BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470901
Length=2445
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08400.1 | Symbols: | RINT-1 / TIP-1 family | chr1:2643330-... 3869 0.0
> AT1G08400.1 | Symbols: | RINT-1 / TIP-1 family | chr1:2643330-2646035
REVERSE LENGTH=2463
Length=2463
Score = 3869 bits (2095), Expect = 0.0
Identities = 2333/2449 (95%), Gaps = 11/2449 (0%)
Strand=Plus/Plus
Query 1 TTTCCCGGCAAATGCTTCCGATGGAACATCCACTTCCACTGTCGTTCGTCTTGCCAAATC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 20 TTTCCCGGCAAATGCTTCCGATGGAACATCCACTTCCACTGTCGTTCGTCTTGCCAAACC 79
Query 61 CGGCCGA-CCTCCCCGGTCTTTCAGTAGGCTTTCTTGACGGTAATTTCGAAGACCTCCGA 119
||||| | ||| |||||||| || |||||||| ||||||||||||||| |||||||| |
Sbjct 80 CGGCC-ACCCTTCCCGGTCTCGCACTAGGCTTTATTGACGGTAATTTCGTAGACCTCCAA 138
Query 120 GATCTGCTCCTCCGCGCTTCGACTCTAACGTCCAATTTAAACCACGACTGTTCTGATCTA 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 139 GATCTGCTCCTCCGCGCTTCGACTCTGACGTCCAATTTAAACCACGACTGTTCTGATCTA 198
Query 180 AACGACCGTCTTCTCCATCTCCGGACGGATCTCACCAAACACGCCGTTTCCTGGATCTCA 239
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 199 AACGACCGTCTTCTCCATCTCCGGACGGATCTCACGAAGCACGCCGTTTCCTGGATCTCA 258
Query 240 ACCTCACTTTCCACTAAAGTTTC-CTTCGAAGATTTGAGATTGAACCTGGAGAGCCTCCT 298
|||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 259 ACCTCACTTTCCGCTAAAGTTTCAC-TCGAAGATTTGAGATTGAACCTGGAGAGCCTCCT 317
Query 299 CTGTCTCCCTACGGATTCTGTCGGAAAGCAAACGAATTGGGAGTTACATCAACTTGTAGA 358
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 318 CTGTCTCCCTACGGATTCTGTCGGAAAGCAAACGAATTGGGAGTTACAGCAAGTCGTAGA 377
Query 359 GGAATTGTGTCGTATACAGAATCGGCGCAAATATTTCGTGACTGCCTTAAAGTTGGAGAG 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 378 GGAATTGTGTCGTATACAGAATCGGCGTAAATATTTCGTGACTGCCTTAAAGTTGGAAAG 437
Query 419 TCTTGTTGGAGATCTTGAAGATTCAGTGTTTCATCATCCTATAAGTAAACGCAAAGGAAG 478
||||||||| |||||||||||||| ||| || |||||| ||||||||||||||||||||
Sbjct 438 TCTTGTTGGCGATCTTGAAGATTCTGTG-TT--TCATCCGATAAGTAAACGCAAAGGAAG 494
Query 479 TACGCTTCAAGATCTTGCATTGAAGCAGGAGAGGTTCAGTCATGCCATTAAGACCATGAA 538
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 495 TACGCTTCAAGATCTTGCATTGAAGCAAGAGAGATTCAGTCATGCTATTAAGACCATGAA 554
Query 539 TCAGATTGAAGAAATACTTGGTGATGTTACAAGGCATCACTCGCAGTGGCACCGCCTTGT 598
| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 555 TGAGATTGAAGAAATACTTGGTGATGTTACAAGGCATCACTCACGGTGGCGTCGCCTTGT 614
Query 599 AGATTCTGCTGATAGTAGAGTAGATAAAGGTTTGTCTGTTCTTCGTCCACAGATTATCGC 658
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 615 AGATTCTGTTGATAGTAGAGTAGATAAAAGTCTGTCTGTTCTTCGTCCACAGATTATCGC 674
Query 659 AGAGCACCGAGCTTTTCTCTCATCTCTTGGCTGGCCACCAAAACTTGCAACCTCCAAAGT 718
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 675 AGATCACCGAGCTTTTCTCTCATCTCTTGGCTGGCCACCAAAACTTGCAACATCCAAAGT 734
Query 719 CGAGCATGGAGATGTTGATAGTATCCCTAATCCTCTACTCTTGATGCAAGGAGATAAAAA 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CGAGCATGGAGAGGTTGATAGTATCCCTAATCCTCTACTCTTGATGCAAGGAGATAAAAA 794
