BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470891
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08300.1 | Symbols: NVL | no vein-like | chr1:2614774-261882... 1810 0.0
AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, ... 710 0.0
> AT1G08300.1 | Symbols: NVL | no vein-like | chr1:2614774-2618823
FORWARD LENGTH=2241
Length=2241
Score = 1810 bits (980), Expect = 0.0
Identities = 1249/1379 (91%), Gaps = 17/1379 (1%)
Strand=Plus/Plus
Query 8 GCGCCGACCAATGCAAGGGAATCCCGACGGCTCGTGGTCACTACGCGCCTCCGCGTACGG 67
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 153 GCGCCGACCAATGCAAGGGAATCGCGACGGCTCGTGGTCACTACGCGCCTCCGCGTACGG 212
Query 68 TGGAAACGGCAACGGAAACGGAGGATATATTCCTCAAGCGACTCGTGTGTTTCCCAATTA 127
||||| |||||| ||||||||||| ||| |||||||| |||||| ||| |||| ||||||
Sbjct 213 TGGAAGCGGCAATGGAAACGGAGGGTATCTTCCTCAAACGACTCCTGTATTTCACAATTA 272
Query 128 CATTATC---CAGCAACAACCCATCAGATACAATTTCCAGACTCAGCAGAATCTCAACTT 184
|||| || || ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 273 CATTGTCAAACAACAACAACCCATCAGATACAATTTCCAGACGCAGCAGAATCTCAATTT 332
Query 185 CACTCACCCACAATTTGGCGGTGGCGCTAATGTAGAAGTCATGCGAATTGATAAGGCCAT 244
| |||| |||||||||||||| ||||||||||||||| | || ||||||||||||||| |
Sbjct 333 CCCTCATCCACAATTTGGCGGCGGCGCTAATGTAGAACTTATTCGAATTGATAAGGCCGT 392
Query 245 CAACAATACGCGTAAATCACTAATTGCTGCTGGAGAGAACGTTTCTTCGACTAGAGTGTC 304
|||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||
Sbjct 393 AAACAATACGCGTAAATCATTAATTGCTGCTGGAGACAACGTATCTTCGACTAGAGTTTC 452
Query 305 GCAATCAGTTTTAGAACAACTTCAGGCTGATGATATTTGGCGTTCCTTGGGGATACAAAT 364
|||||| ||||||| |||||||||||| ||| | ||||||||||||||||||| ||
Sbjct 453 GCAATCGGTTTTAGCACAACTTCAGGC---TGACACTTGGCGTTCCTTGGGGATATGGAT 509
Query 365 GCAAGATGTTCCTTCGCTTCGCCAACTCATGGCCCTTGAAGGCAAGATCATTGCCTTTAT 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 510 GCAAGATGTTCCTTCGCTTCGCCAACTCATGGCCCTTGAAGGCAAGATCATTGCATTTAT 569
Query 425 TCACTGCTTCATTGGCGCTAGAGGAATCGTGAC-TCTGCATGATTTGGAAGTAGCAATAT 483
||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 570 TCACTGCTTCATTGGCGCTAGAGGAATCGTGACAT-TGCATGATTTGGAAGTGGCAATAT 628
Query 484 GCCGTAACGAGTTCGTTGGTTGTTTTGATGATCTGGGATTGGGACCTTTGCTGCAACATC 543
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 629 GCCAAAACGAGTTTGTTGGTTGTTTTGATGATCTGGGATTGGGACCTTTGCTGCAGCATC 688
Query 544 CACTTGTCTTGCTCTATTTTCCATCCATCTCTGGTTCTACTGCCCCAGTTCAA-ATCACT 602
|||||||||||||||||||||||||| ||| | ||||||||||||||||| || ||||||
Sbjct 689 CACTTGTCTTGCTCTATTTTCCATCCGTCTATTGTTCTACTGCCCCAGTT-AAGATCACT 747
