BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470872
Length=2672
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08140.1 | Symbols: ATCHX6A, CHX6A | cation/H+ exchanger 6A ... 4060 0.0
> AT1G08140.1 | Symbols: ATCHX6A, CHX6A | cation/H+ exchanger 6A
| chr1:2552036-2555161 REVERSE LENGTH=2714
Length=2714
Score = 4060 bits (2198), Expect = 0.0
Identities = 2519/2677 (94%), Gaps = 10/2677 (0%)
Strand=Plus/Plus
Query 1 AATCGAACTACAAACCCTAAATCATTCCATTAGATTTTCTTGATCCCTAAGCAATTCTCT 60
||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 AATCGAATTACAAACCCTAAATCATTCCATTAGATCTTCTTGATCCCTAAGCAAGTCTCT 60
Query 61 TCGTTAACTTTTGACTTTCTCCTTAAAATGGATACAGAGCAGATGGACATGAGTTATTGG 120
||||||||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 61 TCGTTAACTTTTGTCTTTCTCCTTAAAATGGCTACAGAGGAGATAGACATGAGTTATTGG 120
Query 121 GACATGACATGGCGAGAATACAATGAAGACAACAACACGTCTCGCTTCTGCGAGACACAC 180
||| || ||||| |||||| |||||||||||| ||| ||||| |||||||||| |||||
Sbjct 121 GACGTGTCATGGGGAGAATTCAATGAAGACAAGAACTCGTCTATCTTCTGCGAGTCACAC 180
Query 181 CCTTACATAGTAAATTCGCACGGGATATGGGAAGTTTTGACTTACAAGAGAGGGATGAAA 240
||| |||||||||||||||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 181 CCTCACATAGTAAATTCGCACGGGATATGGGAGGTTATGACTTTCAAGAGAGGGATGAAC 240
Query 241 TTCTGGGAATATCCGCTACCGAATCTTGAGATCTTAATCTTTTCTACTTTTTTAATATGG 300
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 TTCTGGGAATATCCGCTCCCGAATCTCGAGATCTTAATCTTTTCTACTTTTTTTATATGG 300
Query 301 CGGCTTCTCGACATCTCATTCAACAGAATTGGTCTTCGAGTACCTAGATTCACCTATATG 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 301 CGGCTTCTCGACATCTCATTCAACAAAATTGGTCTTCGAGTACCTAGATTCACATATATG 360
Query 361 ATGATCGCAGGGATAATCTTAGGTCAAACTTGCCATGTAAGCAACAAGTCTTGGCTCCAT 420
||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||
Sbjct 361 ATGATCGCAGGGATAATTTTAGGTCAAACTTGCCATTTCAGCAACAAGTCTTGGATCCAT 420
Query 421 AACAtttttttCCCTGATGATAACCGACCAAAGGTCGCCGAGACGCTAGGGGCTTTCGGC 480
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 421 GACATTTTTTTCCCTGATGATAACCGACCAAAGGTGGCCGAGACCCTAGGGGCTTTCGGC 480
Query 481 TTCGTTTTATATTGGTTCCTCAAAGGTGTGACCATGGATGCCGAATTGCCATTTAAGACG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TTCGTTTTATATTGGTTCCTCAAAGGTGTGACCATGGATGCCGAATTGCCATTTAGGACG 540
Query 541 GAGAAAAGGTCTAGTGTGATCGGATTCATTACAGTATTTATACCCTTGATTTGTGGCAGC 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 GAGAAAAGGTCTAGTGTGATCGGATTCATTACAGTAATTATACCCTTGATTTGTGGCAGC 600
Query 601 CTCACATTTAGATGGAGAGAACGAAGAGGGAACAT-AAGCTTGTTAAGGACGGAGTACAG 659
||||| ||||||| ||||||||||||||| || | |||| | ||||||| ||| |||||
Sbjct 601 CTCACTTTTAGATATAGAGAACGAAGAGGGGAC-TCAAGCATATTAAGGATGGAATACAG 659
Query 660 GTTGATCATATTCTTGCAAAGCATATCCGCGTTCACTAGCATTGACACACTCTTAAAAGA 719
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 660 GTTGATCATATTCTTGCAAAGCATATCCGCGTTCACGAGCATCGACACACTCCTAAAAGA 719
Query 720 CCTCCAGATCAAACACTCAGAGTTTGGGCGGATAGCCCTCTCTGGGGCTATGGTGACTGA 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 CCTCCAGATCAAACACTCAGAGTTTGGGAGGATAGCCCTCTCTGGGGCTATGGTGACTGA 779
Query 780 CATGTTGGCTTTTGTTGTTACATTTTTCAATGCAATCTACTGGGAAGGATAT-TACGGCT 838
|||||||||||||| ||| |||||||| ||||||||||||| ||| || | |||||||
