BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470881
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08200.1 | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthas... 2427 0.0
AT2G27860.1 | Symbols: AXS1 | UDP-D-apiose/UDP-D-xylose synthas... 1424 0.0
> AT1G08200.1 | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase
2 | chr1:2573848-2576714 REVERSE LENGTH=1686
Length=1686
Score = 2427 bits (1314), Expect = 0.0
Identities = 1512/1601 (94%), Gaps = 39/1601 (2%)
Strand=Plus/Plus
Query 55 ACGCGTATTCACCGACACAA-CGAAAA-ATGGCTAACGGAGCCGGTCGATTGGATCTGGA 112
|||||| ||||||||||||| | |||| ||||| |||||||||| | |||||||||||||
Sbjct 79 ACGCGTGTTCACCGACACAATC-AAAATATGGCGAACGGAGCCGATAGATTGGATCTGGA 137
Query 113 CGGTAAACCGATTAAGCCGATTACGATATGCATGATCGGCGCCGGAGGTTTCATTGGCTC 172
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 138 CGGTAAACCGATTAAGCCGATGACGATATGCATGATCGGTGCCGGAGGTTTCATTGGCTC 197
Query 173 TCATCTCTGTGAGAAGCTAATGACGGAGACTCCTCACAAGGTGCTCGCGCTCGATGTCTA 232
|||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 198 TCATCTCTGTGAGAAGCTTATGACGGAGACTCCTCACAAGGTTCTTGCGCTTGATGTTTA 257
Query 233 CAATGATAAGATCAAGCACTTGCTTGAGCCTGATACCGTTCAATGGGCTGGTCGGATCCA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CAATGATAAGATCAAGCACTTGCTTGAGCCTGATACCGTTCAATGGGCTGGTCGGATCCA 317
Query 293 GTTTCATCGTATCAACATTAAGCATGATTCTAGACTCGAAGGACTGATCAAGATGGCAGA 352
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 318 GTTTCATCGTATCAACATTAAGCATGATTCTAGACTTGAAGGACTGATCAAGATGGCAGA 377
Query 353 TCTGACGATAAATCTAGCTGCGATCTGTACTCCAGCGGATTACAATACGCGTCCTCTTGA 412
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 378 TCTGACGATAAATCTAGCTGCGATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGA 437
Query 413 CACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGGTTAAGTACTGCTCTGAGAACAA 472
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 438 CACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGGTTAAATACTGCTCAGAGAACAA 497
Query 473 CAAGCGTCTGATTCACTTTTCCACTTGTGAAGTCTATGGAAAAACTATAGGAAGCTTTCT 532
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 498 CAAGCGTCTGATTCACTTTTCCACTTGTGAAGTGTATGGAAAAACTATAGGAAGCTTTCT 557
Query 533 TCCAAAGGATCATCCTCTGCGTCAGGATCCTGAATTTTATGTACTCAAAGAAGATATATC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TCCAAAGGATCATCCTCTGCGTCAGGATCCTGAATTTTATGTACTCAAAGAAGATATATC 617
Query 593 CCCTTGCATTTTTGGTTCTATTGAGAAGCAGAGGTGGTCATATGCATGTGCAAAGCAACT 652
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 618 CCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACT 677
Query 653 TATTGAGAGACTTGTTTATGCTGAGGGTGCTGAGAATGGGCTCGAGTTCACCATTGTAAG 712
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 678 TATTGAGAGACTTGTTTACGCTGAGGGTGCTGAGAATGGACTCGAGTTCACCATTGTAAG 737
Query 713 ACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGA 797
Query 773 GGGTGTCCCTCGGGTCCTAGCGTGCTTTAGTAACAACCTTCTGCGACGGGAGCCTCTCAA 832
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 798 GGGTGTCCCACGGGTTCTAGCGTGCTTTAGTAACAATCTTCTGCGACGGGAGCCTCTCAA 857
Query 833 GCTTGTGGATGGTGGAGAATCACAGAGAACCTTCATCTACATCAAAGATGCTATTGAAGC 892
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 858 GCTTGTGGATGGTGGAGAATCACAGAGAACCTTCATCTACATCAAAGATGCTATCGAAGC 917
Query 893 TGTCCTTTTGATGATTGAAAACCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAA 952
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 918 TGTCCTTTTGATGATCGAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAA 977
