BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470876
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08150.1 | Symbols: ATCHX5, CHX5 | Cation/hydrogen exchanger... 3814 0.0
> AT1G08150.1 | Symbols: ATCHX5, CHX5 | Cation/hydrogen exchanger
family protein | chr1:2556343-2559074 REVERSE LENGTH=2448
Length=2448
Score = 3814 bits (2065), Expect = 0.0
Identities = 2305/2423 (95%), Gaps = 8/2423 (0%)
Strand=Plus/Plus
Query 6 GGCATATAACGCAACCTTCTGGTCGGATTTCTCATATCATGGATATGGCTATAATGAAGA 65
|||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 30 GGCATACAACGCAACCTTCTGGGGGGATTTCTCATATCATGGATATGGCTTTAGTGAAGA 89
Query 66 CGGGACCAAGTTCTGCGAACAAATACCCATGCTTGTGAACTCTTTTGGCGTGTGGGAGAA 125
|||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 90 CGGGTCCAAGTTCTGCGAACAAATACCGATTCTTGTGAACTCTTTTGGCGTGTGGGAGAA 149
Query 126 GCTAGGTTTACCTGTTCTCGGGATGAAGATATGGGACTACAGTCTTCCCCTTCTCGAGAG 185
||||| ||||||| | | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 150 GCTAGATTTACCTATACGCGGGATGAAGATATGGGACTACAGTCTTCCCCATCTCGAGAG 209
Query 186 CGTAATCGTCCTAGTACTCTGTTTATGGCAGTTTTTCTATTTCTCCCTAAAGATGATAGG 245
||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 210 CGTAATCGTCCTAGTTCTCTGTTTATGGCAGTTTTTTTATTTATCCCTAAAGAAGATAGG 269
Query 246 CCTCCCTGTGCCAAAGATCACCTCCATGATGATTGCCGGGGCAACTTTGAGCCAGACGAG 305
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 270 CCTCCCTGTGCCAAAGATCACCTCCATGATGATTGCCGGGGCAGCTTTGAGCCAAACGAA 329
Query 306 TCTTTTGCCGAATGACTGGACGATCCAACACATTTTATTCCCGGATGATTA-TAGGCCAA 364
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 330 TCTTTTGCCGAATGACTGGACGATCCAGCACATTTTATTCCCGGATGA-TACTAGGCCAA 388
Query 365 AAGTCCCTGAGACGCTCGGTGGATTCGCTTTTGTGTTTTATTGGTTCCTCGAAGGTGTTA 424
|||| ||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 389 AAGTGCCTGAGACGCTAGGTGGGTTCGCTTTTGTCTTTTATTGGTTCATCGAAGGTGTTA 448
Query 425 AAATGGATGTTGGGATGGTTAAGAAGACTGGTACGAAAGTGATTGTAACAGGAATTGTCA 484
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 449 AAATGGATGTTGGGATGGTTAGGAAGACAGGTACGAAAGTGATTGTAACAGGAATTGCCA 508
Query 485 CTGTTCTTCTCCCCATTTTCGTGGCTAACATGGTGTTTGGTAAGCTAAGAGAGACCGGGG 544
||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 509 CTGTTATTCTCCCCATTATCGCGGCCAACATGGTGTTTGGTAAGCTAAGAGAGACCGGGG 568
Query 545 GGAAATACTTGACAGGAATGGAGTACAGAACAATTTTATTCATGCAGAGCATCTCGGCGT 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 569 GGAAATACTTGACAGGAATGGAGTACAGAACAATTTTATTCATGCAGAGCATCTCGGCAT 628
Query 605 TCACGGGTATCTCAAGGCTATTAAGGGATCTCAAGATCAACCACTCAGAGTTTGGCAGGA 664
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 629 TCACGGGTATCTCAAGGCTATTAAGGGATCTCCGGATCAACCACTCAGAGTTCGGCAGGA 688
Query 665 TCGTGCTTTCCACCGCTATGGTGGCGGATGTAACGGGTTTTGCTGTTAATCTATTTGCCC 724
||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 689 TCGTGATTTCGACCGCTATGGTGGCGGATGGAACGGGTTTTGGTGTTAATCTATTTGCCC 748
Query 725 TTGTGGCGTGGTTGGACTGGAGGGTTTCTGCGCTGCAAGGCGTAGGAATTATCGGATATG 784