Sbjct 780 CATGTTGGCTTTTGGTGTAACATTTTTTAATGCAATCTACTACGAAAAAT-TGTACGGCT 838
Query 839 TTATGCAAACCATAGGTTTCTGCCTCTTTGTCGTCGTTATGATCTTCGTTGTGAGGCCAA 898
| ||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 839 TCATGCAAACCGTAGGTTTCTGCCTCTTTGTCGTCGTTATGATATGCGTTGTGCGGCCGG 898
Query 899 CTATGTATTGGGTGATCAAGCAGACTCCAGAAGGGAGGCCGGTCAAGGATTTCTACCTCT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTATGTATTGGGTGATCAAGCAGACTCCAGAAGGGAGGCCGGTCAAGGATTTCTACCTCT 958
Query 959 ACTCGATTTTTGGGCTTGCTTTCGCCTCCTTCACCTTTTTTGACAAGGCTATTCATCTTT 1018
|||||||||||||| |||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct 959 ACTCGATTTTTGGGATTGCTTTCGCCTGCTTCACTTTTTTTAACAAGGTTATTCATCTTT 1018
Query 1019 TTGGACCTGCGGGATCATTTGTTTTTGGCTTGACTGTTCCGAATGGATATCCATTAGGTG 1078
||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 1019 TTGGACCCGCGGGATCATTTGTTTTCGGCTTGACGGTTCCAAATGGATATCCTTTAGGTA 1078
Query 1079 CTACTTTGGTTCAAAAGTTTGAGAGCTTTAATCTTGGAGCTATCTTGCCACTCTTTGGAT 1138
|||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1079 CTACTTTGATTCAAAAGTTTGAGAGCTTTAATCTTGGCTCTATTTTGCCACTCTTTGGAT 1138
Query 1139 CATTAACCATGATGCAAGTAGATCTCTTATGGTTGGTCAAAGAGAGTGGAAATTTCATAC 1198
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| ||||
Sbjct 1139 CATTAACCATGATGCAAGTAGATCTCTTACGGTTGTTCAAAGAGAGTGGAGATTTAATAC 1198
Query 1199 GGATGGAGGGTCAAATCTATGAGGTCATTTCCTTTATTCTTTTGGTGAATA-CAGTAAAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1199 GGATGGAGGGTCAAATCTATGAGGTCATTTCCTTTATTCTTTTGGTGAATACCA-CAAAA 1257
Query 1258 TTCGTTGTTACCACCATAGCCGCGTATGCTTTTAAAATGCCCTTGAGAGACTCTTTTGCT 1317
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTCGTTGTTACCACCATAACCGCGTATGCTTTTAAAATGCCCTTGAGAGACTCTTTTGCT 1317
Query 1318 TTAGCCCTTGTGCTTAGTAATAAGGGGATCTTCGAGCTCGCCTACTACACGTTCGCGGTT 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1318 TTAGCCCTTGTGCTTAGTAATAAGGGGATCTTCGAGCTCGCCTACTACACGTACGCGGTT 1377
Query 1378 GAAATAAAGCTAATAAGGCCAGAGGTTTTCACAATCCTAGCAGCCTTCTCCCTCTTGAAT 1437
||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 1378 GAATTAAAGCTAATAAGGCCAGAGGTTTTCACAATCCTAGCTGCCTACACCCTCTTGAAC 1437
Query 1438 TCTATCTTTATACCAATGCTCTTGGAGCTCGTGCATGACCCAACCAAAAGATTCAAATGC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1438 TCTATCTTTATACCAATGCTCTTGGAGCTCGTGCATGACCCAACCAAAAGATTCAGATGC 1497
Query 1498 TACCGAAAAAGGAATTTGGGCATCTTGAAAGACGGTGCGGCTCTCCAATGTCTTATGTGC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TACCGAAAAAGGAATTTGGGCATCTTGAAAGACGGTGCGGCTCTCCAATGTCTTATGTGC 1557
Query 1558 GTCTACAAACCTGATCACATAACTTCCATGATCGACCTTTTGGAAACATTTAACCCATCA 1617
||||||| ||||||||||||||||||||||| |||||| |||||||| |||| |||||||
Sbjct 1558 GTCTACAGACCTGATCACATAACTTCCATGACCGACCTCTTGGAAACTTTTAGCCCATCA 1617
Query 1618 CAAGATTCTCCAATGGCGTGTAACACACTTCACCTCGTCGAACTTGTGGGTCAAGCCAAT 1677
|||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1618 CAAGATTCCCCAATGGCGTGTAACATACTTCACCTCGTCGAGCTTGTGGGTCAAGCCAAT 1677
Query 1678 CCTATGTTCATTTCCCACCAGTTGCAACAACCAGAGCCCGGAAGTACTTCTCTTTCCGAC 1737
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 1678 CCTATGTTCATTTCCCACCAGTTGCAAAAACCAGAGCCCGGAAGTACTTCTCTGTCTGAC 1737
Query 1738 AATGTCATAATCTCCTTCCGTCGCTTCCAAAGACAATTCTTTGAATTTACATCGTTGGAT 1797