Query 779 GGAGTCTTATTCCCAAAGCTTTTTACTCCTCTGTGGTTTACAGCAACTTAATACCCAGAA 838
||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct 795 AGAGTCTTATTCCCAAAGCTTTCTACTCCTCTGTGGTTTACAGCAACATAATACGCAGAA 854
Query 839 GGAAAAACGGAAGAAGCTTCATATGCCCAAAGAAAATGATAATGATGGACTTTGGGCTAC 898
||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 855 GGAAAAACGAAAGAAGCTTAATATGACCAAAGAAACTGATAATGATGGACTTTGGGCGAC 914
Query 899 CGATGAACTAGTTAAACCGGTTGCATCTCGGATGGAGTATCATTTTATGAAATGGGCTGA 958
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 915 CGATGAACTAGTTAAACCGGTTGCATCTCGGATGGAGTATCATTTTCTAAAATGGGCTGA 974
Query 959 CCAACCTGAGTTTATTTTTGAACTTGTCTACAAAGTTACAAGAGACTTCGCTGATGGGGT 1018
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 975 GCAACCTGAGTTTATTTTTGAACTTGTCTATAAAGTTACAAGAGACTTTGCTGATGGGGT 1034
Query 1019 GGACGATTTCTTACAGCCTTTGATTGACAGGGCTATGTTAGTAAGCTGTAGTGCTAAAGA 1078
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1035 TGACGATTTCTTACAGCCTTTGATTGATAGGGCTATGTTAGTAAGCTGTAGTGCTAAAGA 1094
Query 1079 AGCTTGGGTTTCAGCGATGGTCCAGATGCTATCTGGTTTCTTGGAGAAAAAGGTTTTTCC 1138
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1095 AGCTTGGGTTTCAGCGATGGTCCAAATGCTATCTGGTTTCTTAGAGAAAAAAGTTTTTCC 1154
Query 1139 TGGGCTTATAGATATGTACAAGGAGAAGCAAATGAAATCTGAAGTTATTTCATCGTGGTT 1198
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1155 TGGGCTTATAGATATGTACAAGGAGAAGCACATGAAATCTGAAGGTATTTCATCGTGGTT 1214
Query 1199 CCATCTTGTTGATCAGATGGTTACATTTGATAAACGAATGCAGTCATTTGTGAATTCAGA 1258
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1215 CCATCTTGTCGATCAGATGGTTACATTTGATAAGCGAATGCAGTCTTTTGTGAATACAGA 1274
Query 1259 TACTTGTCTTTCTTATGAAGGCTCTTCGACAGCGTTTTCTCAAGGTATATCAGTAATGGG 1318
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TACTTGTCTATCTTATGAAGGCTCTTCGACAGCGTTTTCTCAAGGTATATCAGTAATGGG 1334
Query 1319 ACTATTTTGTAAGAAACCTGAGTGGCTCAAGACCTGGGGGAAGATTGAGCTAAAGGATGC 1378
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1335 ACTGTTTTGTAAGAAACCTGAGTGGCTCAAAACCTGGGGGAAGATTGAGCTAAAGGATGC 1394
Query 1379 TTATAGAAAAACTAAAGAGGATGTCAAGAATGATAAAGCTTGGGTAGTTGATAGTGAAAG 1438
||||||||||| |||||||||| | |||||||| |||||||||||| |||||||||||||
Sbjct 1395 TTATAGAAAAAGTAAAGAGGATATTAAGAATGAGAAAGCTTGGGTAATTGATAGTGAAAG 1454
Query 1439 AACTACACTTGGTAATGAATCCAACACACGGTCTGCAAAGTATGTTCTATCTACAAGAGA 1498
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1455 AACTAGACTTGGTAATGAATCCAACTCACAGTCTGCAAAGTATGTTCTATCTACAAGAGA 1514
Query 1499 AGATTATAAAGCGCCATTAGTAGCAGACTCTTTTCTTAATAGGACTTGGAGGTTGATAGA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 AGATTATAAAGCGCCATTAGTAGCAGACTCTTTTCTTAATAGGACTTGGAGGTTGATAGA 1574
Query 1559 CCATGGTCTATCTCTACCGGCCATTCTACCAAGGATCCAATTTATAAGAGCTACTGCCAC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 CCATGGTCTATCTCTACCGGCCATTCTACCAAGGATCCAATTTATAAGAGCTACTGCCAC 1634