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TTGTGGCTTGGATGGACTGGAGGGTTTCTGCGCTGCAAGGCGTAGGAATTATCGGATATG 808
Query 785 TCATAGTCATGGTTTGGGTTGTGAGACCGGCGATGTTTTGGGTGATCAGAA-GGACACCA 843
||||| ||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 809 TCATATTCATGGTTTGGGTTGTGAGACCGGCCATGTTTTGGGTGATCA-AACGGACACCA 867
Query 844 CAAGAGAGACCGGTGAAGGAATGCTTCATCTACATCATCCTCATTTTAGCCTTCGGTGGT 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 868 CAAGAGAGACCGGTGAAGGAATGCTTCATCTACATCATACTCATTTTAGCCTTCGGTGGT 927
Query 904 TACTATTTTTTGAAGGAAATTCACATGTTTCCGGCTGTTGGACCCTTCGTTTTGGGTTTG 963
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 928 TACTACTTTTTGAAGGAAATTCACATGTTTCCGGCTGTTGGACCCTTCCTTTTGGGTTTG 987
Query 964 TGTGTGCCTCACGGTCCTCCTCTAGGGTCTCTACTGATAGAAAAGTTTGAAAGCTTTAAC 1023
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 988 TGTGTGCCTCACGGTCCTCCTCTAGGGTCTCAACTGGTAGAAAAGTTTGAAAGCTTTAAC 1047
Query 1024 ACTGGAATCCTTTTGCCACTTTTCTTGTTCTTCTCAATGATGCAAATCGATGGACCTTGG 1083
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1048 ACTGGAATCCTTTTGCCACTTTTCTTGTTCTTCTCAATGCTGCAAATCGATGGACCTTGG 1107
Query 1084 ATAGCTAAGGAGATCGGTCAAATATGGCATTTTGAAGGTCAGTTGTATGAAGCCTTGACC 1143
||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 1108 TTAGCTAACCAGATCGGTCAACTAAGGCATTTTGACGGTCAGTTGTATGAAGCCTTGACC 1167
Query 1144 ATCATCATCGTTGTCTTAGTCGCCAAGATTGTCTTCTCAACGATTCCTGCATTGCTAGCC 1203
||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1168 ATCATCATCGTTGTCTTTGTCGCCAAGATTATCTTCTCAATGATTCCTGCATTGCTAGCC 1227
Query 1204 AAAATGCCTCTAACCGACTCTTTCGTTATGGCACTCATCCTCAGCAACAAAGGAATTGTT 1263
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 AAAATGCCTCTGACCGACTCTTTCGTTATGGCACTCATCCTCAGCAACAAAGGAATTGTT 1287
Query 1264 GAGCTGTGTTATTTTATGTATGGCGTTGAAAGCAATGTTCTTCATGTGAAGTCCTTCTCG 1323
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1288 GAGCTGTGTTATTTTCTGTATGGAGTTGAAAGCAATGTTCTTCATGTGAAGTCCTTCACG 1347
Query 1324 ATAATGGCATTGATGATTTTAGTGAGCTCTACGATATCACCAGTGTTGATACATTACCTA 1383
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 ATTATGGCAACGATGATTTTAGTGAGCTCTACGATATCACCAGTGTTGATACATTACCTA 1407
Query 1384 TATGATTCGTCAAAACGATTCATTAGTTTCCAGAAGCGGAATCTAATGAGCCTGAAGCTT 1443
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1408 TATGATTCGTCAAAACGATTCATTAGTTTCCAGAAGCGGAATCTAATGAGCTTGAAGCTT 1467
Query 1444 GGATCAGAGCTGAAGTTTCTAGTGTGCATTCACAAAGCAGACCACATCTCAGGGATGATC 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 GGATCAGAGCTGAAGTTTCTAGTGTGCATTCACAAAGCAGACCACATCTCAGGGATGATC 1527
Query 1504 AACCTTCTAGGACAGTCTTTTCCTCTACATGAATCCACAATCTCTTGCTACGTGCTTCAC 1563
|||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1528 AACCTTCTAGCACAGTCTTTTCCTCTACATGAATCCACAATAAGTTGCTACGTGATTCAC 1587
Query 1564 CTCGTCGAGCTTGTGGGTTTAGACAATCCAGTCTTCATCTCCCACCAGATGCAAAAGGCC 1623
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1588 CTCGTCGAGCTTGTGGGTTTAGACAATCCAGTCTTTATCTCCCACCAAATGCAAAAAGCC 1647
