BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470900
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08390.1 | Symbols: | unknown protein; Has 62 Blast hits to... 682 0.0
> AT1G08390.1 | Symbols: | unknown protein; Has 62 Blast hits
to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa
- 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:2642214-2643285 FORWARD
LENGTH=602
Length=602
Score = 682 bits (369), Expect = 0.0
Identities = 542/618 (88%), Gaps = 42/618 (7%)
Strand=Plus/Plus
Query 1 GGTAAAATGGACTACAGCTTAGCGGCGGTGAAAATGCTTTGTTCCCAGCTCCGGGACGCT 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1 GGTAAAATGGACTACAGCTTAGCGGCGGTGAAGATGCTTTGTTCTCAGCTCCGGGACGCT 60
Query 61 AAACCAACGCCTTCTCAGAACGCCACCGCCCTAGGCGGTGTACTTTTTCAACGTGCTTGG 120
||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 61 AAACCGACGCCTTCTCAGAACGCCGCCTCCCTAGGCGGTGTACTTTTTCAACGTGCTTGG 120
Query 121 TTACAGGGAGTTTTGGTCCCCATCTCC---GGCGGCGGTGATAACCATATGGTCCTTGAT 177
|||||||| |||||||||||| ||||| || ||||| ||||| | |||| ||||||
Sbjct 121 TTACAGGGCGTTTTGGTCCCCTTCTCCGGTGGAGGCGGCGATAATTGTCTGGTACTTGAT 180
Query 178 GACGGAACAGGTCTTGTGGAGCTCGGGCTCTCGAGCGATTTTGCCCTCCGTCAATGGAAA 237
|||||||| |||||| |||||||||| ||| | | |||||||||||||||||||||||||
Sbjct 181 GACGGAACCGGTCTTTTGGAGCTCGGTCTCACCAACGATTTTGCCCTCCGTCAATGGAAA 240
Query 238 TCAGGAATGTATGTGATGGTTGTTGGTGTATACCATA-TCCGTACCGGGGAGATACCTCT 296
||||||||||| ||||||||||||||||| ||||| | ||||||| ||| ||||||||||
Sbjct 241 TCAGGAATGTACGTGATGGTTGTTGGTGTCTACCA-AGTCCGTACTGGGCAGATACCTCT 299
Query 297 ACTTAAGGTTCATAAGATGGTTGACCTGTCGGTGAGCCCAGATCGTGAAGCCATGTGGTA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACTTAAGGTTCATAAGATGGTTGACCTGTCGGTGAGCCCAGATCGTGAAGCCATGTGGTA 359
Query 357 TTTAGAAGTCATGGACGCGTACAGACTCTTCTATGAGCCCTTGATCCAAGAGTTCTCTTG 416
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTAGAAGTCATGGACGCATACAGACTCTTCTATGAGCCCTTGATCCAAGAGTTCTCTTG 419
Query 417 ATTCTTCACTTAACTTTTATTCCAATTTATCTATTCTTCTTTTAGTTTCACCAGACCAGA 476
||||||||||| |||| | | || ||||||||||||||||||||||||||||||||
Sbjct 420 ATTCTTCACTTCACTTA-A--C---TT-ATCTATTCTTCTTTTAGTTTCACCAGACCAGA 472
Query 477 TTAATCC-----------ATT-----T--T-T--AGAGTCATGGGTTTGTACTTTTACGG 515
||||||| ||| | | | |||||||||||| ||||||| |||||
Sbjct 473 TTAATCCTTTTTTTGTTTATTGAAGATGATCTTTAGAGTCATGGGTATGTACTTCTACGG 532
Query 516 AATCAAAAGCAAGGTTTTATCATTTCTAAGTTCCTAACACACCGTTTGCTAGTTATCAAT 575
|||||||||||||||| |||||||| | | |||||||| || ||||||| |||||
Sbjct 533 AATCAAAAGCAAGGTTGTATCATTT-T---T----AACACACCATT-GCTAGTTTTCAAT 583
Query 576 TTATCCAAATTCTACTGC 593
|||||||| |||| ||||
Sbjct 584 TTATCCAATTTCTGCTGC 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5