BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470898
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08370.1 | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:263818... 2359 0.0
> AT1G08370.1 | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638181-2640554
FORWARD LENGTH=1465
Length=1465
Score = 2359 bits (1277), Expect = 0.0
Identities = 1394/1451 (96%), Gaps = 6/1451 (0%)
Strand=Plus/Plus
Query 2 AAGTAGACAACAAAATAGCGAAGTGCGTTCAAAAAGTTAGCGTTTTCGTCTCCGTCCCCA 61
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 17 AAGCAGACAACAAAATAGCGAAGTGCGTTCCAAAAGTTAGCGTTTTCGTCTCCGTCCCCA 76
Query 62 AATCTCACAGCTTCCGTAAATCAGAATTCTAGGGTTCTTCCGATTAGGCTAAAATCGAAT 121
|||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 77 AATCTCTCAGCTACCTTAAATCAGAATTCTAGGGTTCTTCCGATTAGGGTAAAATCGAAT 136
Query 122 CGAGA-TTCCCTAAAAATCTGAGCTTTGATTTATAAAAGATGTCTCAGAACGGGAAGATA 180
| ||| ||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 137 CCAGATTTCCC-AAAATTCTGATCTTTGATTTATAAAAGATGTCTCAAAACGGGAAGATA 195
Query 181 ATCCCAAATCTGGACCAGAACAGTACGAGGCTCCTCAATCTCACAGTTCTCCAGCGGATC 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATCCCAAATCTGGACCAAAACAGTACGAGGCTCCTCAATCTCACAGTTCTCCAGCGGATC 255
Query 241 GATCCATACATCGAGGAAATCCTCATCACAGCCGCTCATGTCACTTTCTATGAATTCAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GATCCATACATCGAGGAAATCCTCATCACAGCCGCTCATGTCACTTTCTATGAATTCAAC 315
Query 301 ATTGAGCTCAGCCAATGGAGTCGTAAGGATGTTGAAGGATCTTTGTTCGTTGTCAAAAGA 360
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 316 ATTGAGCTCAGCCAATGGAGTCGTAAGGACGTTGAAGGATCTTTGTTTGTTGTCAAAAGA 375
Query 361 AGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGATAATCTGGTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGATAATCTGGTG 435
Query 421 GAGAATCTCCTGGGAGATTTTGAGTATGAAGTCCAAGGTCCTTATTTACTTTACCGTAAT 480
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 436 GAGAATCTCCTGGGAGATTTTGAGTATGAAGTACAAGGTCCATATTTACTTTACCGTAAT 495
Query 481 GCATCTCAAGAAGTAAATGGCATTTGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GCATCTCAAGAAGTAAATGGCATTTGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCA 555
Query 541 ACTCTTTTCAACAGGATACTTAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCA 600
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 556 ACTCTTTTCAACAGAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCA 615
Query 601 TCTTCAAAAAGTGAGTTTGAGGAATTGGAAGCTAAGCCTACAATGGCAGTTATGGATGGT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TCTTCAAAGAGTGAGTTTGAGGAATTGGAAGCTAAGCCTACAATGGCAGTTATGGATGGT 675
Query 661 CCTCTTGAACCATCATCAACTGCTAGGGATGCCCCTGATGATCCTGCTTTCGTCAACTTC 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 676 CCTCTTGAACCATCATCAACTGCTAGGGATGCCCCTGATGATCCTGCTTTTGTCAACTTC 735
Query 721 TTTAGCTCAACGATGACTCTTGGGAACACTGCGAGTGGGTCAGCAAGTGGACCACCTTAC 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 736 TTTAGCTCAACGATGAATCTTGGGAACACTGCGAGTGGGTCAGCAAGTGGACC---TTAC 792
Query 781 CAATCATCAGCGATTCCTCACCAACCTCACCAACCTCACCAATCCACCATTGCTCCTCCT 840
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 793 CAATCATCAGCGATTCCTCACCAACCTCACCAGCCTCACCAACCCACCATTGCTCCTCCT 852
Query 841 GTAGCGGCAACAGCACCTCCACAGATACAATCACCACCGCCTCTACCATCCTCCTCTCCT 900
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 853 GTAGCGGCAGCAGCACCTCCACAGATACAATCACCACCGCCTCTACAATCCTCCTCTCCT 912
Query 901 CTGATGACTCTCTTTGACAACAACCCTGATCTTATCAGCAGCAACTCCAATGTTCACGCC 960
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 913 CTGATGACTCTCTTTGACAACAACCCTGAAGTTATCAGCAGCAACTCCAACATTCACACA 972
Query 961 GATTTGGTGAAGCCGTCTTTCTTTGGGCCCCCGCGAATGATGGCACAACCACACCTCATT 1020
|||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 973 GATTTGGTGACGCCGTCTTTCTTTGGCCCCCCACGAATGATGGCACAGCCACACCTCATT 1032
Query 1021 CCTGGTGTATCTATGCCCACTGCTCCTCCTCTCAATCCTAATAATGCGAGTCACCAGCAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CCTGGTGTATCTATGCCCACTGCTCCTCCTCTCAATCCTAATAATGCGAGTCACCAGCAG 1092
Query 1081 CGGCCATATGGTACTCCGGTGCTCCAGCCTTTCCCACCCCCAACTCCACCACCATCACTC 1140
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CGGTCATATGGTACTCCGGTGCTCCAGCCTTTCCCACCCCCAACTCCACCACCATCACTC 1152
Query 1141 GCTCCTGCACCCACTGGTCCGGTTATCAGCAGAGACAAAGTGAAAGAAGCCCTTTTATCC 1200
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1153 GCTCCTGCACCCACTGGTCCGGTTATCAGCAGAGACAAAGTGAAGGAAGCCCTTTTATCC 1212
Query 1201 CTGTTTCAGCACGATGAATTCATCGACATGATGACCCGAGCTTTACAAAATGCACATCAA 1260
||||| ||| | ||||||||||| |||| ||| |||||| ||||||||||||||| ||||
Sbjct 1213 CTGTTGCAGGAGGATGAATTCATTGACAAGATTACCCGAACTTTACAAAATGCACTTCAA 1272
Query 1261 CCATGAAGCTGCACTGGGTCAGCATCTACGTGTGGGACAGTGGCTGTTTGATTTAGAATG 1320
| |||||||||| |||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1273 CAATGAAGCTGCGCTGG-TCAGCATCTACGTGTGGGATAGTGGCTGTTTGATCTAGAATG 1331
Query 1321 TGTAGTTAAAATGTAGTTTTGTTTCCTCTGAAAGTGTTGTTGGAACCTTATAAGATACTG 1380
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1332 TGTAGTTAAAATGTAGTTTTGTTCCCTCTGAAAGTGTTGTTGGAACCTTATAAGATACTG 1391
Query 1381 CACTGCTCCCTTTGTTTAACTCATGGAATTACTTTTTCATTTTATCTACTTTCAAGTTTT 1440
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1392 CACTGCCCCCTTTGTTTAACTCTTGGAATTACTTTTTCATTTTATCTACTTTCAAGTTTT 1451
Query 1441 TACCTTTCCTC 1451
|||||||||||
Sbjct 1452 TACCTTTCCTC 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5