BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470882 Length=1645 Score E Sequences producing significant alignments: (Bits) Value AT1G08210.1 | Symbols: | Eukaryotic aspartyl protease family p... 2606 0.0 > AT1G08210.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr1:2577020-2580669 REVERSE LENGTH=1666 Length=1666 Score = 2606 bits (1411), Expect = 0.0 Identities = 1572/1649 (95%), Gaps = 14/1649 (1%) Strand=Plus/Plus Query 1 ATATTATCAGAACGTTTCAGTTGGCGGCTTTCTCTCTCTCTTTCCCCAGGAAGAGAAAGT 60 ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| Sbjct 18 ATATTATCAGAACGTTTCAATTGGCGGC-TT-TCTCTCTCTTTCCCCAGGAAGAGAAAGT 75 Query 61 TCGAACTCGAGAAATGGCGGTGGATTCTCCTGCTGGAGTTATCATCATCGCCACCGTGCT 120 |||||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||||| Sbjct 76 TCGAACTCCAGAAATGGCGGTGGATTCTCCCGCTGGAGTTATTATCATCGCCGCCGTGCT 135 Query 121 TTTACATGCTGTGACAACCTTGGTCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 180 ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 136 TTTACTTGCTGCGACAACCTTGGCCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 195 Query 181 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 255 Query 241 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 315 Query 301 CGATCCGTTTCTCGTTGGGCTTTACTACACAAAGGTTAAACTTGGGACACCCCCTAGAGA 360 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 316 CGATCCGTTTCTCGTCGGGCTTTACTACACAAAGGTTAAACTTGGGACACCACCAAGAGA 375 Query 361 ATTTAATGTGCAAATTGATACTGGAAGTGATGTTTTATGGGTTAGCTGCACTTCCTGCAA 420 ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 376 ATTTAATGTTCAAATTGACACTGGAAGTGATGTTTTGTGGGTTAGCTGCACTTCCTGCAA 435 Query 421 TGGCTGCCCCAAGACTAGTGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 480 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 436 TGGCTGCCCCAAGACTAGCGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 495 Query 481 ATCCTCGGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 540 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 ATCCTCAGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 555 Query 541 GTCGGGCTGTTCTCCCAACAATCTTTGTTCCTATTCGTTTAAGTATGGTGATGGAAGTGG 600 || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 556 ATCAGGCTGTTCTCCCAACAATCTCTGTTCCTATTCGTTTAAGTACGGTGATGGAAGTGG 615 Query 601 CACTTCTGGTTTCTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 660 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 616 CACTTCTGGTTACTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 675 Query 661 GGCTATAAATTCCTCTGCTCCCTTTGTCTTCGGGTGTAGCAATTTACAAACCGGTGATTT 720 ||||||||||||||||||||||||||| || |||||||||||||||||| | || ||||| Sbjct 676 GGCTATAAATTCCTCTGCTCCCTTTGTTTTTGGGTGTAGCAATTTACAATCTGGAGATTT 735 Query 721 ACAGAGACCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCTGT 780 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 736 ACAGAGGCCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCAGT 795 Query 781 AATTTCACAGCTTGCTGTGCAAGGACTTGCGCCACGAGTATTCTCGCACTGTCTGAAGGG 840 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 796 AATTTCTCAGCTTGCTGTGCAAGGACTCGCGCCACGAGTATTCTCGCATTGTCTGAAGGG 855 Query 841 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATTAAGAGGCCAGATACCGTGTA 900 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 856 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATCAAGAGGCCAGATACCGTCTA 915 Query 901 TACCCCTCTCGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 960 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 TACTCCTCTTGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 975 Query 961 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 976 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1035 Query 1021 AATTGATACGGGGACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1080 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1036 AATTGATACGGGAACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1095 Query 1081 AGCTATTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACTTATGAGAGTTACCAGTG 1140 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1096 AGCTGTTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACCTATGAGAGTTACCAATG 1155 Query 1141 CTTTGATATCACAGCTGGTGACGTTGATGTCTTTCCCGAAGTGAGTTTGAGCTTTGCTGG 1200 |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1156 CTTTGAAATCACAGCTGGTGACGTTGATGTCTTTCCCCAAGTTAGTTTGAGCTTTGCTGG 1215 Query 1201 TGGTGCATCAATGGTCTTAAGACCCCGTGCGTATCTTCAGATTTTTTCTAGTTCAGGAAG 1260 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1216 TGGTGCATCAATGGTCTTAGGACCCCGTGCATATCTTCAGATTTTTTCTAGTTCAGGAAG 1275 Query 1261 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCACATCGTCGCATAACAATTCTTGGCGA 1320 ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 1276 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCTCATCGTCGTATAACAATTCTTGGTGA 1335 Query 1321 TTTGGTTCTTAAAGACAAAGTTGTCGTCTACGATCTTGTTCGCCAGCGTATTGGATGGGC 1380 ||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| Sbjct 1336 TTTGGTTCTTAAAGACAAAGTGGTGGTCTACGATCTAGTTCGCCAACGTATTGGATGGGC 1395 Query 1381 AGAATACGACTGTTCTCTGGAGGTGAACGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1440 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1396 AGAATACGACTGTTCTCTGGAGGTGAATGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1455 Query 1441 CGTTATAAACACAGGACAATGGAGAGAGAGCGGTTCAGAGAGTTTCAATAGAAGTTATTA 1500 ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 1456 CGTTATAAACACAGGACAATGGAGAGAAAGCGGTTCGGAGAGTTTTAATAGAAGTTATTA 1515 Query 1501 TTACTTGTTACAACAACTAGTCTTCCTCCTCCATCTTTTTGCTCGCTT-TT-T-GTAGCT 1557 ||||||||||| | |||||||||| |||| ||||||||||| || || | |||||| Sbjct 1516 ---CTTGTTACAACTAGTAGTCTTCCTTGTCCACCTTTTTGCTCGTTTCTTGTAGTAGCT 1572 Query 1558 TCTAGCATTCACTCCACCACCTATTATGGTTGGACTTTTGTAAGCTTAT-T-ATTGTAAT 1615 | ||||||||||||||||| |||||||||||||||| |||||||||| | |||||||| Sbjct 1573 TTTAGCATTCACTCCACCA---ATTATGGTTGGACTTT-GTAAGCTTATATTATTGTAAT 1628 Query 1616 TTAATCATACTAATTAATTCTTACTTACC 1644 ||||||| ||||||||||||||||||||| Sbjct 1629 TTAATCACACTAATTAATTCTTACTTACC 1657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81274682355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5