Query 603 AGTGAGGAGTTAATCTCATTTCTTGATAGCTTTCTAAAAACTTACGATATGGACGATGTT 662
||||||||| |||| ||||| |||||||||| |||||| ||||||||||| |||||||||
Sbjct 748 AGTGAGGAGATAATATCATTACTTGATAGCTATCTAAACACTTACGATATTGACGATGTT 807
Query 663 AAGCTCGATGAATTCCTGGATTTTGTTGCGGAGGAAAAAGCAGTTACAAGCAAGGAAAAG 722
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 808 AAGCTCGATGAATTCCTGGATTTTGTTGCTGAGGCTAAAGCAGTTACAAGCAAGGAAAAG 867
Query 723 CTTGGTGTCCGTATTCAGAGCTTGCGGATGTATGTATCTTTCATTCAAAACGCGAAGAGA 782
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 868 CTTGGTGTCCGTATTCAGAACTTGCGGATGTATGTATCTTTCATTCAAGATGCGAAGAGA 927
Query 783 CAAGAAGGCGAAACATTGAAGATCTTGCTGACTGGACTGCATCAGAAGTATCACATCCTC 842
||||||||||||| |||||||||| | |||||| ||||||||||||||||| |||||||
Sbjct 928 CAAGAAGGCGAAATATTGAAGATCGTATTGACTGAACTGCATCAGAAGTATCGCATCCTC 987
Query 843 CCATCAAAGAAACAACAGCAAGATAAAGATTATTGTGGCAAGCATACAAGATTTAATTCA 902
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 988 TCATCAAAGAAACAACGGCAAGATAAGGATTATTGTGGCAAGCATACAAGATTTAATTCA 1047
Query 903 TTGAGCTCGGAGGACAATGATAGTGCTGATTATGAGGTCGAAAATGTTAATAGTTGTGAC 962
|||||||||||| ||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct 1048 CCGAGCTCGGAGGAAAATGATAGTGCTGATTATGAGGTTGAAAATGTTAAAAGATCTGAC 1107
Query 963 CAATTCAGTAGTTGCCCATATCCATCCGTTGCAGAAGAGATGAAGCAGCCTGTGAGCTCC 1022
|| ||||||||||| || ||| |||| | || ||||||| | ||||||| || |||||||
Sbjct 1108 CATTTCAGTAGTTGTCCGTATTCATCTGCTGAAGAAGAGGTTAAGCAGCTTGGGAGCTCC 1167
Query 1023 AATaaaaaaaGGAAGGCTGAAAGTCGTAGCCATGAAAAATCTGATTTGTCCAAA-CTGCG 1081
| ||| |||||||||||||||||||||| |||||||||||||||| ||| || ||||
Sbjct 1168 AGTAAGAAAAGGAAGGCTGAAAGTCGTAATCATGAAAAATCTGATTC-TCCCAAGCTGCT 1226
Query 1082 TAGAAGATACCCCTCTAAATTACTTAGAGGACATGTGAAACAAGAGATACATAACTTGGC 1141
||||||| ||||||||| || | ||||||||||||||||||| |||||| ||| | |||
Sbjct 1227 TAGAAGAGGCCCCTCTAAGTTGCGTAGAGGACATGTGAAACAAAAGATACCTAAATCGGC 1286
Query 1142 GGATGATTCTGATGCTAAGCAGATTTTCAGTGGCAATGAGGCTGATTTCACACTTTCTGA 1201
|||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1287 AGATGATTCTGATGC---GCAGATTTTCAGTGTCAATGACGCTGATTTCACTCTTTCTGA 1343
Query 1202 AGGAGCTTTGAGATTGTTCATTTCAACTTGGAAGGATACATGTAAAGAGCTAAGCATGTC 1261
||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1344 AGGAGCTTTGAAATTGTTCATCTCAACTTGGAAGGAAACATGTAAAGAGCTAAGCATCTC 1403
Query 1262 AATGTTTGTGAAGAAATTGTTGTCTTTTTACAACTTAGGGGGATCCGAAGTACAAGCTCA 1321
| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 1404 AGTGTTTGTCAAGAAATTGTTGTCTTTTTACAACTTGGGGGGATCCGAAGTACACGGTCA 1463
