BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470876 Length=2424 Score E Sequences producing significant alignments: (Bits) Value AT1G08150.1 | Symbols: ATCHX5, CHX5 | Cation/hydrogen exchanger... 3814 0.0 > AT1G08150.1 | Symbols: ATCHX5, CHX5 | Cation/hydrogen exchanger family protein | chr1:2556343-2559074 REVERSE LENGTH=2448 Length=2448 Score = 3814 bits (2065), Expect = 0.0 Identities = 2305/2423 (95%), Gaps = 8/2423 (0%) Strand=Plus/Plus Query 6 GGCATATAACGCAACCTTCTGGTCGGATTTCTCATATCATGGATATGGCTATAATGAAGA 65 |||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||| Sbjct 30 GGCATACAACGCAACCTTCTGGGGGGATTTCTCATATCATGGATATGGCTTTAGTGAAGA 89 Query 66 CGGGACCAAGTTCTGCGAACAAATACCCATGCTTGTGAACTCTTTTGGCGTGTGGGAGAA 125 |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 90 CGGGTCCAAGTTCTGCGAACAAATACCGATTCTTGTGAACTCTTTTGGCGTGTGGGAGAA 149 Query 126 GCTAGGTTTACCTGTTCTCGGGATGAAGATATGGGACTACAGTCTTCCCCTTCTCGAGAG 185 ||||| ||||||| | | |||||||||||||||||||||||||||||||| ||||||||| Sbjct 150 GCTAGATTTACCTATACGCGGGATGAAGATATGGGACTACAGTCTTCCCCATCTCGAGAG 209 Query 186 CGTAATCGTCCTAGTACTCTGTTTATGGCAGTTTTTCTATTTCTCCCTAAAGATGATAGG 245 ||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||| Sbjct 210 CGTAATCGTCCTAGTTCTCTGTTTATGGCAGTTTTTTTATTTATCCCTAAAGAAGATAGG 269 Query 246 CCTCCCTGTGCCAAAGATCACCTCCATGATGATTGCCGGGGCAACTTTGAGCCAGACGAG 305 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 270 CCTCCCTGTGCCAAAGATCACCTCCATGATGATTGCCGGGGCAGCTTTGAGCCAAACGAA 329 Query 306 TCTTTTGCCGAATGACTGGACGATCCAACACATTTTATTCCCGGATGATTA-TAGGCCAA 364 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 330 TCTTTTGCCGAATGACTGGACGATCCAGCACATTTTATTCCCGGATGA-TACTAGGCCAA 388 Query 365 AAGTCCCTGAGACGCTCGGTGGATTCGCTTTTGTGTTTTATTGGTTCCTCGAAGGTGTTA 424 |||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 389 AAGTGCCTGAGACGCTAGGTGGGTTCGCTTTTGTCTTTTATTGGTTCATCGAAGGTGTTA 448 Query 425 AAATGGATGTTGGGATGGTTAAGAAGACTGGTACGAAAGTGATTGTAACAGGAATTGTCA 484 ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || Sbjct 449 AAATGGATGTTGGGATGGTTAGGAAGACAGGTACGAAAGTGATTGTAACAGGAATTGCCA 508 Query 485 CTGTTCTTCTCCCCATTTTCGTGGCTAACATGGTGTTTGGTAAGCTAAGAGAGACCGGGG 544 ||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| Sbjct 509 CTGTTATTCTCCCCATTATCGCGGCCAACATGGTGTTTGGTAAGCTAAGAGAGACCGGGG 568 Query 545 GGAAATACTTGACAGGAATGGAGTACAGAACAATTTTATTCATGCAGAGCATCTCGGCGT 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 569 GGAAATACTTGACAGGAATGGAGTACAGAACAATTTTATTCATGCAGAGCATCTCGGCAT 628 Query 605 TCACGGGTATCTCAAGGCTATTAAGGGATCTCAAGATCAACCACTCAGAGTTTGGCAGGA 664 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 629 TCACGGGTATCTCAAGGCTATTAAGGGATCTCCGGATCAACCACTCAGAGTTCGGCAGGA 688 Query 665 TCGTGCTTTCCACCGCTATGGTGGCGGATGTAACGGGTTTTGCTGTTAATCTATTTGCCC 724 ||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 689 TCGTGATTTCGACCGCTATGGTGGCGGATGGAACGGGTTTTGGTGTTAATCTATTTGCCC 748 Query 725 TTGTGGCGTGGTTGGACTGGAGGGTTTCTGCGCTGCAAGGCGTAGGAATTATCGGATATG 