Query 1619 CAGATTTCTCTGGTGTATATTCAAAATTCTGTTACCGGAGTTCAAAAAGACTGATCTCTC 1678
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1635 CAGATTTCTCTGGTGTATATTCAAAATTCTGTTATTGGAGTTCAAAAAGACTGATCTCTC 1694
Query 1679 TCACTATATTTTGTTTGAAGATACACTGATACAAGCCTGTGGACCAATTAATGCTGCTCG 1738
||| ||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1695 TCATTATGGTTTGTCTGAAGATACACTGATACAAGCATGTGGACCGGTTAATGCTGCTCG 1754
Query 1739 GTATCTTGAATCAAAACTACGAGAATGGAGTGATGATTTGGTTTTTGTAGAGATGTGGGC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 GTATCTTGAATCAAAACTACGAGAATGGAGTGATGATTTGGTTTTTGTAGAGATGTGGGC 1814
Query 1799 TGCCGAAACCAGTGTCAATGTTGATAGAAAGCCTGAAGTTTCCTGCCAAGGCTGCTTTTT 1858
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1815 TGCCGAAACCAGTGTCAAAGTTGATAGAAAACCTGAAGTTTCCTGCCAAGGCTGCTTTTT 1874
Query 1859 TGGGGAAGAACTGAAAAGCCTTGTTGAGTTGGAAACCAATTGGCTTATGGAGATCATAAC 1918
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1875 TGGGGAAGAACTGAAAAGCCTTGTTGAGTTGGAAACCAATTGGCTTATGGAGATTATAAC 1934
Query 1919 AGTTTTTCTCCACCAATTCGACAATCTTTGCAGCGACCACTTCCACAACAATGCAGTTTC 1978
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1935 AGTTTTTCTCCACCAATTTGACAATCTTTGCAGCGACCACTTCCACAACAATGCAGTTTC 1994
Query 1979 ATGGGAGGAAGACGTCATTACCAATTCCAGCAATTTAACAGTGTCTCAGGGTGTCGCAGA 2038
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1995 ATGGGACGAAGACGTCATTACCAGCTCCAGCAATTTAACAGTGTCTCAGGGTGTCGCAGA 2054
Query 2039 AGCATTGGACAATTTGAGAAGGCATCTATGTGTTCTTCATGTAAACATGAACCCGAAAGA 2098
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2055 AGCATTGGACAATTTAAGAAGGCATCTGTGTGTTCTTCATCTAAACATGAACCCGAAAGA 2114
Query 2099 CTTCTTGGACTTGTGGAGGAATCTCGCGGAAGGGCTTGACCATTATGTTTCTCGTAAATT 2158
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 CTTCTTGGACTTGTGGAGAAATCTCGCGGAAGGGCTTGACCATTATGTTTCTCGTAAATT 2174
Query 2159 TTTCTCAGGAGATCCTGTTTTAGGGAGAAAAAAGTTTGAAAGATTTGAGGTCGACGCAGA 2218
|||||||||||| ||||||||| ||||| |||||||||| || ||||| || ||||||||
Sbjct 2175 TTTCTCAGGAGAACCTGTTTTACGGAGACAAAAGTTTGATAGGTTTGAAGTTGACGCAGA 2234
Query 2219 GGCACTTCTTACAGTGCTTCAACCTTATTGTGTTCGTCCTGGTGCATTTTTGCCTCGTGT 2278
|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2235 GGCACTTCTTACTGTGCTTAAACCTTATTGTGTTCGTCCTGGTGCATTTTTCCCTCGTGT 2294
Query 2279 GCGAGAGATTCTTAGGCTGTTGAGGATGCATGAGGAAGAAAAGGCACGGTTGAGAGGAGC 2338
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2295 GCGAGAGATTCTTAGGCTGTTGAGGATGCATGAGGAAGAAAAGGCACGATTGAGAGGAGC 2354
Query 2339 TCTAAGTCGAAATGGAAATTA-TTGTCTAAGGTTGTTTGGCATTTCTAACTTGTCTGCTC 2397
||||||||||| ||||||| | |||||||| ||||||||| ||||||||||||||| |||
Sbjct 2355 TCTAAGTCGAAGTGGAAAT-ACTTGTCTAAAGTTGTTTGGTATTTCTAACTTGTCTCCTC 2413
Query 2398 AACTTGTGGAACAATTTTGTAGGTGCT-ACTAGTAATGAATGCCTTTTT 2445
|||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2414 AACTTGTGGAACAATTTTGTAGGT-CTTACTAGTAATGAATGCCTTTTT 2461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121435118355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5