Query 953 CCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGGTCTACGCAAA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 978 CCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGGTCTACGCCAA 1037
Query 1013 AGTGAGTGGAGAGACAGCCATCGAGAGCCCAACGATCGATGTGAGCTCCAAAGAATTTTA 1072
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1038 AGTGAGTGGAGAGACAGCTATCGAGAGTCCAACGATCGACGTGAGCTCCAAAGAGTTTTA 1097
Query 1073 TGGAGAAGGTTATGATGACAGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 TGGAGAAGGTTATGATGACAGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCA 1157
Query 1133 ACTTGGATGGAACCCGAAGACTTCGCTTTGGGACTTGCTTGAGTCGACCTTAACATACCA 1192
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1158 ACTTGGATGGAACCCGAAGACGTCGCTTTGGGACTTGCTTGAATCGACCTTAACATACCA 1217
Query 1193 GCACACGACATATGCGGAAGCCATTAAGAAGGCCACTTCAAAACCAGTCGCATCTTAGAG 1252
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GCACACGACTTATGCGGAAGCCATTAAGAAGGCCACTTCAAAACCAGTCGCATCTTAGAG 1277
Query 1253 GTCGTCTCTCTT-ACAAACACCTCAAATCATGTGGTGGCTACGATTCCATTCTTT----- 1306
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 GTCGTCTCTCTTTACAAACACCTCAAATCATGTGGTGGCTACGATTCCATTCTTTCTTTT 1337
Query 1307 -AA--------TTCTCCCAACAGAAACCTTTTCTTCCCTTATGTTAGGCAATTTCTAAGC 1357
|| ||||||||||||||||||| ||||||||||| |||||| ||| |||| |
Sbjct 1338 TAAAAAAAAAATTCTCCCAACAGAAACCTTCTCTTCCCTTATTTTAGGCCATT-CTAAAC 1396
Query 1358 AAATGATATATCACGGTGGTTGATTCTAGTTTACGTTTTCCTTGTTATATAGTATTACTG 1417
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 AAATGATATATCATGGTGGTTGATTCTAGTTTACGTTTTCCTTGTTATATAGTATTACTG 1456
Query 1418 TTAATGTTT--G--TT-----G-----AAGCTTTATATCTTGTATTTGTCCGAAACTAAA 1463
||||||||| | || | |||||||||||||||||||||||||||||||||
Sbjct 1457 TTAATGTTTTTGAATTCCTTTGTTTTGAAGCTTTATATCTTGTATTTGTCCGAAACTAAA 1516
Query 1464 AAGGGAATGGTTTGTGCAAACTATAACATTGGGGCTTTCTTTATATGTTACATATATTTT 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1517 AAGGGAATGGTTTGTGCAAACTATAACATTGGGGCTTTCTTTATATGTTACATATCTTT- 1575
Query 1524 TGGCGGATTCCACACTTTACTTCTTCTATATCTGTCTAATTGGAATAAGCGAGTTCGTTT 1583
|||||||||||||||| |||||| ||||||| || ||| ||||| |||||| ||||
Sbjct 1576 -GGCGGATTCCACACTTCACTTCT---ATATCTGCCTGGTTGTAATAAACGAGTTAGTTT 1631
Query 1584 GGCTTTTGCTTGTGTTGCTG-GTTTTGTGAATATATACCTT 1623
|||||||||| ||||||||| ||| ||||||||||||||||
Sbjct 1632 GGCTTTTGCTCGTGTTGCTGTGTTATGTGAATATATACCTT 1672
> AT2G27860.1 | Symbols: AXS1 | UDP-D-apiose/UDP-D-xylose synthase
1 | chr2:11864393-11866907 REVERSE LENGTH=1525
Length=1525
Score = 1424 bits (771), Expect = 0.0
Identities = 1039/1170 (89%), Gaps = 12/1170 (1%)
Strand=Plus/Plus
Query 77 AAAAATGGCTAACGGAGCCGGTCGATTGGATCTGGACGGTAAACCGATTA-AGCCGATT- 134
||||||||| || ||||| | || ||||||| ||||| ||||||| || | ||| ||
Sbjct 61 AAAAATGGCGAATGGAGCTAATAGAGTGGATCTCGACGGGAAACCGA-TACAACCG-TTG 118
Query 135 ACGATATGCATGATCGGCGCCGGAGGTTTCATTGGCTCTCATCTCTGTGAGAAGCTAATG 194
|| ||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||
Sbjct 119 ACAATATGCATGATCGGCGCCGGAGGTTTCATCGGTTCACATCTCTGTGAAAAGCTCTTG 178
Query 195 ACGGAGACTCCTCACAAGGTGCTCGCGCTCGATGTCTACAATGATAAGATCAAGCACTTG 254
|| ||||| || || |||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 179 ACCGAGACGCCACATAAGGTGCTTGCGCTCGATGTTTACAACGATAAGATCAAACACTTG 238
Query 255 CTTGAGCCTGATACCGTTCAATGG-GCTGGTCGGATCCAGTTTCATCGTATCAACATTAA 313
|||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||
Sbjct 239 CTTGAGCCTGATACCGTTGAATGGAG-TGGTCGGATCCAGTTTCATCGTATCAATATTAA 297
