BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470871
Length=2433
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08135.1 | Symbols: ATCHX6B, CHX6B | cation/H+ exchanger 6B ... 3142 0.0
> AT1G08135.1 | Symbols: ATCHX6B, CHX6B | cation/H+ exchanger 6B
| chr1:2548819-2551473 REVERSE LENGTH=2391
Length=2391
Score = 3142 bits (1701), Expect = 0.0
Identities = 1974/2106 (94%), Gaps = 17/2106 (1%)
Strand=Plus/Plus
Query 332 TCTTAAATGAGGTGTTTGGATCGATGCAAATATCATGTTTTAAGCATATATTTATCCATG 391
|||||| |||| |||||||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 299 TCTTAAGTGAGATGTTTGGATCTATGCAAATACCATGTTTAAAGCATATATTTATCCATT 358
Query 392 ATAACAAGTATATGCCAAAGGTTGCTGATACTATAGGTGCATTTGCTTTTGTCCTAGATT 451
||||| |||||||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 359 ATAACCAGTATATGACAAAGGTTCCTGATACTATAGGCGCATTTGCTTTTGTCCTAGATT 418
Query 452 GGTTCCTAAGAGGAGTGACTACGGATGTTGGAATAATCAAAAAGTCAGGAACTAAGAGTG 511
|||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 419 GGTTTCTAAGGGGAGTGACTACAGATGTTGGAATAATGAAAAAGTCAGGAACTAAGAGTG 478
Query 512 TTGTAATTGGAATCACCTCAATGATCATCCCATGGCAAATAGGAAAACTCCTTTATTCAT 571
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGTAATTGGGATCACCTCAATGATCATCCCATGGCAAATAGGAAAACTCCTTTATTCAT 538
Query 572 CTAGAGAGAAATCAAGTATCCTGACCATGACAGAAAACGAGTATAACGTAATGACATTCA 631
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct 539 CTAGAGAGAAATCAAGTATTCTGACCATGACAGAAATGGAGTATACCGTAATGACATTCA 598
Query 632 CCATGAGCATGACGCCTTTCACGTGCGTCAACATGTTGCTTACTGACCTCAAGATAGTTC 691
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 CAATGAGCATGACGCCTTTCACTTGCGTCAACATGTTGCTTACTGACCTCAAGATAGTTC 658
Query 692 ACACTGATTTCGGCCAAATAGCTCAGTCATCGGGAATGGTAACCGATGTGCTTGCCTTTT 751
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 659 ACACTGATTTCGGCCAAATAGCTCAGTCAGCGGGAATGGTAACAGATTTGCTTGCCTTTT 718
Query 752 TCTTGACTGTATGGGCTTACATTAGCCGTGATGAAACTCAAGGAGTGAAGATGGGATTTG 811
|||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 719 TCTTGACTGTATCGGCTTACGTTAGCCGTGATGAAACTCAAGGAGTGAAAATGGGATTAG 778
Query 812 CTTTTATGGCATTCTTCATTTTTGTGTACCTTGTGCGACAATTTATGCTGTGGGTAATCA 871
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 779 CTTTTATGGCATTCTTTATTTTTGTGTACCTTGTGCGACAATTTATGCTTTGGGTTATAA 838
Query 872 GACATACCCCAGAGGGAGCGCCAGTGAAGAACATCTATCTCTACATTGGTCTCTTGCTGG 931
||||||| ||||| ||||| || ||||||||| ||||||||||||||||||||||||| |
Sbjct 839 GACATACGCCAGAAGGAGCCCCGGTGAAGAACGTCTATCTCTACATTGGTCTCTTGCTTG 898
Query 932 CTTACTTATCTTATCTTTACTGGAACCGCTTCTTATTCTTCGGACCGCTGGGGGCATTTG 991
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 899 CTTACTTATCTTATCTTTATTGGAGCCGCTTCTTATTCTTCGGACCGCTAGGGGCATTTG 958
Query 992 TTCTTGGTTTGGCTGTCCCTAACGGACCGCCTTTAGGATCGGTATTTATACAAAAATTCG 1051
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 959 CTCTTGGTTTGGCTGTCCCTAACGGGCCGCCATTAGGATCAGTATTTATACAAAAATTCG 1018
Query 1052 ATAGCTTCAATGAGGGCAtttttttACCCCTCTTTGGCTCACTTAGCATGATTAAACTAG 1111
