BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470907
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription fact... 1441 0.0
> AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription factor
YABBY family protein | chr1:2675813-2679781 FORWARD LENGTH=1174
Length=1174
Score = 1441 bits (780), Expect = 0.0
Identities = 910/968 (94%), Gaps = 28/968 (3%)
Strand=Plus/Plus
Query 1 ATAAACCACATTAGTCTTTTCAGATTTTTTGTACACTTCCTTCACCCCCCACCCAtctct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 ATAAACCACATTAGTCTTTTCAGATTTTTTGTACACTTCCTTCATCCCCCACCCATCTCT 62
Query 61 ctctctctc-ctcctcctccctctttcttctttgtttgcccttttc-ttttattttattc 118
||||||||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 63 CTCTCTCTCTCTCATCCTTCCTCTTTCTTCTTTGCTTGCCCTTTTCTTTTTATTTTATTC 122
Query 119 ttccAAAATCAAATAGTTCCTTCTTTGATCTCATTGGGATAACTAAAAGTTTCAAGACGA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 123 TTCCAAAATCAAATAGTTCCTTCTTTGATCTCATTGGGATAACTAAAAGTTTCAAGAAGA 182
Query 179 GAAACATATCGTTGAAGAGAGAACCCACAC--aaaaaaaTGTCTGTAGATTTATCATCTG 236
|||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 183 GAAACATATCATTGAAGAGAGAACCCACACAAAAAAAAATGTCTGTAGATTTCTCATCTG 242
Query 237 AGCGTGTTTGCTATGTCCACTGCAGCTTCTGCACCACGATTTTAGCGGTAAGTGTACCAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AGCGTGTTTGCTATGTCCACTGCAGCTTCTGCACCACGATTTTAGCGGTAAGTGTACCAT 302
Query 297 ACGCAAGTTTGTTCACACTTGTGACGGTGAGATGTGGCCATTGTACCAATTTGCTCTCCC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 303 ACGCAAGTTTGTTCACACTTGTGACGGTGAGATGTGGCCATTGTACCAATTTGCTATCCC 362
Query 357 TCAACATTGGAGTTTCACTTCATCAAACCGCACCTCCTCCCATTCATCAAGATCTTCAGC 416
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 363 TCAACATTGGAGTTTCACTTCATCAAACCTCAGCTCCTCCCATTCACCAAGATCTTCAGC 422
Query 417 CGCATAAACAGCACACAACCTCTATGGTAACAAGGAAAGATTGTGCATCATCTTCAAGGA 476
| |||| |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||
Sbjct 423 CTCATAGACAGCACACAACCTCTCTGGTGACAAGGAAAGATTGTGCATCGTCTTCTAGGA 482
Query 477 GCACCAACAATTTATCGGAACACATCGATCGTGAGGCTCCTAGAATGCCTCCTATTCGCC 536
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 483 GCACCAACAATTTATCGGAAAACATTGATCGTGAGGCTCCTAGAATGCCTCCTATTCGCC 542
Query 537 CGCCGGAGAAAAGACAACGTGTACCTTCGGCCTACAACAGATTCATCAAAGAGGAAATCC 596
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 543 CACCGGAGAAAAGACAACGTGTTCCTTCGGCCTACAACAGATTCATCAAGGAGGAAATCC 602
Query 597 AAAGGATCAAGGCTTGCAATCCTGAGATTAGCCACCGTGAGGCATTTAGCACTGCTGCTA 656
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 603 AAAGGATTAAGGCTTGCAATCCAGAGATTAGCCACCGTGAGGCATTTAGCACTGCTGCTA 662
Query 657 AAAATTGGGCACATTTTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGAAAG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AAAATTGGGCACATTTTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGAAAG 722
Query 717 GCAAGCAATTAGACCAGTCAGTTGCAGGCCAAAAGTCTAATGGCTATTACTAAAGCCTTt 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GCAAGCAATTAGACCAGTCAGTTGCAGGCCAAAAGTCTAATGGCTATTACTAAAGCCTTT 782
Query 777 atatata--catacatatatatac--a--c-tatatatatG----------------CGT 813
||||||| || ||||||||| || | | |||||||||| |||
Sbjct 783 ATATATATACACACATATATACACTTATACGTATATATATGTGTATAGATATATATGCGT 842
Query 814 GTGTATGCTTTATGTTTATCTTTGTACGTACGCATTTATGAATGTGTAAGCAGAGAGCTG 873
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 843 GTGTATGATTTATGTTTATCTTTGTACGTACGCATTAATGAATGTGTAAGCAGAGAGCTG 902
Query 874 ATGATGGAA-GAGATCAGGCGAGGAAGAAGAAGATCATATAACCTTACATATGTATACAT 932
||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 903 ATGATGGAAAGAGATCAGGCGAGGAAGAAGAAGATCATATAACGTTACATATATATACAT 962
Query 933 GTATGTAT 940
||||||||
Sbjct 963 GTATGTAT 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5