Query 1624 GAGCCCGGAAACCGGTCTTATTCAAACAACGTCCTAATCGCTTTTGATAACTTCAAACAT 1683
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GAACCTGGAAACCGGTCTTATTCAAACAACGTCCTAATCGCTTTTGATAACTTCAAACAT 1707
Query 1684 TACTGGAAATCGATATCGCTGGAATTGTTCACATCCATATCAAACCCTAAGTACATGCAC 1743
|||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 1708 TACTGGAAATCGATATCGCTGGAATTGTTCACATGCATCTCAAACCCTAGGTACATGCAT 1767
Query 1744 CAAGAGATTTACGCGCTCGCTCTCGACAAACAAGCTTC-TTTCATCATGCTCCCTTTCCA 1802
|||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1768 CAAGAGATTTACTCGCTCGCTCTCGACAAACAAGCTTCTTTTC-TCATGCTCCCTTTCCA 1826
Query 1803 CATAATATGGTCCCTTGACCAGACAACGGTGGTCTCAGACGATGTCATGCGTAGGAACGC 1862
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 CATTATATGGTCCCTTGACCAGACAACGGTGGTCTCAGACGATGTCATGCGTAGGAACGC 1886
Query 1863 TAACTTGAATGTCTTGAGACAAGCACCTTGTTCCGTGGGGATATTTGTCCATCGCCAAAA 1922
|||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1887 TAACTTAAATGTCTTGAGACAAGCACCTTGCTCCGTGGGGATCTTTGTCCATCGTCAAAA 1946
Query 1923 CCTTTTCTCTGCGCAAAAGAGCAACCCGTCGTATCAGGTCTGCGCAATTTTTGTGGGCGG 1982
||||| |||||||||||||||| ||||| | | |||||||||||||||| ||||||||
Sbjct 1947 GCTTTTATCTGCGCAAAAGAGCAGTCCGTCTTTTGAGGTCTGCGCAATTTTCGTGGGCGG 2006
Query 1983 GAAAGACGACAGAGAAGCCTTGGCACTGGGGAGGCAAATGATGAGGAATCCGAATGTGAA 2042
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2007 GAAAGACGACAGAGAAGCCTTGGCATTGGGAAGGCAAATGATGAGGAATCCGAATGTGAA 2066
Query 2043 CCTAACAGTGTTGAAGCTAGTCCCAGCGAAAATGGATGGGATGACCACTGGGTGGGATCA 2102
||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 2067 CCTGACAGTGTTGAAGCTAATCCCAGCGAAAATGGATGGGATGACTACAGGGTGGGATCA 2126
Query 2103 GATGTTGGACTCGGCAGAGGTTAAGGAGGTTCTGAGGAACAATAACAATACTGCTGGACA 2162
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2127 GATGCTGGACTCGGCAGAGGTTAAGGAGGTTCTGAGGAACAATAACAATACTGTTGGACA 2186
Query 2163 ACATAGTTTTGTGGAATATGTAGAGGAGACAGTTAACGACGGTTCCGACACATCAACACT 2222
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 ACATAGTTTTGTGGAATACGTAGAGGAGACAGTTAACGACGGTTCCGACACATCAACACT 2246
Query 2223 CCTTCTCTCGATTGCTAATTCTTTTGATTTATTCGTGGTGGGGAGGAGCGCCGGAGTAGG 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247 CCTTCTCTCGATTGCTAATTCTTTTGATTTATTCGTGGTGGGGAGGAGCGCCGGAGTAGG 2306
Query 2283 GACAGACGTGGTGAGTGCACTGAGTGAGTGGACGGAGTTTGATGAGTTAGGTGTGATTGG 2342
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2307 GACCGACGTGGTGAGTGCATTGAGTGAGTGGACGGAGTTTGATGAGTTAGGTGTGATTGG 2366
Query 2343 AGATTTGTTGGTGTCTTCA-GATTTCCCCCGTAGAGGTTCGGTGTTGGTGGTGCAACAAC 2401
|||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2367 AGATCTGTTGGTGTCT-CAAGATTTTCCCCGTAGAGGGTCGGTGTTGGTGGTGCAACAAC 2425
Query 2402 AACAGAATGTAGCTTGTAGATGA 2424
|||||||||||||||||||||||
Sbjct 2426 AACAGAATGTAGCTTGTAGATGA 2448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120380906910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5