BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470882
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08210.1 | Symbols: | Eukaryotic aspartyl protease family p... 2606 0.0
> AT1G08210.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:2577020-2580669 REVERSE LENGTH=1666
Length=1666
Score = 2606 bits (1411), Expect = 0.0
Identities = 1572/1649 (95%), Gaps = 14/1649 (1%)
Strand=Plus/Plus
Query 1 ATATTATCAGAACGTTTCAGTTGGCGGCTTTCTCTCTCTCTTTCCCCAGGAAGAGAAAGT 60
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 18 ATATTATCAGAACGTTTCAATTGGCGGC-TT-TCTCTCTCTTTCCCCAGGAAGAGAAAGT 75
Query 61 TCGAACTCGAGAAATGGCGGTGGATTCTCCTGCTGGAGTTATCATCATCGCCACCGTGCT 120
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 76 TCGAACTCCAGAAATGGCGGTGGATTCTCCCGCTGGAGTTATTATCATCGCCGCCGTGCT 135
Query 121 TTTACATGCTGTGACAACCTTGGTCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 180
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 136 TTTACTTGCTGCGACAACCTTGGCCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 195
Query 181 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 255
Query 241 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 315
Query 301 CGATCCGTTTCTCGTTGGGCTTTACTACACAAAGGTTAAACTTGGGACACCCCCTAGAGA 360
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 316 CGATCCGTTTCTCGTCGGGCTTTACTACACAAAGGTTAAACTTGGGACACCACCAAGAGA 375
Query 361 ATTTAATGTGCAAATTGATACTGGAAGTGATGTTTTATGGGTTAGCTGCACTTCCTGCAA 420
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 376 ATTTAATGTTCAAATTGACACTGGAAGTGATGTTTTGTGGGTTAGCTGCACTTCCTGCAA 435
Query 421 TGGCTGCCCCAAGACTAGTGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TGGCTGCCCCAAGACTAGCGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 495
Query 481 ATCCTCGGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ATCCTCAGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 555
Query 541 GTCGGGCTGTTCTCCCAACAATCTTTGTTCCTATTCGTTTAAGTATGGTGATGGAAGTGG 600
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 556 ATCAGGCTGTTCTCCCAACAATCTCTGTTCCTATTCGTTTAAGTACGGTGATGGAAGTGG 615
Query 601 CACTTCTGGTTTCTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CACTTCTGGTTACTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 675
Query 661 GGCTATAAATTCCTCTGCTCCCTTTGTCTTCGGGTGTAGCAATTTACAAACCGGTGATTT 720
||||||||||||||||||||||||||| || |||||||||||||||||| | || |||||
Sbjct 676 GGCTATAAATTCCTCTGCTCCCTTTGTTTTTGGGTGTAGCAATTTACAATCTGGAGATTT 735
Query 721 ACAGAGACCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCTGT 780
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 736 ACAGAGGCCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCAGT 795
Query 781 AATTTCACAGCTTGCTGTGCAAGGACTTGCGCCACGAGTATTCTCGCACTGTCTGAAGGG 840
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 796 AATTTCTCAGCTTGCTGTGCAAGGACTCGCGCCACGAGTATTCTCGCATTGTCTGAAGGG 855
Query 841 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATTAAGAGGCCAGATACCGTGTA 900
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 856 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATCAAGAGGCCAGATACCGTCTA 915
Query 901 TACCCCTCTCGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 960
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TACTCCTCTTGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 975
Query 961 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1035
Query 1021 AATTGATACGGGGACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1080
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AATTGATACGGGAACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1095
Query 1081 AGCTATTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACTTATGAGAGTTACCAGTG 1140
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1096 AGCTGTTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACCTATGAGAGTTACCAATG 1155
Query 1141 CTTTGATATCACAGCTGGTGACGTTGATGTCTTTCCCGAAGTGAGTTTGAGCTTTGCTGG 1200
|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1156 CTTTGAAATCACAGCTGGTGACGTTGATGTCTTTCCCCAAGTTAGTTTGAGCTTTGCTGG 1215
Query 1201 TGGTGCATCAATGGTCTTAAGACCCCGTGCGTATCTTCAGATTTTTTCTAGTTCAGGAAG 1260
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1216 TGGTGCATCAATGGTCTTAGGACCCCGTGCATATCTTCAGATTTTTTCTAGTTCAGGAAG 1275
Query 1261 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCACATCGTCGCATAACAATTCTTGGCGA 1320
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1276 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCTCATCGTCGTATAACAATTCTTGGTGA 1335
Query 1321 TTTGGTTCTTAAAGACAAAGTTGTCGTCTACGATCTTGTTCGCCAGCGTATTGGATGGGC 1380
||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 1336 TTTGGTTCTTAAAGACAAAGTGGTGGTCTACGATCTAGTTCGCCAACGTATTGGATGGGC 1395
Query 1381 AGAATACGACTGTTCTCTGGAGGTGAACGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1440
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1396 AGAATACGACTGTTCTCTGGAGGTGAATGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1455
Query 1441 CGTTATAAACACAGGACAATGGAGAGAGAGCGGTTCAGAGAGTTTCAATAGAAGTTATTA 1500
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1456 CGTTATAAACACAGGACAATGGAGAGAAAGCGGTTCGGAGAGTTTTAATAGAAGTTATTA 1515
Query 1501 TTACTTGTTACAACAACTAGTCTTCCTCCTCCATCTTTTTGCTCGCTT-TT-T-GTAGCT 1557
||||||||||| | |||||||||| |||| ||||||||||| || || | ||||||
Sbjct 1516 ---CTTGTTACAACTAGTAGTCTTCCTTGTCCACCTTTTTGCTCGTTTCTTGTAGTAGCT 1572
Query 1558 TCTAGCATTCACTCCACCACCTATTATGGTTGGACTTTTGTAAGCTTAT-T-ATTGTAAT 1615
| ||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||
Sbjct 1573 TTTAGCATTCACTCCACCA---ATTATGGTTGGACTTT-GTAAGCTTATATTATTGTAAT 1628
Query 1616 TTAATCATACTAATTAATTCTTACTTACC 1644
||||||| |||||||||||||||||||||
Sbjct 1629 TTAATCACACTAATTAATTCTTACTTACC 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81274682355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5