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1738 AATGTCATAATCTCCTTCCGTGGCTTCCAAAGACAATTCTTTGAATACACATCGTTGGAT 1797
Query 1798 ATTTTTACTTCCGTCTCCTTGTCCCAACACATGCATGAGGACATTTGTTGGCTAGCCCTA 1857
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 ATTTTCACTTCCGTCTCCGTGTCCCAACACATGCATGAGGACATTTGTTGGCTAGCCCTA 1857
Query 1858 TCCAGAAGTCTATCTCTGATTGTGCTTCCTTTCCACCGAACCTGGTCCGTTGATCGATCC 1917
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TCCAGAAGCCTATCTTTGATTGTGCTTCCTTTCCACCGAACCTGGTCCGTTGATCGATCC 1917
Query 1918 ACGATTATCTCCAACGATGATAAGCTGAGAATGATCAACCTTAACGTCCTGAGACGTGCC 1977
||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||
Sbjct 1918 ACGGTTATCTCCAACGATGATAATCTGAGAATGCTCAACGTTAACGTCCTGAGACGAGCC 1977
Query 1978 CCATGCTCTGTTGCAATCTTCATCTATCGCAAGCCCATCGTCGAATCTCATATGATTAAT 2037
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 1978 CCATGCTCTGTTGGAATCTTCGTCTATCGCAAGCCCATCGTTGAATCTCATATGGCTAAG 2037
Query 2038 TCCCACAGCAAGATATGTTTGATTTTTAACGGTGGAAAAGACGATACAGAAGCTTTGGCG 2097
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2038 TCCCACAGCAAGATATGTTTGATTTTTAACGGTGGAAAAGACGATAGAGAAGCTTTGGCG 2097
Query 2098 ATAACAAATCGAATGAGACTGACAGACAAACGAACAAGGCTAACGATCATAAGATTCATT 2157
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2098 ATAACAAATCGAATGAGACTGACAGAAAAACGAACAAGGCTAACGATCATAAGATTCATT 2157
Query 2158 CCAAAATCTTCTGAAATGGATAACCATGAGTGGGAACAGCAGCAATCGATTAACCTAAAG 2217
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 2158 CCAAAATCTTCTGAAATGGATAACGATGAGTGGGAGCAACAGCAATCGATTAACCTAAAG 2217
Query 2218 GAGTCCGTGACTAACCTCATTGGGTCCAACATCAAAGAAAATGATGAGAAGGTGACATAT 2277
||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2218 GAGTCCGTGACTAGCATCGTTGGGTCCAACATCAAAGAAAATGATGCCAAGGTGACATAT 2277
Query 2278 ATCGATAAGGCGGTTTCTGATGGATCTGAGACCTCAAGAATCTTACGAGCAATGGCAAAT 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 ATCGATAAGGCGGTTTCTGATGGATCTGAGACCTCAAGAATCTTACGAGCAATGGCAAAT 2337
Query 2338 GATTATGACTTGTTTATCGTTGGAAGAGACAGCGGAATAGGTACTGAGGCAACTAGCGGA 2397
|||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||
Sbjct 2338 GATTATGACTTGTTTATCGTTGGAAGCGGCAGCGGAATAGGAACTGAGGCTACTAGCGGA 2397
Query 2398 ATTAGTGAATGGACAGAGTTCGATGAATTGGGACCCATTGGAGATTTATTAGCATCACAT 2457
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 2398 ATTAGTGAATGGACAGAGTTCAATGAATTGGGACCTATTGGAGATTTATTAGCATCACAT 2457
Query 2458 GAATATCCTTCGAGTGCATCAGTGTTGGTTGTACAAAAACAAGTGTACATTCATCATACA 2517
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2458 GAATATCCTTCAAGTGCATCAGTGTTGGTTGTTCAAAAACAAGTGTACATTCATCATACA 2517
Query 2518 AAAAGCCAAAAAAGAATATCTTTCTAAGAAATAATGTGAGATATGTTCAATGCTCAGCTG 2577
|||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2518 AAAAGCCAAAGGAGAAAATCTTTCTAAGAAATAATGCGAGATATGTTCAATGCTCAGCTT 2577
Query 2578 TTCAATGTTGTATTTCTCTACATCAA-AAAGATTAGTTT-AGGCTGCGTGAAGTTGTGGA 2635
|||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||| ||||
Sbjct 2578 TTCAATGTTGTATTTCTCTACATCAATAAACATTAGTTTTAGGCTGCTTGAAGTTATGGA 2637
Query 2636 GTAAAATAAATTCGAGTTTTTTCTGCATATGATGATA 2672
|||| | | ||||||||| ||||| |||||||||||
Sbjct 2638 GTAAT-TGA-TTCGAGTTTCTTCTGGATATGATGATA 2672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132691564235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5