BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470895
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08340.1 | Symbols: | Rho GTPase activating protein with PA... 2002 0.0
AT2G27440.1 | Symbols: | pseudogene of rac GTPase activating p... 451 7e-126
> AT1G08340.1 | Symbols: | Rho GTPase activating protein with
PAK-box/P21-Rho-binding domain | chr1:2631068-2632871 FORWARD
LENGTH=1438
Length=1438
Score = 2002 bits (1084), Expect = 0.0
Identities = 1237/1309 (94%), Gaps = 18/1309 (1%)
Strand=Plus/Plus
Query 45 agagaagagatagagagaCTTAGAAAGCGCGGTAAGACCGAACTTTGGCGGTTCGGCGGC 104
|||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 97 AGAGGAGAGATAGAGAGACTTAGAAAGCTCGGTAAGTCCGAACTTTGGTGGTTCGGCGGC 156
Query 105 TCTACGTCGTCTGTTGCTCGAGTCGTCCTGGAGCTCGCCCGTTGTTTCTCGACGGCGGAG 164
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 TCTACGTCGTCTGTAGGTCGAGTCGTCCTGGAGCTCGCCCGTTGTTTCTCGACGGCGGAG 216
Query 165 GTGGAAGAAAACGACCGTCCAGCCATGGATATTGGAGGTCCTACCAATATCCGCCACGTG 224
|||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 217 GTGGAAGACAACGACCGACCAGCCATGGACATTGGCGGTCCAACCAATATCCGCCACGTG 276
Query 225 GCTCACGTTACCTTCGATCGTTTCAATGGCTTCCTCGGTCTTCCCTCTGAGTTCGAGCCT 284
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 277 GCTCACGTTACCTTCGATCGCTTCGATGGCTTCCTCGGCCTTCCCTCTGAGTTCGAGCCT 336
Query 285 GATGTCCCTACAAAAGCTCCCAGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 344
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GATGTCCCCAGAAAAGCTCCCAGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 396
Query 345 ATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTGTGATACTGTTGCTATTGCAG 404
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 397 ATGCAGTTATCATACGACTCGAGAGGGAACTGTGTTCCTGTGATACTGTTGCTATTGCAG 456
Query 405 AGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGAG 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGAG 516
Query 465 AACAGCGAGGAAGAGTTTGTTAGGGAGCAGCTTAATAAAGGGATCATACCAGATGGAATT 524
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 517 AACAGCGAGGAAGAGTTTGTTAGGGAGCAGCTTAATAAAGGGATCATACCTGATGGGATT 576
Query 525 GATGTCCATTGTTTAGCCGGACTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGGTGTT 584
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 577 GATGTCCATTGTTTAGCCGGTCTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGGGGTA 636
Query 585 CTTGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGTTAAG 644
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 637 CTGGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGTCAAA 696
Query 645 GTTGTGAGACTCTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCTCATG 704
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GTTGTGAGACTTTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCTCATG 756
Query 705 GCTGATGTTGTTCAGTTTGAGCATGTTAATAAGATGAACTCTCGTAACCTTGCTTTAGTC 764
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GCTGATGTTATTCAGTTTGAGCATGTTAATAAGATGAACTCTCGTAACCTTGCTTTAGTC 816
Query 765 TTTGCCCCTAATATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGGTCCAA 824
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TTTGCCCCCAACATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGGTCCAA 876
Query 825 GTGATGAAGTTGCTCAAGAGCCTCACAGAGAAAACTGTGAGAGAAAGGGAAGCTTCCTCT 884
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 877 GTGATGAAGTTGCTCAAGAGCCTCACAGAGAAGACTGTGAGAGAAAGGGAAGCTTCCTCT 936
Query 885 TCTGTGGTTGACagaagatgtagcaaagaagctgaagatggcgagaaagaagaagacaat 944
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 937 TCTGTGGTTGACAGAAGATGTAGCAAAGAAGCCGAAGATGGCGAGAAAGAAAAAGACAAT 996
Query 945 gaagaagaggaagaagaagaggaagaagaagaagaagaagaagatgaagatgaagaagaa 1004
||||| || |||||||| || ||||| || |||||||||||||||||||||||||| |||
Sbjct 997 GAAGAGGAAGAAGAAGATGAAGAAGAGGAGGAAGAAGAAGAAGATGAAGATGAAGATGAA 1056