Query 1322 GATTAAAAGAGCTAAAGC-GATGTCATCATTTCCATTTTTTGGATTACTACATGTCGCT 1379
|||||||| ||||| ||| | |||| |||||||||||| ||||||||||||||||||||
Sbjct 1464 GATTAAAATAGCTACAGCTG-TGTCCTCATTTCCATTTGTTGGATTACTACATGTCGCT 1521
> AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase family protein | chr4:7975191-7987620
FORWARD LENGTH=8252
Length=8252
Score = 710 bits (384), Expect = 0.0
Identities = 578/670 (86%), Gaps = 20/670 (3%)
Strand=Plus/Plus
Query 208 GCGCTAATGTAGAAGTCATGCGAATTGATAAGGCCATCAACAATACGCGTAAATCACTAA 267
|||| || || || ||| |||| ||||||||||| | ||||| |||||||||| | |
Sbjct 582 GCGC-AAAGTTGATGTCTTGCGGATTGATAAGGCTGTTAACAAGACGCGTAAATTATTTG 640
Query 268 TTGCTGCTGGAGAGAACGTTTCTTCGACTAGAGTGTCGCA-ATCAGTTTTAGAACAACTT 326
||||||||||||||| ||||||||||||||||||||| | | | ||||||||| | |||
Sbjct 641 TTGCTGCTGGAGAGAGTGTTTCTTCGACTAGAGTGTCG-AGAGCTGTTTTAGAAGAGCTT 699
Query 327 CAGGCTGATGATATTTGGCGTTCCTTGGG-GATACAAATGCAAGATGTTCCTTCGCTTCG 385
|| |||||| | ||||||||||||||| | | |||||||||||||||||||| |||||
Sbjct 700 CAAGCTGAT--T-CTTGGCGTTCCTTGGGTG-TGCAAATGCAAGATGTTCCTTCTCTTCG 755
Query 386 CCAACTCATGGCCCTTGAAGGCAAGATCATTGCCTTTATTCACTGCTTCATTGGCGCTAG 445
||||| |||||| ||||||||||||||| ||| ||||||||||||||| |||| |||||
Sbjct 756 TCAACTTATGGCCATTGAAGGCAAGATCAATGCATTTATTCACTGCTTCGTTGGGGCTAG 815
Query 446 AGGAATCGTGACTCTGCATGATTTGGAAGTAGCAATATGCCGTAACGAGTTCGTTGGTTG 505
| |||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||| ||
Sbjct 816 AAGAATTGTGACCCTGCATGATTTGGAAGTGGCAATATGCCGGAACGAGTTTGTTGATTC 875
Query 506 TTTTGATGATCTGGGATTGGGACCTTTGCTGCAACATCCACTTGTCTTGCTCTATTTTCC 565
||| |||||||||| |||||||||||||||||| |||||||| || ||||| ||||||||
Sbjct 876 TTTCGATGATCTGGAATTGGGACCTTTGCTGCAGCATCCACTGGTTTTGCTGTATTTTCC 935
Query 566 ATCCATCTCTGGTTCTACTGCCCCAGTTCAA-ATCACTAGTGAGGAGTTAATCTCATTTC 624
||| || || ||||||||| |||||| || ||||||||||||||| |||| |||||||
Sbjct 936 ATCGATATCCAGTTCTACTGGACCAGTT-AAGATCACTAGTGAGGAGATAATATCATTTC 994
Query 625 TTGATAGCTTTCTAAAAACTTACGAT-ATGGACGATGTTAAGCTCGATGAATTCCTGGAT 683
||||||||| ||| | ||||| || | || |||||||||||||||||||| ||| ||
Sbjct 995 TTGATAGCTATCTGCACACTTA-TATGACAGAAGATGTTAAGCTCGATGAATTTCTGAAT 1053
Query 684 TTTGTTGCGGAGGAAAAAG-CAGTTACAAGCAAGGAAAAGCTTGGTGTCCGTATTCAGAG 742
|||||||| || ||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1054 TTTGTTGC-AAGTCAAAAGTCAGTTACAAGCAAGGAAAAGCTTGGTGTGCGTATTCAGAG 1112
Query 743 CTTGCGGATGTATGTATCTTTCATTCAAAACGCGAAGAGACAAGAAGGCGAAACATTGAA 802
|||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||