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1019 ATAGCTTCAACGAGGGCATTTTTTTACCCCTCTTTGGATCACTTAGCATGATCAAACTAG 1078
Query 1112 ATTGGTCATTTCTACGGAAGGAGTTTGGAGATGAGTTTGGAGATGGAAAACATCTCCATG 1171
|||||||||||||||| |||||||||||| | | |||| | || ||||||||||
Sbjct 1079 ATTGGTCATTTCTACGAAAGGAGTTTGGA-A--A---TGGA-A-GG----CATCTCCATG 1126
Query 1172 GACATATGTACGAGTGTTTTTCATTCCTTCCCATCGTATACATAGCGAAATTCGGTACTT 1231
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1127 GACATATGTACGAGTGTTTTTCCTTCCTTCCCATCGTATACATAGCGAAATTCGCTACTT 1186
Query 1232 CGTTTTTAGCCGCCATAGCTACAAAGATACCTTTGAGAGACTCAATTATCCTAGCTGTCA 1291
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1187 CGTTTTTAGCCGCCTTAGCTACAAAGATACCTTTGAGAGACTCAATTATCCTAGGTGTCA 1246
Query 1292 TTATGGGCACCAAGAGTAGTTTTGAGTTGGCTTACGTACTCACAGCCTTCGAAAAATACA 1351
|||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||
Sbjct 1247 TTATGGGCACCAAGAGTAGTTTCGAGTTGGGTTACGTACTTACAGCCTTCGAAAAAGACA 1306
Query 1352 GGATTAGTCTGGAGGTTTTGTCGCTCCTGGGCGTATACATTCTCGTAAACTCTTTGTTAA 1411
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GGATTAGTCTGGAGGTCTTGTCGCTCCTGGGCGTATACATTCTCGTAAACTCTTTGTTAA 1366
Query 1412 CACCAATGGCTATACATTTCTTGTATGACCGGTCTAAAAGATTTGTGTGTTACGGAAGAA 1471
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1367 CACCAATGGCTATACATTTCCTGTATGACCGGTCTAAGAGATTTGTGTGTTACGGAAGAA 1426
Query 1472 GAAACTTGAAACAGAAGTCAGAACTGCAAACGCTGGTGTGCATCAACAAGCCTGACAACA 1531
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1427 GAAACTTGAAAGAGAAGCCAGAAATGCAAACGCTGGTGTGCATCAACAAGCCTGACAACA 1486
Query 1532 TAACATCGATGATTAGCCTTCTCAGAGCAACTTCCCCATCTAAAGACTCTCCAATGGAGT 1591
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1487 TAACATCGATGATTAGCCTTCTTAGAGCAACTTCCCCATCTAAAGACTCTCCAATGGAAT 1546
Query 1592 GTTGTGTTCTGCACCTAATAGAGTTACAAGGTCAAGCTACTCCCACGTTTATCTCCCACC 1651
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1547 GTTGTGTTCTTCACCTAATAGAGTTATTGGGTCAAGCTACTCCCACGTTTATCTCCCACC 1606
Query 1652 AGCTTCAGAAACCAAAGCCTGGAAGTCGGTCTTACTCCGAAAATGTCATAAGCTCTTTCC 1711
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1607 AGCTTCAAAAACCAAAGCCTGGAAGTCGGTCTTATTCCGAAAATGTCATAAGCTCTTTCC 1666
Query 1712 AACTGTTTCAAGAGATTTATTGCGACTCCGCTTCCATAAACATGTTCACGTCTTTAACTT 1771
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1667 AACTGTTTCAAGAGGTTTATTGGGACTCCGCTTCCATAAACATGTTCACGTCTTTAACTT 1726
Query 1772 CCGCTAAAGAGATGCATGAACACATATGTTGGTTTGCTCTTAGTCAAGGTTCAAATCTTA 1831
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1727 CCGCTAAAGAGATGCATGAACAAATATGTTGGTTTGCTCTTAGTCAAGGTTCCAATCTTA 1786
Query 1832 TTCTCCTCTCGTTTCACCGCACTTGGGGGCCTGACGGAAGTGTCGTTATCTCAGACGATC 1891
||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||
Sbjct 1787 TTCTCCTCTCGTTTCACCGCACTTGGGAGCCTAACGGAAATGTCATTATCTCAGACGATC 1846
Query 1892 AAACCCTAAGAACCCTTAATCGTAATGTTCTGAAACGAGCCCCTTGTTCTGTCGGAATCT 1951
|||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1847 AAACCCTAAGAAGTCTTAATCTTAATGTTCTGAAACGCGCCCCTTGTTCTGTCGGAATCT 1906
