BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470895 Length=1351 Score E Sequences producing significant alignments: (Bits) Value AT1G08340.1 | Symbols: | Rho GTPase activating protein with PA... 2002 0.0 AT2G27440.1 | Symbols: | pseudogene of rac GTPase activating p... 451 7e-126 > AT1G08340.1 | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr1:2631068-2632871 FORWARD LENGTH=1438 Length=1438 Score = 2002 bits (1084), Expect = 0.0 Identities = 1237/1309 (94%), Gaps = 18/1309 (1%) Strand=Plus/Plus Query 45 agagaagagatagagagaCTTAGAAAGCGCGGTAAGACCGAACTTTGGCGGTTCGGCGGC 104 |||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct 97 AGAGGAGAGATAGAGAGACTTAGAAAGCTCGGTAAGTCCGAACTTTGGTGGTTCGGCGGC 156 Query 105 TCTACGTCGTCTGTTGCTCGAGTCGTCCTGGAGCTCGCCCGTTGTTTCTCGACGGCGGAG 164 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 TCTACGTCGTCTGTAGGTCGAGTCGTCCTGGAGCTCGCCCGTTGTTTCTCGACGGCGGAG 216 Query 165 GTGGAAGAAAACGACCGTCCAGCCATGGATATTGGAGGTCCTACCAATATCCGCCACGTG 224 |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||| Sbjct 217 GTGGAAGACAACGACCGACCAGCCATGGACATTGGCGGTCCAACCAATATCCGCCACGTG 276 Query 225 GCTCACGTTACCTTCGATCGTTTCAATGGCTTCCTCGGTCTTCCCTCTGAGTTCGAGCCT 284 |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct 277 GCTCACGTTACCTTCGATCGCTTCGATGGCTTCCTCGGCCTTCCCTCTGAGTTCGAGCCT 336 Query 285 GATGTCCCTACAAAAGCTCCCAGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 344 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 GATGTCCCCAGAAAAGCTCCCAGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 396 Query 345 ATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTGTGATACTGTTGCTATTGCAG 404 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 397 ATGCAGTTATCATACGACTCGAGAGGGAACTGTGTTCCTGTGATACTGTTGCTATTGCAG 456 Query 405 AGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGAG 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 AGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGAG 516 Query 465 AACAGCGAGGAAGAGTTTGTTAGGGAGCAGCTTAATAAAGGGATCATACCAGATGGAATT 524 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 517 AACAGCGAGGAAGAGTTTGTTAGGGAGCAGCTTAATAAAGGGATCATACCTGATGGGATT 576 Query 525 GATGTCCATTGTTTAGCCGGACTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGGTGTT 584 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 577 GATGTCCATTGTTTAGCCGGTCTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGGGGTA 636 Query 585 CTTGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGTTAAG 644 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 637 CTGGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGTCAAA 696 Query 645 GTTGTGAGACTCTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCTCATG 704 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 GTTGTGAGACTTTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCTCATG 756 Query 705 GCTGATGTTGTTCAGTTTGAGCATGTTAATAAGATGAACTCTCGTAACCTTGCTTTAGTC 764 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 757 GCTGATGTTATTCAGTTTGAGCATGTTAATAAGATGAACTCTCGTAACCTTGCTTTAGTC 816 Query 765 TTTGCCCCTAATATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGGTCCAA 824 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 817 TTTGCCCCCAACATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGGTCCAA 876 Query 825 GTGATGAAGTTGCTCAAGAGCCTCACAGAGAAAACTGTGAGAGAAAGGGAAGCTTCCTCT 884 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 877 GTGATGAAGTTGCTCAAGAGCCTCACAGAGAAGACTGTGAGAGAAAGGGAAGCTTCCTCT 936 Query 885 TCTGTGGTTGACagaagatgtagcaaagaagctgaagatggcgagaaagaagaagacaat 944 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 937 TCTGTGGTTGACAGAAGATGTAGCAAAGAAGCCGAAGATGGCGAGAAAGAAAAAGACAAT 996 Query 945 gaagaagaggaagaagaagaggaagaagaagaagaagaagaagatgaagatgaagaagaa 1004 ||||| || |||||||| || ||||| || |||||||||||||||||||||||||| ||| Sbjct 997 GAAGAGGAAGAAGAAGATGAAGAAGAGGAGGAAGAAGAAGAAGATGAAGATGAAGATGAA 1056 Query 