BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470877
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08160.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1271 0.0
> AT1G08160.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:2559487-2560403
REVERSE LENGTH=917
Length=917
Score = 1271 bits (688), Expect = 0.0
Identities = 798/848 (94%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 1 AATCTTTGCTCTCTATCCTTTCCAAGAAATTAACTAGAAGTCCATCAAAATCTTCTCTGA 60
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 6 AATCTTTGCTCTCTATCCTTTCCAAGCAATTAACT-GAAGTCCATCAAAACCTTCTCTGA 64
Query 61 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGC-A--GCAA- 116
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 65 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGCAACTGCAAC 124
Query 117 -CC--TCG--A-C-C--G--CAACCCCTTCCGGGCAGGCGTATGAACCCCGTCCTATGCA 165
|| ||| | | | | |||||||| |||||||||||||||||||||||||||||||
Sbjct 125 CCCAATCGCAACCTCGAGCACAACCCCTGCCGGGCAGGCGTATGAACCCCGTCCTATGCA 184
Query 166 TCATCGTTGCCCTCGTCCTCTTGGGACTACTTGTGGGTCTCGCCATATTAATCACATACC 225
||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 185 TCATCGTCGCCCTCGTCCTCTTGGGACTCCTCGTGGGTCTCGCCATATTGATCACATACC 244
Query 226 TCACACTTAGGCCAAAACGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGATTTTG 285
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 245 TCACACTCAGGCCAAAGCGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGAGTTTG 304
Query 286 CTATAGGCAACAATGACGATCACATTACCGCAAAATTCAGCTATGTGATCAAATCATACA 345
||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 305 CTATAGGCAACAATGACGATCACATCAACGCAAAATTCAGCTACGTGATCAAATCATACA 364
Query 346 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 424
Query 406 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 484
Query 466 GGATTGAGACGCAGCTTGTGTCCAAGAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 525
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 485 GGATTGAGACGCAGCTTGTGTCCCACAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 544
Query 526 TGAGGGCTGAAAAATCAAAAGGAACGATCGAAATGGAAGTGTATATAACAGCTAGAGTGA 585
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 545 TAAGGGCTGAAAAATCAAAAGGGACGATCGAAATGGAAGTGTATATAACGGCTAGAGTGA 604
Query 586 GCTACAAGACGTGGATTTTCTGGTCGAGGAGACGTACTTTGAAGGCTGTGTGTACGCCTG 645
|||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
Sbjct 605 GCTACAAGACGTGGATTTTCCGGTCGAGAAGACGTACGTTGAAGGCTGTGTGTACGCCGG 664
Query 646 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTCTTATGCAAAACTC 705
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 665 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTGTTATGCAAAACTC 724
Query 706 GTCTTTAGTTTGAATTATTATTATCTTGTATTGGTTTCATTTGTGTGCAAAATTTGCTAT 765
||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 725 GTCTTTAGTTTGATTTATCCTCATCTTGAATTGGTTTCATTTGTGTGCAAAATTTGCTAT 784
Query 766 ATGTGCCCTTGATTGATtgtgtgtgtgtttttc-ttttctaaatttc-tgctttggtttt 823
||||| | ||||||||||||||||||||||||| |||| |||||||| | ||||||||||
Sbjct 785 ATGTGACATTGATTGATTGTGTGTGTGTTTTTCCTTTT-TAAATTTCCT-CTTTGGTTTT 842
Query 824 gttctttt 831
||||||||
Sbjct 843 GTTCTTTT 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5