Query 1952 TCGTTTATCGCAAACCAATTTGGCAAACCAAAGCCCTAGAATCTCCATGCCGTGTGTGCT 2011
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1907 TTGTTTATCGCAAACCAATTTGGCAAACCAAAGCCCTAGAATCTCCGTGCCGTGTGTGCT 1966
Query 2012 TGATTTATGTGGGTGGGAATGACGACAAAGAAGCCCTGGCATTAGCTGACCACATGAGAG 2071
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1967 TGATTTACGTGGGTGGGAATGACGACAAAGAGGCCCTGGCATTAGCTGACCACATGAGAG 2026
Query 2072 GTAACCAACAAGTGATTCTAACGGTGATGCGTTTGATCCCTGCGTCTCATGCCGATGATA 2131
||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| |
Sbjct 2027 GTAACCAACAAGTGATTCTAACGGTCTTGCGTCTGATCCCTACGTCTTATGCCGATGAGA 2086
Query 2132 TTAGCAAGAGGATTCATAGTCAAATGGTAGACATGAACCGTCATGAAGAT-A--GGCCTC 2188
|||| |||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 2087 GTAGCTTGAGGATTCATAGCCAAATGGTAGACATGAACCGTCATGAAGACCAAAGGCCTG 2146
Query 2189 GAGATGACTCAATCATCATTGATTGGACGGTGGGGGATGGTACAGAGACTTCCAAGATTT 2248
||||| | |||| ||||||||| ||||||||||| ||||| |||||||| ||||| ||||
Sbjct 2147 GAGATAAGTCAACCATCATTGACTGGACGGTGGGAGATGGCACAGAGACATCCAAAATTT 2206
Query 2249 TGCACTCCGTGGCTTACGACTATGATCTATTTATAGTCGGTAGAAGAAGTGGGTTTGGTA 2308
||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 2207 TGCACTCCGTGTCTTACGACTATGATCTATTCATAGTCGGTCGAAGAAGTGGGGTTGGTA 2266
Query 2309 CTACAGTCACTAGAGGACTCGGGGATTGGATGGAATTCGAAGAACTTGGAATCATTGGAG 2368
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2267 CTACAGTCACCAGAGGACTCGGGGATTGGATGGAATTCGAAGAACTTGGAGTCATTGGAG 2326
Query 2369 ATTTGTTAGCATCTGAATATTTTCCTTCTAGAGCCTCCGTGTT-GATCGTGCAACAACAA 2427
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 2327 ATTTGTTAGCATCTGAATATTTTCCTTCTAGAGCCTCCGTGTTAG-TCGTCCAACAACAA 2385
Query 2428 GAATGA 2433
|| |||
Sbjct 2386 GAGTGA 2391
Score = 475 bits (257), Expect = 8e-133
Identities = 279/290 (96%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1 ATGGATGCAGAAAATGCGACTTGGCGCAAAGAGCTCATGTGGGACGACGATGGGAAAAGA 60
||||||||||||||||||||||||||||||||| |||||||| || |||||| |||||||
Sbjct 1 ATGGATGCAGAAAATGCGACTTGGCGCAAAGAGTTCATGTGGAACAACGATGAGAAAAGA 60
Query 61 GCAGAGATGGGGACGAAGATGTTTTGCGATGTAAGTCCACATATAATGTTGAACTCACAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAGAGATGGGGACGAAGATGTTTTGCGATGTAAGTCCACATATAATGTTGAACTCACAT 120
Query 121 GGCGTTTCAGAGAAAATGGATTCTGGATATAAGGGAATGGAATTTTGGGAGTACCCTCTT 180
|||||| |||||||||||| ||| |||| |||||||||||| ||||||||||||||||||
Sbjct 121 GGCGTTGCAGAGAAAATGGCTTCCGGATCTAAGGGAATGGATTTTTGGGAGTACCCTCTT 180
Query 181 CCACAATTGGAGATCATAATTCTCTCCATATTCCTATTATGGCGCTTATTTGATATGTTG 240
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CCACAATTGGAGATCATTATTCTCTCCATATTCCTATTATGGCGTTTATTTGATATGTTG 240
Query 241 TTCAAGAAGTTAGGTGTTCCTATCCCCAAGTTCACCTCCATGATGCTTGT 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAAGAAGTTAGGTGTTCCTATCCCCAAGTTCACCTCCATGATGCTTGT 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120832711815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5