BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470889
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08280.1 | Symbols: | Glycosyltransferase family 29 (sialyl... 1766 0.0
> AT1G08280.1 | Symbols: | Glycosyltransferase family 29 (sialyltransferase)
family protein | chr1:2608408-2609853 FORWARD
LENGTH=1446
Length=1446
Score = 1766 bits (956), Expect = 0.0
Identities = 1132/1214 (93%), Gaps = 24/1214 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGATCCGTTAGACCTCTCTTCAGTGCTCTCCTCTTCGCCTTCTTCGCCGCCACA 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGAAACGATCCGTTAGACCTCTCTTCAGTGCTCTTCTCTTCGCCTTCTTCGCCGCTACA 60
Query 61 CTCATCTGCAGAGTGGCGATTCGCCGGAGTAGCTTCTCCTTCGCCTCCGCCATCGCTGAG 120
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 61 CTCATCTGCAGAGTGGCGATTCGTCGGAGCAGCTTCTCCTTCGCTTCCGCCATCGCTGAG 120
Query 121 CTTGGTACCTCCGGACTCATGACTGAAGAGATTGTATTCAACGAGACATTGCTCGAATTC 180
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 CTTGGTTCCTCCGGTCTCATGACTGAAGATATTGTATTCAACGAGACATTGCTCGAGTTC 180
Query 181 GCCGCCATTGATCCCGGCGAACCTAAATTCAAGCAGGAAGTCGATTTGATTTCCGATTAC 240
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 GCCGCCATTGATCCCGGAGAACCTAACTTCAAACAGGAAGTCGATTTGATTTCCGATTAC 240
Query 241 GACCACACTCGGAGAAGCCACCGCCGACATTTCAGCTCCATGTC---AAGACCAACCGAG 297
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 241 GACCACACTCGGAGAAGCCACCGTCGACATTTCAGCTCCATGTCAATAAGACCAAGCGAG 300
Query 298 CAACCACGCCATGGGAGCCGAGACATTGC-T--TCCTCCAAGTTTCCGGTAA-------- 346
|||| ||||| || ||| |||||||||| | |||||||||||||||||||
Sbjct 301 CAACAACGCCGTGTGAGTAGAGACATTGCTTCCTCCTCCAAGTTTCCGGTAACGCTTCGT 360
Query 347 AC-TCTCAGGTTTATCGTTACTGGTCAGAGTTCAAAAGAAATTTACGCCTTTGGGCTCGT 405
| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TCTTCTCAGGCTTATCGTTACTGGTCAGAGTTCAAAAGAAATTTACGGCTTTGGGCTCGT 420
Query 406 AGAAGAGCTTATGAACCTAATATCATGTTAGATTTGATCGGTTTAGTCAAGAATCCGATC 465
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 421 AGAAGAGCTTATGAACCTAATATCATGTTAGATTTGATCAGATTAGTTAAGAATCCGATT 480
Query 466 GATGTTCACAACGGTGTTGTTTCGATTTCCAGTGAAAGATACTTATCTTGTGCAGTGGTT 525
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GATGTTCACAATGGTGTTGTTTCGATTTCGAGTGAAAGATACTTATCTTGTGCAGTGGTT 540
Query 526 GGAAATAGCGGTACATTGCTGAATAGTCAATACGGAGGTCTCATTGATAAACATGAGATT 585
|| ||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 541 GGGAATAGTGGTACATTGCTAAATAGTCAATACGGAGATCTCATTGATAAGCATGAGATT 600
Query 586 GTGATTCGGTTGAACAATGCGAAAACAGAGA-GTTTCGAGAAGAAGGTCGGATCGAAAAC 644
||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 601 GTGATTCGGTTGAACAATGCGAAAACAGAGAGGTTT-GAGAAGAAGGTTGGATCGAAAAC 659
Query 645 GAATATATCTTTCATAAATAGTAACATTTTGCATCAGTGTGGGAGAAGGGAGAGTTGTC- 703
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 660 AAATATATCTTTCATAAATAGTAACATTTTGCATCAATGTGGGAGAAGGGAGAGTTG-CT 718
Query 704 ATTGCCATCCTTATGGCGAAACAGTGCCTATTGTGTTGTATATTTGCCAACCGATTCATG 763
|||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 719 ATTGTCATCCTTATGGTGAAACAGTGCCTATTGTGATGTACATTTGCCAACCGATTCATG 778
Query 764 TTTTGGATTACACCTTGTGCAAACCGTCTCATCGAGCTCCTCTGCTTATCACTGATCCGA 823
||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 779 TTTTGGATTACACTTTGTGTAAACCATCTCATCGAGCTCCTCTGCTTATCACGGATCCGA 838
Query 824 GATTCGATGTCCTGTGTGCTAGAATCGTGAAGTATTACTCGGTGAAGAAGTTCTTGGAAG 883
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGTTCGATGTCATGTGTGCTAGAATCGTGAAGTATTACTCGGTGAAGAAGTTCTTGGAAG 898
Query 884 AGAAGAAAGCGGAAGGGTTTGTTGATTGGAGTAAAGATCATGAAGGCTCGTTGTTTCACT 943
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 AGAAGAAAGCGAAAGGGTTTGTCGATTGGAGTAAAGATCATGAAGGCTCGTTGTTTCACT 958
Query 944 ACTCGTCGGGTATGCAGGCTGTGATGCTTGCAGTGGGGATCTGTGAGAAAGTTAGTGTCT 1003
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 ATTCGTCGGGTATGCAGGCTGTGATGCTTGCAGTGGGGATTTGTGAGAAAGTTAGTGTCT 1018
Query 1004 TCGGGTTTGGGAAGTTGAATTCAACCAAGCACCATTACCATACTAATCAGAAAGCAGAGC 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCGGGTTTGGGAAGTTGAATTCAACCAAGCACCATTACCATACTAATCAGAAAGCAGAGC 1078
Query 1064 TGA-GTCTTCATGACTATGAAGCAGAGTATAAATTGTATCGCGACCTGGAGAGCAATCCC 1122
||| | ||||||||||||||||||||||||| ||||||||| |||||||| | || ||||
Sbjct 1079 TGAAG-CTTCATGACTATGAAGCAGAGTATAGATTGTATCGAGACCTGGAAAACAGTCCC 1137
Query 1123 AGGGCCATCCCATTCTTGCCAAAAGAATTCAAGATCCCTTTGGTACAAGTTTACCATTGA 1182
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGGGCCATTCCATTCTTACCAAAAGAATTCAAGATCCCTTTGGTACAAGTTTACCATTGA 1197
Query 1183 CACAT-CA-ATATA 1194
| || || |||||
Sbjct 1198 -ATATACATATATA 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5