Sbjct 1113 CTTGCGGATGTATGTATCTTTCATTCTAGACGCGAAGAGACAAGAAGGTGAAACACTGAA 1172
Query 803 -GATCTTGCTGACTG-GACTGCATCAGAAGTATCACATCCTCC-CATCAAAGAAACAACA 859
| |||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||
Sbjct 1173 AG-TCTTACTGACTGAG-CTGCATCAGAAGTATCACATCC-CCTCATCAAAGAAACAACA 1229
Query 860 GCAAGATAAA 869
|| |||||||
Sbjct 1230 GCGAGATAAA 1239
Score = 568 bits (307), Expect = 7e-161
Identities = 454/523 (87%), Gaps = 18/523 (3%)
Strand=Plus/Plus
Query 865 ATAAAGATTATTGTGGCAAGCATACAAGATTTAATTCATT-GAGCTCGGAGGACAATGAT 923
|||| ||||||||||||||||||| ||||||| |||| || ||||| || || ||||||
Sbjct 1283 ATAAGGATTATTGTGGCAAGCATATAAGATTTGATTC-TTCAAGCTCAGATGAAAATGAT 1341
Query 924 AGTGCTGATTATGAGG-TCGAAAATGTTAATAGTTGTGACCAAT-TCAGTAGTTGCCCAT 981
| || | |||||||| | | |||| ||||||||| ||||| || ||| |||||| ||||
Sbjct 1342 AATG-T--TTATGAGGTTAG-AAATCTTAATAGTTCTGACC-ATATCAATAGTTGTCCAT 1396
Query 982 ATCCATCCGTTGCAGAAGAGATGAAGCAG-CCTGTGAGCTCCAATaaaaaaaGGAAGGCT 1040
||||||| ||||| ||||||||||||| | | || | |||||||||| |||||||||| |
Sbjct 1397 ATCCATCTGTTGCGGAAGAGATGAAGC-GTCTTGGGGGCTCCAATAAGAAAAGGAAGGGT 1455
Query 1041 GAAAGTCGTAGCCATGAAAAATCTGATTTGTCCAAACTGCGTAGAAGATACCCCTCTAAA 1100
||||| |||| |||||||||||||||| |||||||||| ||||| || ||||||||||
Sbjct 1456 GAAAGACGTAATCATGAAAAATCTGATTCCTCCAAACTGCTTAGAAAATCCCCCTCTAAA 1515
Query 1101 TTACTTAGAGGACATGTGAAACAAGAGATACATAACTTGGCGGATGATTCTGATGCTAAG 1160
|||| | |||||||| |||||||||||||| ||| ||||| ||||||||||| ||||||
Sbjct 1516 TTAC--A-AGGACATGCGAAACAAGAGATACCTAAATTGGCTGATGATTCTGAAGCTAAG 1572
Query 1161 CAGATTTTCAGTGGCAATGAGGCTGATTTCACACTTTCTGAAGGAGCTTTGAGATTGTTC 1220
|| ||||||||| | ||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 1573 AAGGTTTTCAGTGTCGATGAGGCTGATTTTACACTTTCTGAAGGAGATTTAAGATTGTTC 1632
Query 1221 ATTTCAACTTGGAAGGATACATGTAAAGAGCTAAGCATGTCAATGTTTGT-GAAGAAATT 1279
||||||||||||||||| |||||||||||||||||||| |||| |||||| | ||||| |
Sbjct 1633 ATTTCAACTTGGAAGGACACATGTAAAGAGCTAAGCATTTCAACGTTTGTCG-AGAAAAT 1691
Query 1280 GTTGTCTTTTTACAACTTAGGGGGATCCGAAGTACA-AGCTCAGATTAAAAGAGCTAAAG 1338
|||||||||||||||||| ||||| || |||| | | |||||||||||||||||||||||
Sbjct 1692 GTTGTCTTTTTACAACTTGGGGGGCTCTGAAGGA-AGAGCTCAGATTAAAAGAGCTAAAG 1750
Query 1339 CGATGTCATCATTTCCATTTTTTGGATTACTACATGTCGCTGT 1381
|||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct 1751 CGATGTCATCATTTCCGTTTGTTGGATTACTAAATGTCGCTGT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68373142290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5