BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470878 Length=615 Score E Sequences producing significant alignments: (Bits) Value AT1G08170.1 | Symbols: | Histone superfamily protein | chr1:25... 623 6e-178 > AT1G08170.1 | Symbols: | Histone superfamily protein | chr1:2562941-2563672 REVERSE LENGTH=732 Length=732 Score = 623 bits (337), Expect = 6e-178 Identities = 411/445 (92%), Gaps = 11/445 (2%) Strand=Plus/Plus Query 181 GAGATTCCGGTGGAGGTTCGAGATGAACAGTCACCTCAGCCACCGGAAACTCCCGCTTCC 240 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 289 GAGACTCCGGTGGAGGTTCGAGATGAACCTTCACCTCAGCCACCGGAAACTCCCGCTTCC 348 Query 241 AAGAGTGAAGGCACTTTGaaaaaaaCAGATACGGTTGagaagaag-a--ag---aagaa- 293 |||||||||||||||||||| |||||||||| ||||||||||||| | || ||||| Sbjct 349 AAGAGTGAAGGCACTTTGAAGAAAACAGATAAGGTTGAGAAGAAGCAGGAGAATAAGAAG 408 Query 294 aa-aa-aagaagaagaagCGAGACGATTTGGCAGGAGATGAGTATAGGAGATATGTGTAT 351 || || || ||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 409 AAGAAGAAAAAGAAGAAGAGAGACGATTTGGCGGGAGATGAGTATAGGAGATATGTGTAT 468 Query 352 AAAGTGATGAAGCAAGTGCATCCGGATTTAGGGATAACGTCAAAGGCGATGACGGTAGTG 411 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| Sbjct 469 AAGGTGATGAAGCAAGTGCATCCGGATTTAGGTATAACGTCGAAGGCGATGACGGTGGTG 528 Query 412 AACATGTTCATGGGAGATATGTTCGAGAGAATAGCGCAGGAGGTGGCGAGGTTAAGTGAT 471 ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 529 AACATGTTCATGGGAGATATGTTCGAGAGGATAGCGCAGGAGGCAGCGAGGTTAAGCGAT 588 Query 472 TATACGAAGCGGAGGATGTTGTCGTCGAGGGAGATCGAAGCAGCGGTGAGGTTGGTTCTC 531 ||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||| Sbjct 589 TATACAAAGCGGAGGACGTTGTCTTCGAGGGAGATCGAAGCAGCGGTTAGGTTGGTTCTG 648 Query 532 CCTGGTGAACTTAGCCGCCACGCCGTCGCTGAAGGCTCTAAAGCTGTTAGTAACTAT-GT 590 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || Sbjct 649 CCTGGTGAACTTAGCCGCCACGCTGTCGCTGAAGGCTCTAAAGCTGTTAGTAACT-TCGT 707 Query 591 TGGTTATGGTAGTAGGAAACGTTAG 615 |||||||| |||||||||||||||| Sbjct 708 TGGTTATGATAGTAGGAAACGTTAG 732 Score = 329 bits (178), Expect = 2e-89 Identities = 202/214 (94%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 1 ATGGCGCCGAGAAAACCGAAGGTGGTTTCCGTGACGAAGAAGAAGAAAGTAGTGGAAGAG 60 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGCCGAGAAAACCAAAGGTTGTTTCCGTGACGAAGAAGAAGAAAGTAGTGGAAGAG 60 Query 61 ACAATCAAAGTAACCGTCACGGAAGGAGAAGATCCGTGTGTGACCACCGAGACAGCAAAC 120 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||| ||| Sbjct 61 ACAATCAAAGTAACCGTCACGGAAGAAGGAGATCCGTGTGTGATCACCGAGACAGCGAAC 120 Query 121 GATCAAGAGACGCAAGATCTCACTTTCTCTATTCCCGTCGGAGAAAACGTTACTACGGTT 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 121 GATCAAGAGACGCAAGATCTCACTTTCTCCATTCCCGTCGGAGAAAACGTTACTACCGTT 180 Query 181 GAGATTCCGGTGGAGGTTCGAGATGAACAGTCAC 214 |||||||| |||||||||| ||| |||| ||||| Sbjct 181 GAGATTCCAGTGGAGGTTCCAGACGAACGGTCAC 214 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29638146730 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5