784 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 TTGTGGCTTGGATGGACTGGAGGGTTTCTGCGCTGCAAGGCGTAGGAATTATCGGATATG 808 Query 785 TCATAGTCATGGTTTGGGTTGTGAGACCGGCGATGTTTTGGGTGATCAGAA-GGACACCA 843 ||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||||| Sbjct 809 TCATATTCATGGTTTGGGTTGTGAGACCGGCCATGTTTTGGGTGATCA-AACGGACACCA 867 Query 844 CAAGAGAGACCGGTGAAGGAATGCTTCATCTACATCATCCTCATTTTAGCCTTCGGTGGT 903 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 868 CAAGAGAGACCGGTGAAGGAATGCTTCATCTACATCATACTCATTTTAGCCTTCGGTGGT 927 Query 904 TACTATTTTTTGAAGGAAATTCACATGTTTCCGGCTGTTGGACCCTTCGTTTTGGGTTTG 963 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 928 TACTACTTTTTGAAGGAAATTCACATGTTTCCGGCTGTTGGACCCTTCCTTTTGGGTTTG 987 Query 964 TGTGTGCCTCACGGTCCTCCTCTAGGGTCTCTACTGATAGAAAAGTTTGAAAGCTTTAAC 1023 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 988 TGTGTGCCTCACGGTCCTCCTCTAGGGTCTCAACTGGTAGAAAAGTTTGAAAGCTTTAAC 1047 Query 1024 ACTGGAATCCTTTTGCCACTTTTCTTGTTCTTCTCAATGATGCAAATCGATGGACCTTGG 1083 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1048 ACTGGAATCCTTTTGCCACTTTTCTTGTTCTTCTCAATGCTGCAAATCGATGGACCTTGG 1107 Query 1084 ATAGCTAAGGAGATCGGTCAAATATGGCATTTTGAAGGTCAGTTGTATGAAGCCTTGACC 1143 ||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 1108 TTAGCTAACCAGATCGGTCAACTAAGGCATTTTGACGGTCAGTTGTATGAAGCCTTGACC 1167 Query 1144 ATCATCATCGTTGTCTTAGTCGCCAAGATTGTCTTCTCAACGATTCCTGCATTGCTAGCC 1203 ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1168 ATCATCATCGTTGTCTTTGTCGCCAAGATTATCTTCTCAATGATTCCTGCATTGCTAGCC 1227 Query 1204 AAAATGCCTCTAACCGACTCTTTCGTTATGGCACTCATCCTCAGCAACAAAGGAATTGTT 1263 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1228 AAAATGCCTCTGACCGACTCTTTCGTTATGGCACTCATCCTCAGCAACAAAGGAATTGTT 1287 Query 1264 GAGCTGTGTTATTTTATGTATGGCGTTGAAAGCAATGTTCTTCATGTGAAGTCCTTCTCG 1323 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1288 GAGCTGTGTTATTTTCTGTATGGAGTTGAAAGCAATGTTCTTCATGTGAAGTCCTTCACG 1347 Query 1324 ATAATGGCATTGATGATTTTAGTGAGCTCTACGATATCACCAGTGTTGATACATTACCTA 1383 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1348 ATTATGGCAACGATGATTTTAGTGAGCTCTACGATATCACCAGTGTTGATACATTACCTA 1407 Query 1384 TATGATTCGTCAAAACGATTCATTAGTTTCCAGAAGCGGAATCTAATGAGCCTGAAGCTT 1443 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1408 TATGATTCGTCAAAACGATTCATTAGTTTCCAGAAGCGGAATCTAATGAGCTTGAAGCTT 1467 Query 1444 GGATCAGAGCTGAAGTTTCTAGTGTGCATTCACAAAGCAGACCACATCTCAGGGATGATC 1503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1468 GGATCAGAGCTGAAGTTTCTAGTGTGCATTCACAAAGCAGACCACATCTCAGGGATGATC 1527 Query 1504 AACCTTCTAGGACAGTCTTTTCCTCTACATGAATCCACAATCTCTTGCTACGTGCTTCAC 1563 |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1528 AACCTTCTAGCACAGTCTTTTCCTCTACATGAATCCACAATAAGTTGCTACGTGATTCAC 1587 Query 1564 CTCGTCGAGCTTGTGGGTTTAGACAATCCAGTCTTCATCTCCCACCAGATGCAAAAGGCC 1623 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 1588 