BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470883
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08220.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1500 0.0
> AT1G08220.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: mitochondrial proton-transporting ATP synthase
complex assembly; LOCATED IN: mitochondrial inner membrane;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING:
7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly
factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast
hits to 168 proteins in 86 species: Archae - 6; Bacteria
- 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other
Eukaryotes - 23 (source: NCBI BLink). | chr1:2581022-2583323
REVERSE LENGTH=1165
Length=1165
Score = 1500 bits (812), Expect = 0.0
Identities = 934/992 (94%), Gaps = 12/992 (1%)
Strand=Plus/Plus
Query 1 CATAACCAACCAAATAGGGTTTAAGCTCTTCTAAAATGGCGACGACGTTGAATCGATTCC 60
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1 CATAACCAAACAAATAGGGTTTAAGCTCTACTAAAATGGCGACGACGTTGAATCGAATCC 60
Query 61 TGAAGCACAGGTCAGTCTCTGC-CATCAACAAGCATCATCAAGGACTCTTCT-CCTCCAC 118
||||||| || ||||||||||| | ||||||||||||||||||||||||||| ||| |||
Sbjct 61 TGAAGCATAGATCAGTCTCTGCTC-TCAACAAGCATCATCAAGGACTCTTCTCCCT-CAC 118
Query 119 TCGCTACGAGAATCATGACTCTCTCACTTCGAAAATGCCGGCTCTTCGATCACCCACCCG 178
||| ||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||
Sbjct 119 TCGATACGAGAATCATGACTCTCTCCCTTCTCAAATGCCAGCTCTTCGATCAACCACCCG 178
Query 179 CTCTTTCCTCGATTTTTATCAGTTCGGGAACAAGAAAGCGATTGAAGATGAGCGTACTAG 238
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 179 TTCTTTCCTCGATTTTTATAAGTTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAG 238
Query 239 ACTTAATGATGAGATGAATCGGGGATACTTTGCTGATATGAAAGAATTCAAGGATCATGG 298
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 239 ACTTAATGATGAGATGAATCGGGGTTACTTTGCTGATATGAAAGAATTCAAGGAACATGG 298
Query 299 TGGTAAGATCGCAGCTGCAAATAAGA-TATTAATTCCTGCTGCATCAGCCATCAAATTTC 357
|||||||||||||||||||||||||| || |||||||||| || ||||||||||||||||
Sbjct 299 TGGTAAGATCGCAGCTGCAAATAAGACTA-TAATTCCTGCCGCTTCAGCCATCAAATTTC 357
Query 358 CGGTATTAGCAGTGACTTTCTCTAATGGAAAAAGCCTAAAGTTGCCTATTTCTCCCAACA 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 CGGTATTAGCAGTGACTTTCTCTAATGGAAAAAGCCTAAAGTTGCCTATTGCTCCCAACA 417
Query 418 GCAATGAGGTTGACACAGATAGTTTGGCTGTTCCTAAAGTATCATTGGTTTGTCTGTCTT 477
||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct 418 GCAATGAGGTTGACACAGAGAGTTTGGTTGTTCCTAAAGTATCATTGGTGTGTCTGTCTT 477
Query 478 TCCGAGCAAGCTCTCAGGAAATGATAAGCTCGTGGAGCAAACCATTTCTTGAAACATTTG 537
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 478 TCCGAGCAAGCTCTCAGGAAATGATCAGCTCGTGGAGCAAACCATTTCTTGAATCATTTG 537
Query 538 GCAACAGGAAAGATCTTCAGCTGTTTGAGGTTTCATTTATAGACAAATGGCTGCTGGGCT 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCAACAGGAAAGATCTTCAGTTGTTTGAGGTTTCATTTATAGACAAATGGCTGCTGGGCT 597
Query 598 TGGCCCCCATAAGAAAACTACTTCTCCGGGTCTTGCAAAAACCAAACAATAACGAGAACA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 TGGCCCCCATAAGAAAACTACTTCTCCGGGTCTTGCAAAAACCAAACAATAACGAGAATA 657
Query 658 GTGTCCTCCAGAGGCAGGCTGT-TTACGCATTTGGGGACCATTACAACTTCCGTAAACAA 716
|||||||||||||||||| || |||||||||||| ||||||||| ||||||||||| ||
Sbjct 658 GTGTCCTCCAGAGGCAGG-TGGGTTACGCATTTGGAGACCATTACTACTTCCGTAAAGAA 716
Query 717 ATTAAAGTTCTGAACCTTCTCACTGGGTATATTCTCTTACTTGACAAATCCGGGAGGATA 776
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 717 ATTAAAGTTCTGAACCTTCTCACCGGGTATATTCTCTTACTTGACAAATCCGGGAGAATA 776
Query 777 AGATGGCAAGGTTTTGGAACAGCAACTCCAGAGGAAGTATCTCAACTTCTCTCTTGCACC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGATGGCAAGGTTTTGGAACAGCAACTCCAGAGGAAGTATCTCAACTTCTCTCTTGCACC 836
Query 837 TCACTTCTCTTGGAAGATCAGTGAGAGATCGCTGCCTAAACTGGAGACCGTCTCAAAAGA 896
|||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
Sbjct 837 TCACTTCTCTTGGAAGATCAATGAGAGATCGCTCCCTGAACTGGAGACCGTCTCAAAACA 896
Query 897 CAAGTGCTCCTCCTTGACTCTTATGAAGGAT-TTCGAAGAAGA-AGACAATAAAGTATCT 954
|||||||||||||||| |||||| | ||||| || | ||||| | | ||||||||||||
Sbjct 897 CAAGTGCTCCTCCTTGGCTCTTACGGAGGATGTT-GTCGAAGACA-ATAATAAAGTATCT 954
Query 955 CTTATCTTTCCGTTTTGTAGTTTGATTCGATT 986
||||||||||||||||| ||||||||| ||||
Sbjct 955 CTTATCTTTCCGTTTTGCAGTTTGATTGGATT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5