Query 1005 gaagaagaagGAAATGGTGTGTACATAATTAAGGAGGAAGAAGCATCAGAGAGAATGAAA 1064
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1057 GAAGAAGAAGGAGATGGTGTGTACATAATTAAGGAGGAAGAAGCATCAGAGATAATAAAA 1116
Query 1065 GTGGTTGCTGATGAACACAAGCCAGGAAGCATGAAGAGTGAGTTTGAGGGATCTAGTGCT 1124
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1117 GTGGTTGCTGATGAACACAAGTCAGGAAGCATAAAGAGTGAGTTTGAGGGATCTAGTGCT 1176
Query 1125 TCGGATTCAAAGGGAGATAATGGAGTTGTGCAGCCACCCATTTGCAGTTCGAACC-GTAT 1183
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1177 ACGGATTCAAAGGGAGATAATGGAGTTGTGCAGCCACCCATTTGCAGCTCGAACCCGTA- 1235
Query 1184 AGGAAACAAGTGAAAATTGATGtttttttttttttctttttAGTTTACTGTGTGTTT-GG 1242
|||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||
Sbjct 1236 -GGAAGCAAGTGAAG-TTGATGCTTTTTTT-----CTTTTTAGTTTACTGTGTGTTTTGG 1288
Query 1243 ATTGCTATATTTGATTTGCATTATGCATATGTAACTTCTAAGTAATGTAGTTTGCTGTTG 1302
|||||| ||||||||| |||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 1289 ATTGCTTTATTTGATT-GCATAATGCATATGTAACTTCTAAGTGATGTAGTTTGTTGTTG 1347
Query 1303 AATGGTGATATGATATGACTATATGAGACTAACTCTGTGGGATGAACAA 1351
||||||||||||| |||| | || |||||||||||||||||||||
Sbjct 1348 AATGGTGATATGAAATGA--A---GA--CTAACTCTGTGGGATGAACAA 1389
> AT2G27440.1 | Symbols: | pseudogene of rac GTPase activating
protein | chr2:11734803-11737335 FORWARD LENGTH=1124
Length=1124
Score = 451 bits (244), Expect = 7e-126
Identities = 499/620 (80%), Gaps = 26/620 (4%)
Strand=Plus/Plus
Query 52 agatagagagaCTTAGAAAG-CGCGGTAAGACCGAACTTTGGCGGTTCGGCGGCTCTACG 110
|||||| | || | || ||| ||||| ||| ||||||| | |||||||||| |||| ||
Sbjct 122 AGATAGCGCGAGTGAG-AAGACGCGGAAAGCCCGAACTCTCGCGGTTCGGCAGCTC--CG 178
Query 111 TCGTCTGTTGCTCGAGTCGTCCTGGAGCTCGCCCGTTG-TTTCTCGACG-G--CGGA-GG 165
|||| |||| |||| ||||| | ||||| | ||||| ||| |||| | | | ||
Sbjct 179 -CGTCAGTTGGTCGAATCGTCTTCGAGCTATCTCGTTGCTTT-TCGA-GAGATATAATGG 235
Query 166 TGGAAGAAAACGACCGTCCA-GCCATGGATATTGGAGGTCCTACCAATATCCGC-CACGT 223
||| |||||||| || || |||||||| ||| | | || |||||||| | | || ||
Sbjct 236 CGGAGGAAAACGAACG-GCATGCCATGGACATTAGTCGCCCAACCAATAT-CTCTCATGT 293
Query 224 GGCTCACGTTACCTTCGATCGTTTCAATGGCTTCCTCGGTCTTCCCTCTGAGTTCGAGCC 283
|||||| || || | |||||| ||| |||| || || |||||||| ||||| ||||||||
Sbjct 294 GGCTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTCGAGCC 353
Query 284 TGATGT-CCCTACAAAAGCTCCC-AGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAG 341
||| || ||| | | |||| ||| |||||||||||||| ||||||||||| || ||||||
Sbjct 354 TGACGTACCC-A-AGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAG 411
Query 342 TCAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTGTGATACTGTTGCTATTG 401
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 412 TCAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTACCATACTCACGCTATTA 471
Query 402 CAGAGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGA 461
|| |||||||| || ||||||||||| ||||||| ||||||| | ||||||||||| ||
Sbjct 472 CAAAGCCGGCTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGG 531
Query 462 GAGAACAGCGAGGAAGAGTTTGTTAGGGA-GCAGCTTAAT-AAAGG-GATCATACCAGAT 518
|| ||||| ||||| |||||| |||| || | || |||| ||||| | || |||||||
Sbjct 532 GATAACAGTGAGGAGGAGTTTATTAGAGAAG-AG-TTAAACAAAGGAG-TCCTACCAGAA 588
Query 519 GGAATTGATGTCCATTGTTTAGCCGGACTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGA 578
|| || ||| |||| ||| | ||||||||||| ||||| |||||||||||| | |||| |
Sbjct 589 GGCATCGATATCCACTGTCTCGCCGGACTTATAAAGGCATGGTTCAGAGAGTTACCGAAA 648
Query 579 GGTGTTCTTGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTT 638
|| || || ||| |||| ||||| | |||||||||||||||||||||| |||||||||
Sbjct 649 GGGGTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGTGAGTCAGGGGAGGATTTT 708
Query 639 GTTAAGGTTGTGAGACTCTT 658
|| |||||||||||||||||
Sbjct 709 GTGAAGGTTGTGAGACTCTT 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5