Query 314 GCATGATTCTAGACTCGAAGGAC-TGATCAAGATGGCAGATCTGACGATAAATCTAGCTG 372
||||||||| ||||| ||||| | || | |||||||| ||||||| |||||||| ||||
Sbjct 298 GCATGATTCGAGACTTGAAGGTCTTG-TTAAGATGGCGGATCTGATTATAAATCTTGCTG 356
Query 373 CGATCTGTACTCCAGCGGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCA 432
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 357 CGATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACTATCTACAGCAATTTCA 416
Query 433 TTGATGCTCTCCCAGTGGTTAAGTACTGCTCTGAGAACAACAAGCGTCTGATTCACTTTT 492
||||||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||
Sbjct 417 TTGATGCGCTTCCAGTTGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTT 476
Query 493 CCACTTGTGAAGTCTATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGC 552
| || |||||||| ||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 477 CTACCTGTGAAGTTTATGGAAAAACCATTGGAAGCTTTCTTCCTAAGGATCATCCTCTGC 536
Query 553 GTCAGGATCCTGAATTT-TATGTACTCAAAGAAGATATATCCCCTTGCATTTTTGGTTCT 611
|| | ||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 537 GTGATGATCCTG-CTTTCTATGTTCTTAAAGAAGATATTTCCCCTTGCATATTTGGTTCA 595
Query 612 ATTGAGAAGCAGAGGTGGTCATATGCATGTGCAAAGCAACTTATTGAGAGACTTGTTTAT 671
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 596 ATTGAGAAGCAGAGGTGGTCATATGCGTGTGCAAAGCAACTGATTGAGAGACTTGTTTAC 655
Query 672 GCTGAGGGTGCTGAGAATGGGCTCGAGTTCACCATTGTAAGACCATTCAACTGGATTGGA 731
||||||||||||||||||||||| ||||||||||| ||| |||| || ||||||||||||
Sbjct 656 GCTGAGGGTGCTGAGAATGGGCTTGAGTTCACCATCGTACGACCTTTTAACTGGATTGGA 715
Query 732 CCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGAGGGTGTCCCTCGGGTCCTA 791
|||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 716 CCTAGGATGGATTTCATCCCCGGCATTGATGGTCCTAGCGAAGGTGTCCCACGTGTCCTT 775
Query 792 GCGTGCTTTAGTAACAACCTTCTGCGACGGGAGCCTCTCAAGCTTGTGGATGGTGGAGAA 851
|| |||||||||||||| ||||| || || ||||||||||||||||| ||||||||||||
Sbjct 776 GCCTGCTTTAGTAACAATCTTCTACGTCGTGAGCCTCTCAAGCTTGTAGATGGTGGAGAA 835
Query 852 TCACAGAGAACCTTCATCTACATCAAAGATGCTATTGAAGCTGTCCTTTTGATGATTGAA 911
||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 836 TCACAGAGAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTGAA 895
Query 912 AACCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACA 971
||||||||||| || |||||||| |||||||| ||||||||||| ||||| ||||| |||
Sbjct 896 AACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAACAACGAAGTTACA 955
Query 972 GTGAGACAACTTGCTGAAATGATGACTGAGGTCTACGCAAAAGTGAGTGGAGA-GACAGC 1030
|| ||||| || |||||||||||||| ||||| |||||||||||||||||||| | |||
Sbjct 956 GTAAGACAGCTCGCTGAAATGATGACCGAGGTTTACGCAAAAGTGAGTGGAGAAGG-AGC 1014
Query 1031 CATCGAGAGCCCAACGATCGATGTGAGCTCCAAAGAATTTTATGGAGAAGGTTATGATGA 1090
||| |||||||||||| | ||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 1015 CATTGAGAGCCCAACGGTTGATGTTAGCTCCAAAGAGTTTTACGGGGAAGGTTATGATGA 1074
Query 1091 CAGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCAACTTGGATGGAACCCGAA 1150
||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1075 CAGTGACAAGAGAATCCCAGACATGACCATCATTAACCGCCAACTCGGATGGAACCCGAA 1134
Query 1151 GACTTCGCTTTGGGACTTGCTTGAGTCGACCTTAACATACCAGCACACGACATATGCGGA 1210
|| ||||| ||||||||||| |||||||||||||| |||||||||| |||||| || ||
Sbjct 1135 AACATCGCTATGGGACTTGCTCGAGTCGACCTTAACCTACCAGCACAGGACATACGCTGA 1194
Query 1211 AGCCATTAAGAAGGCCACTTCAAAACCAGT 1240
||| | |||||||| || || ||||||||
Sbjct 1195 AGCTGTGAAGAAGGCAACATCCAAACCAGT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5