAGCGTGTTTCGGGATGGCCAATTTC 1029
||||||||||| || |||||||| ||| |||||||||| |||||||| ||||||||||||
Sbjct 991 TTTCACTTGAAGCTCCACACAGCAGGGCTCATAGCAGCATGTTTCGGAATGGCCAATTTC 1050
Query 1030 TTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAGGCGCTTCGGGATGAGA 1089
|||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||
Sbjct 1051 TTTGCTCGTCCAGCAGGAGGCTACGCATCTGACTTTGCAGCCAAGTACTTCGGGATGAGA 1110
Query 1090 GGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCCGGTGGTCTCTTTTGTGTGTGGCTC 1149
|||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 1111 GGGAGGTTGTGGACGTTGTGGATCATACAGACGGCTGGTGGCCTCTTCTGTGTGTGGCTC 1170
Query 1150 GGTCGCGCCAACACGCTCATCACTGCCGTTGTATCTATGGTCCTCTTCTCTTTAGGAGCA 1209
|| ||||||||||| || | ||||||||||| ||||||| ||||||||| | || |||
Sbjct 1171 GGCCGCGCCAACACCCTTGTAACTGCCGTTGTGGCTATGGTGCTCTTCTCTATGGGGGCA 1230
Query 1210 CAAGCCGCTTGTGGAGCCACCTTTGCAATCGTGCCCTTTGTCTCCCGGAGAGCTCTAGGC 1269
||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1231 CAAGCTGCTTGCGGAGCCACCTTTGCAATTGTGCCCTTTGTCTCCCGGCGAGCTCTAGGC 1290
Query 1270 ATTATCTCTGGTTTAACCGGAGCTGGAGGCAATTTTGGGTCTGGACTCACACAACTCGTC 1329
|| ||||| ||||||||||| |||||||| || ||||| || || |||||||||||| ||
Sbjct 1291 ATCATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTGGATCAGGGCTCACACAACTCCTC 1350
Query 1330 TTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGCTAACATGGATGGGAGTGATGATA 1389
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1351 TTCTTCTCGACCTCACACTTCACAACTGAACAAGGGCTAACGTGGATGGGAGTGATGATA 1410
Query 1390 GTTGCTTGCACGTTGCCTGTGACCTTAATCCACTTTCCTCAATGGGGAAGCATGTTCTTG 1449
|| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1411 GTCGCTTGCACGTTACCTGTGACCTTAGTTCACTTTCCTCAATGGGGAAGCATGTTCTTG 1470
Query 1450 CCTCCCTCCA-ACGATTC-GATCGAT-GCCACGGAG-C--ATTATTATGTTTCCGAGTAT 1503
||||| |||| | ||| | | | || | || ||| | ||||||||| ||| ||||
Sbjct 1471 CCTCCTTCCACA-GATCCAG-T-GAAAGGTACAGAGGCTCATTATTATGGTTCTGAGTGG 1527
Query 1504 AATAAGCAGGAGCAGCAGGATGG-CATGCATTTAAA-AAGCATCAAGTTTGCTGAGGGA- 1560
||| |||||||| ||||| | | ||||||| || |||| || |||||| ||| |
Sbjct 1528 AATGAGCAGGAGAAGCAGAA-GAACATGCATC-AAGGAAGCCTCCGGTTTGCCGAGA-AC 1584
Query 1561 GCCAGGACCGAGGGCGGCC-CCAGCGTCC 1588
|||| | | ||||| || | || ||||||
Sbjct 1585 GCCAAGTCAGAGGGTGGACGCC-GCGTCC 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80120069820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5