1005 gaagaagaagGAAATGGTGTGTACATAATTAAGGAGGAAGAAGCATCAGAGAGAATGAAA 1064 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1057 GAAGAAGAAGGAGATGGTGTGTACATAATTAAGGAGGAAGAAGCATCAGAGATAATAAAA 1116 Query 1065 GTGGTTGCTGATGAACACAAGCCAGGAAGCATGAAGAGTGAGTTTGAGGGATCTAGTGCT 1124 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1117 GTGGTTGCTGATGAACACAAGTCAGGAAGCATAAAGAGTGAGTTTGAGGGATCTAGTGCT 1176 Query 1125 TCGGATTCAAAGGGAGATAATGGAGTTGTGCAGCCACCCATTTGCAGTTCGAACC-GTAT 1183 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1177 ACGGATTCAAAGGGAGATAATGGAGTTGTGCAGCCACCCATTTGCAGCTCGAACCCGTA- 1235 Query 1184 AGGAAACAAGTGAAAATTGATGtttttttttttttctttttAGTTTACTGTGTGTTT-GG 1242 |||| |||||||| |||||| ||||||| |||||||||||||||||||||| || Sbjct 1236 -GGAAGCAAGTGAAG-TTGATGCTTTTTTT-----CTTTTTAGTTTACTGTGTGTTTTGG 1288 Query 1243 ATTGCTATATTTGATTTGCATTATGCATATGTAACTTCTAAGTAATGTAGTTTGCTGTTG 1302 |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||| ||||| Sbjct 1289 ATTGCTTTATTTGATT-GCATAATGCATATGTAACTTCTAAGTGATGTAGTTTGTTGTTG 1347 Query 1303 AATGGTGATATGATATGACTATATGAGACTAACTCTGTGGGATGAACAA 1351 ||||||||||||| |||| | || ||||||||||||||||||||| Sbjct 1348 AATGGTGATATGAAATGA--A---GA--CTAACTCTGTGGGATGAACAA 1389 > AT2G27440.1 | Symbols: | pseudogene of rac GTPase activating protein | chr2:11734803-11737335 FORWARD LENGTH=1124 Length=1124 Score = 451 bits (244), Expect = 7e-126 Identities = 499/620 (80%), Gaps = 26/620 (4%) Strand=Plus/Plus Query 52 agatagagagaCTTAGAAAG-CGCGGTAAGACCGAACTTTGGCGGTTCGGCGGCTCTACG 110 |||||| | || | || ||| ||||| ||| ||||||| | |||||||||| |||| || Sbjct 122 AGATAGCGCGAGTGAG-AAGACGCGGAAAGCCCGAACTCTCGCGGTTCGGCAGCTC--CG 178 Query 111 TCGTCTGTTGCTCGAGTCGTCCTGGAGCTCGCCCGTTG-TTTCTCGACG-G--CGGA-GG 165 |||| |||| |||| ||||| | ||||| | ||||| ||| |||| | | | || Sbjct 179 -CGTCAGTTGGTCGAATCGTCTTCGAGCTATCTCGTTGCTTT-TCGA-GAGATATAATGG 235 Query 166 TGGAAGAAAACGACCGTCCA-GCCATGGATATTGGAGGTCCTACCAATATCCGC-CACGT 223 ||| |||||||| || || |||||||| ||| | | || |||||||| | | || || Sbjct 236 CGGAGGAAAACGAACG-GCATGCCATGGACATTAGTCGCCCAACCAATAT-CTCTCATGT 293 Query 224 GGCTCACGTTACCTTCGATCGTTTCAATGGCTTCCTCGGTCTTCCCTCTGAGTTCGAGCC 283 |||||| || || | |||||| ||| |||| || || |||||||| ||||| |||||||| Sbjct 294 GGCTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTCGAGCC 353 Query 284 TGATGT-CCCTACAAAAGCTCCC-AGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAG 341 ||| || ||| | | |||| ||| |||||||||||||| ||||||||||| || |||||| Sbjct 354 TGACGTACCC-A-AGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAG 411 Query 342 TCAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTGTGATACTGTTGCTATTG 401 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 412 TCAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTACCATACTCACGCTATTA 471 Query 402 CAGAGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGA 461 || |||||||| || ||||||||||| ||||||| ||||||| | ||||||||||| || Sbjct 472 CAAAGCCGGCTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGG 531 Query 462 GAGAACAGCGAGGAAGAGTTTGTTAGGGA-GCAGCTTAAT-AAAGG-GATCATACCAGAT 518 || ||||| ||||| |||||| |||| || | || |||| ||||| | || ||||||| Sbjct 532 GATAACAGTGAGGAGGAGTTTATTAGAGAAG-AG-TTAAACAAAGGAG-TCCTACCAGAA 588 Query 519 GGAATTGATGTCCATTGTTTAGCCGGACTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGA 578 || || ||| |||| ||| | ||||||||||| ||||| |||||||||||| | |||| | Sbjct 589 GGCATCGATATCCACTGTCTCGCCGGACTTATAAAGGCATGGTTCAGAGAGTTACCGAAA 648 Query 579 GGTGTTCTTGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTT 638 || || || ||| |||| ||||| | |||||||||||||||||||||| ||||||||| Sbjct 649 GGGGTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGTGAGTCAGGGGAGGATTTT 708 Query 639 GTTAAGGTTGTGAGACTCTT 658 || ||||||||||||||||| Sbjct 709 GTGAAGGTTGTGAGACTCTT 728 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66515722125 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5