BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470878
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08170.1 | Symbols: | Histone superfamily protein | chr1:25... 623 6e-178
> AT1G08170.1 | Symbols: | Histone superfamily protein | chr1:2562941-2563672
REVERSE LENGTH=732
Length=732
Score = 623 bits (337), Expect = 6e-178
Identities = 411/445 (92%), Gaps = 11/445 (2%)
Strand=Plus/Plus
Query 181 GAGATTCCGGTGGAGGTTCGAGATGAACAGTCACCTCAGCCACCGGAAACTCCCGCTTCC 240
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 289 GAGACTCCGGTGGAGGTTCGAGATGAACCTTCACCTCAGCCACCGGAAACTCCCGCTTCC 348
Query 241 AAGAGTGAAGGCACTTTGaaaaaaaCAGATACGGTTGagaagaag-a--ag---aagaa- 293
|||||||||||||||||||| |||||||||| ||||||||||||| | || |||||
Sbjct 349 AAGAGTGAAGGCACTTTGAAGAAAACAGATAAGGTTGAGAAGAAGCAGGAGAATAAGAAG 408
Query 294 aa-aa-aagaagaagaagCGAGACGATTTGGCAGGAGATGAGTATAGGAGATATGTGTAT 351
|| || || ||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 409 AAGAAGAAAAAGAAGAAGAGAGACGATTTGGCGGGAGATGAGTATAGGAGATATGTGTAT 468
Query 352 AAAGTGATGAAGCAAGTGCATCCGGATTTAGGGATAACGTCAAAGGCGATGACGGTAGTG 411
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 469 AAGGTGATGAAGCAAGTGCATCCGGATTTAGGTATAACGTCGAAGGCGATGACGGTGGTG 528
Query 412 AACATGTTCATGGGAGATATGTTCGAGAGAATAGCGCAGGAGGTGGCGAGGTTAAGTGAT 471
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 529 AACATGTTCATGGGAGATATGTTCGAGAGGATAGCGCAGGAGGCAGCGAGGTTAAGCGAT 588
Query 472 TATACGAAGCGGAGGATGTTGTCGTCGAGGGAGATCGAAGCAGCGGTGAGGTTGGTTCTC 531
||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 589 TATACAAAGCGGAGGACGTTGTCTTCGAGGGAGATCGAAGCAGCGGTTAGGTTGGTTCTG 648
Query 532 CCTGGTGAACTTAGCCGCCACGCCGTCGCTGAAGGCTCTAAAGCTGTTAGTAACTAT-GT 590
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 649 CCTGGTGAACTTAGCCGCCACGCTGTCGCTGAAGGCTCTAAAGCTGTTAGTAACT-TCGT 707
Query 591 TGGTTATGGTAGTAGGAAACGTTAG 615
|||||||| ||||||||||||||||
Sbjct 708 TGGTTATGATAGTAGGAAACGTTAG 732
Score = 329 bits (178), Expect = 2e-89
Identities = 202/214 (94%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCCGAGAAAACCGAAGGTGGTTTCCGTGACGAAGAAGAAGAAAGTAGTGGAAGAG 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCCGAGAAAACCAAAGGTTGTTTCCGTGACGAAGAAGAAGAAAGTAGTGGAAGAG 60
Query 61 ACAATCAAAGTAACCGTCACGGAAGGAGAAGATCCGTGTGTGACCACCGAGACAGCAAAC 120
||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |||
Sbjct 61 ACAATCAAAGTAACCGTCACGGAAGAAGGAGATCCGTGTGTGATCACCGAGACAGCGAAC 120
Query 121 GATCAAGAGACGCAAGATCTCACTTTCTCTATTCCCGTCGGAGAAAACGTTACTACGGTT 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 GATCAAGAGACGCAAGATCTCACTTTCTCCATTCCCGTCGGAGAAAACGTTACTACCGTT 180
Query 181 GAGATTCCGGTGGAGGTTCGAGATGAACAGTCAC 214
|||||||| |||||||||| ||| |||| |||||
Sbjct 181 GAGATTCCAGTGGAGGTTCCAGACGAACGGTCAC 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5