BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470906
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylas... 1954 0.0
> AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase
8 | chr1:2672451-2674628 FORWARD LENGTH=1369
Length=1369
Score = 1954 bits (1058), Expect = 0.0
Identities = 1238/1324 (94%), Gaps = 16/1324 (1%)
Strand=Plus/Plus
Query 1 CCTCCATCATCACACCACCGATGGCCTCCGACGACGTCCCAAGCGTATCTCCGTCGCCGG 60
||||||| || ||||||||| ||||||||||||||| | ||||| ||||| |||||||||
Sbjct 9 CCTCCATTATTACACCACCGTTGGCCTCCGACGACGGCTCAAGCCTATCTTCGTCGCCGG 68
Query 61 CTTCTCCGATGGCTA-AAAGTCGTGTTGACGTCTTCTGGCACGAAGGAATGCTCCGACAC 119
|||||||||||| || || ||| || |||||||||||||||||||||||||||||||||
Sbjct 69 CTTCTCCGATGGTTACCAA-TCGCGTAGACGTCTTCTGGCACGAAGGAATGCTCCGACAC 127
Query 120 GACGCCGTAGAAGGCGTCTTCGACACCGGACACGACCCAGGATTCCTCGACGTATTGGAG 179
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 128 GACGCCGTAGAAGGCGTCTTCGACACTGGATACGACCCTGGATTCCTCGACGTATTGGAG 187
Query 180 AAGCACCCGGAGAACGCCGATCGCGTCAGGAACATGCTTTCGATACTCCGACGAGGGCCC 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 188 AAGCACCCGGAGAACGCCGATCGCGTCAGGAACATGCTTTCGATTCTCCGACGCGGTCCC 247
Query 240 ATCGCTCCCCATGTCAATTGGTTTACCGGCCGTCCAGCAATCGTTTCGGAGCTTCTAATG 299
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 248 ATCGCTCCTCATGTCAATTGGTTTACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATG 307
Query 300 TTTCACACTTCAGAATATATTGACG-AGTTAGTGGAGGCAGATAAATCAGGAGAAAGGCG 358
|||||||||||||| || ||||| | || ||||||||||||||||||||||||||||| |
Sbjct 308 TTTCACACTTCAGAGTACATTGA-GAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTG 366
Query 359 TGAAATTGCTGCTGGTACTTTCATGAGCCCAGGCTCGTGGGAAGCTGCTCTTCTTGCAGC 418
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TGAAATTGCCGCAGGTACTTTCATGAGCCCAGGCTCGTGGGAAGCTGCTCTTCTTGCAGC 426
Query 419 TGGAACAACTCTATCAGCAATGCAACATATTCTTGATTGCCAT-GGAAAAGTTGCATATG 477
|||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 427 TGGAACAACTCTTTCAGCAATGCAACATATTCTTGATTGCCATGGGAAAA-TTGCATATG 485
Query 478 CTCTGGTACGCCCACCAGGCCACCACTCACAGCCTTCTCAGGCTGATGGGTATTGCTTCC 537
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 486 CTCTGGTACGCCCACCAGGTCACCACTCACAGCCTACTCAGGCTGATGGGTATTGCTTCC 545
Query 538 TCAACAATGCGGCTCTTGCTGTCAAGCTGGCATTGAATTCGGGTTCTTGTTCCCGAGTTG 597
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TCAACAACGCTGCTCTTGCTGTCAAGCTGGCATTGAATTCGGGTTCTTGTTCCCGAGTTG 605
Query 598 CCGTTATTGACATCGATGTACATTACGGAAATGGCACAGCTGAAGGGTTTTACT-CATCT 656
| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 606 CGGTTATTGACATCGATGTACATTATGGAAATGGCACAGCTGAAGGGTTTTA-TACATCT 664
Query 657 GATGAGGTTCTTACGGTGTCCCTTCATATGAACCATGGATCATGGGGATCATCTCACCCG 716
||| |||||||||||||||| || |||||||||||||||||||||||||| || ||||||
Sbjct 665 GATAAGGTTCTTACGGTGTCACTCCATATGAACCATGGATCATGGGGATCGTCCCACCCG 724
Query 717 CAGAAAGGGTCGATTGATGAAATTGGTGAAGACCTGGGATTGGGTTACAATCTGAATGTC 776
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 725 CAGAAAGGGTCGATTGATGAACTTGGTGAAGACGTGGGATTGGGTTACAATCTGAATGTC 784
Query 777 CCTTTACCAAATGGCACGGGTGACCGAGGCTATGAATATGCCATGACTGAGCTGGTGGTT 836
|||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 785 CCTTTACCGAATGGCACGGGTGACCGGGGATATGAATATGCCATGAATGAGCTGGTGGTT 844
Query 837 CCTGCAGTTAGAAGGTTTGGACCCGATATGGTTGTTCTCGTTGTTGGTCAAGACTCTAGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CCTGCAGTTAGAAGGTTTGGACCCGATATGGTTGTTCTCGTTGTTGGTCAAGACTCTAGC 904
Query 897 TATGCGTTTGATCCAAACGGGAGACAAAGCCTGACAATGAATGGATACAGAAGGATTGGT 956
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 ---GCTTTTGATCCAAACGGGAGACAAAGCCTGACAATGAATGGATACAGAAGGATTGGG 961
Query 957 CAAATAATGAGGGGAGTTGCTGAGGAGCACAGCCATGGAAGGTTGCTTATGGTGCAAGAA 1016
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 962 CAGATAATGAGGGGAGTTGCAGAGGAGCACAGCCATGGAAGGTTGCTTATGGTGCAAGAA 1021
Query 1017 GGCGGTTATCATGTAACATATGCAGCGTACTGCCTGCACGCCATGCTCGAAGGCGTGCTG 1076
||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1022 GGCGGGTATCATGTAACATATGCAGCTTACTGCCTCCACGCCATGCTCGAAGGGGTGCTG 1081
Query 1077 AAGATTCCAGAACCGCATCTATCAGATCCGATTGCTTATTATCCTGAAGAAGAAGCTATT 1136
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |
Sbjct 1082 AAGATTCCAGAACCGCATCTATCTGATCCGATCGCTTATTATCCCGAAGAAGAAGCTAAT 1141
Query 1137 GCTGTTGCAGCTGTGGAATCAATCAAAAGATACCACTCCGAATTTGTTACATCTCTCAGA 1196
|||||||| |||||||| |||||||||| ||| ||| ||||||||||| ||| |||||||
Sbjct 1142 GCTGTTGCTGCTGTGGAGTCAATCAAAACATATCACACCGAATTTGTTCCATTTCTCAGA 1201
Query 1197 GGAACTTGAAC-TGTGTCGTATGAATGACTTTATAT-ATTCCTCGTTGTCTTGTGACCTG 1254
|||||||||| || | ||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1202 GGAACTTGAAAATGGGACGTATGAATGAGTTTATGTTATTCCTCGTTGTCTTGTGACCTT 1261
Query 1255 TTGGAACACA-ACTCCAAATCAATCAGGTCAAACCCGCATATATCAAAATACTTGTTGAT 1313
|||||||||| | |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1262 TTGGAACACAGA-TCCAAATCAATCAGGTCAAACC-GTATATATCAAAATACTTGTTGAT 1319
Query 1314 CAAA 1317
||||
Sbjct 1320 CAAA 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5