BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470899
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08380.1 | Symbols: PSAO | photosystem I subunit O | chr1:26... 1014 0.0
> AT1G08380.1 | Symbols: PSAO | photosystem I subunit O | chr1:2640813-2641828
REVERSE LENGTH=703
Length=703
Score = 1014 bits (549), Expect = 0.0
Identities = 649/695 (93%), Gaps = 16/695 (2%)
Strand=Plus/Plus
Query 1 AATAAAAATCTATTTCTTGCGTTTGTG-T-T-TGT-GTT--AAAAATAAAGGAGATCAGT 54
||||||||||||||||||| ||||||| | | | | || |||||||||||||||||||
Sbjct 4 AATAAAAATCTATTTCTTGTGTTTGTGTTGTATTTACTTAAAAAAATAAAGGAGATCAGT 63
Query 55 TTGGGAGAAAGAAGCAAAGAACaaaaaaaTGGCAGCAACATTTGCAACACCATCGACGGT 114
||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 64 TTGGGAGAAAGCAGCAAAG-A-AGAAAAATGGCAGCAACATTTGCAACACCATCGACGGT 121
Query 115 GATAGGCCTCGGAGGATCATCCATCACCACCAAACCCTTCTCTTCATCCTTTCTAAAACC 174
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 122 GATAGGCCTCGGAGGATCATCCATCACCACCAAACCCTTCTCTTCATCCTTTTTAAAACC 181
Query 175 AACATTAAGCGCCAAGAACCCTCTAAGACTCGCCGGGGCATCGGGTGGAAGAGTCACTTG 234
|||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||
Sbjct 182 AACATTAAGCGCCAAGAACCCTTTGAGACTCGCCGGTGCATCGGGAGGAAGAGTCACTTG 241
Query 235 CTTTGAGAGGAACTGGTTGAGGAGAGATTTGAACGTGGTGGGATTTGGGCTGATCGGATG 294
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 242 CTTTGAGAGGAACTGGTTGAGGAGAGATTTGAACGTGGTAGGATTTGGGCTGATCGGATG 301
Query 295 GCTAGCTCCGTCGAGTATTCCAGCGATAAACGGGAAGAGCCTGACGGGTCTCTTCTTCGA 354
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 302 GCTAGCTCCGTCGAGCATTCCAGCGATAAATGGGAAGAGCCTGACGGGTCTCTTCTTCGA 361
Query 355 TAGCATAGGAACTGAGCTGGCTCACTTCCCAACTCCTCCAGC-CGTCACTTCACAGTTCT 413
|||||| ||||||||||| ||||||||||| ||||||||||| | |||||||||||||||
Sbjct 362 TAGCATCGGAACTGAGCTCGCTCACTTCCCGACTCCTCCAGCTC-TCACTTCACAGTTCT 420
Query 414 GGTTGTGGTTGGTTACGTGGCACTTAGGCCTCTTCCTCTGCCTCACTTTCGGACAAATCG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTGTGGTTGGTTACGTGGCACTTAGGCCTCTTCCTCTGCCTCACTTTCGGACAAATCG 480
Query 474 GATTCAAGGGCAGGACTGAGGATTACTTCTAAGGATAACTATTCCTCTTC-CATTTGTAC 532
||||||||||||||||||| |||||||||||||||||||||||| | || | |||||||
Sbjct 481 GATTCAAGGGCAGGACTGAAGATTACTTCTAAGGATAACTATTCTTGTTTTCGTTTGTAC 540
Query 533 TATATGTTCTCTCTCTTGGTTATGTGTAATGTTATCAAATCAAACCAAAGCTTTCTTTGC 592
|||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 541 TATATG--CTCTCTCTTGGTTATGTGTAATATTATCAA-TCAAAACAAAGCTTTCTTTGC 597
Query 593 TATTTGATGTTTCATTCTATATATCGACTAGTCTTTCGTA-ATGATCTTGCTTTTAAAAA 651
|||||||||||||||||||||| ||||| |||||||| || ||||||||| |||||| ||
Sbjct 598 TATTTGATGTTTCATTCTATATCTCGACAAGTCTTTCTTATATGATCTTGATTTTAAGAA 657
Query 652 TGTC-GTCAGTCTAACTAAAGTGTAAAATGTTAAA 685
|||| ||||||||||||||||| | ||||||||||
Sbjct 658 TGTCTGTCAGTCTAACTAAAGTATTAAATGTTAAA 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5