CTCGTCGAGCTTGTGGGTTTAGACAATCCAGTCTTTATCTCCCACCAAATGCAAAAAGCC 1647 Query 1624 GAGCCCGGAAACCGGTCTTATTCAAACAACGTCCTAATCGCTTTTGATAACTTCAAACAT 1683 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1648 GAACCTGGAAACCGGTCTTATTCAAACAACGTCCTAATCGCTTTTGATAACTTCAAACAT 1707 Query 1684 TACTGGAAATCGATATCGCTGGAATTGTTCACATCCATATCAAACCCTAAGTACATGCAC 1743 |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct 1708 TACTGGAAATCGATATCGCTGGAATTGTTCACATGCATCTCAAACCCTAGGTACATGCAT 1767 Query 1744 CAAGAGATTTACGCGCTCGCTCTCGACAAACAAGCTTC-TTTCATCATGCTCCCTTTCCA 1802 |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1768 CAAGAGATTTACTCGCTCGCTCTCGACAAACAAGCTTCTTTTC-TCATGCTCCCTTTCCA 1826 Query 1803 CATAATATGGTCCCTTGACCAGACAACGGTGGTCTCAGACGATGTCATGCGTAGGAACGC 1862 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1827 CATTATATGGTCCCTTGACCAGACAACGGTGGTCTCAGACGATGTCATGCGTAGGAACGC 1886 Query 1863 TAACTTGAATGTCTTGAGACAAGCACCTTGTTCCGTGGGGATATTTGTCCATCGCCAAAA 1922 |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 1887 TAACTTAAATGTCTTGAGACAAGCACCTTGCTCCGTGGGGATCTTTGTCCATCGTCAAAA 1946 Query 1923 CCTTTTCTCTGCGCAAAAGAGCAACCCGTCGTATCAGGTCTGCGCAATTTTTGTGGGCGG 1982 ||||| |||||||||||||||| ||||| | | |||||||||||||||| |||||||| Sbjct 1947 GCTTTTATCTGCGCAAAAGAGCAGTCCGTCTTTTGAGGTCTGCGCAATTTTCGTGGGCGG 2006 Query 1983 GAAAGACGACAGAGAAGCCTTGGCACTGGGGAGGCAAATGATGAGGAATCCGAATGTGAA 2042 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 2007 GAAAGACGACAGAGAAGCCTTGGCATTGGGAAGGCAAATGATGAGGAATCCGAATGTGAA 2066 Query 2043 CCTAACAGTGTTGAAGCTAGTCCCAGCGAAAATGGATGGGATGACCACTGGGTGGGATCA 2102 ||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| Sbjct 2067 CCTGACAGTGTTGAAGCTAATCCCAGCGAAAATGGATGGGATGACTACAGGGTGGGATCA 2126 Query 2103 GATGTTGGACTCGGCAGAGGTTAAGGAGGTTCTGAGGAACAATAACAATACTGCTGGACA 2162 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2127 GATGCTGGACTCGGCAGAGGTTAAGGAGGTTCTGAGGAACAATAACAATACTGTTGGACA 2186 Query 2163 ACATAGTTTTGTGGAATATGTAGAGGAGACAGTTAACGACGGTTCCGACACATCAACACT 2222 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2187 ACATAGTTTTGTGGAATACGTAGAGGAGACAGTTAACGACGGTTCCGACACATCAACACT 2246 Query 2223 CCTTCTCTCGATTGCTAATTCTTTTGATTTATTCGTGGTGGGGAGGAGCGCCGGAGTAGG 2282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2247 CCTTCTCTCGATTGCTAATTCTTTTGATTTATTCGTGGTGGGGAGGAGCGCCGGAGTAGG 2306 Query 2283 GACAGACGTGGTGAGTGCACTGAGTGAGTGGACGGAGTTTGATGAGTTAGGTGTGATTGG 2342 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2307 GACCGACGTGGTGAGTGCATTGAGTGAGTGGACGGAGTTTGATGAGTTAGGTGTGATTGG 2366 Query 2343 AGATTTGTTGGTGTCTTCA-GATTTCCCCCGTAGAGGTTCGGTGTTGGTGGTGCAACAAC 2401 |||| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| Sbjct 2367 AGATCTGTTGGTGTCT-CAAGATTTTCCCCGTAGAGGGTCGGTGTTGGTGGTGCAACAAC 2425 Query 2402 AACAGAATGTAGCTTGTAGATGA 2424 ||||||||||||||||||||||| Sbjct 2426 AACAGAATGTAGCTTGTAGATGA 2448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120380906910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5