BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470910
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08490.1 | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS |... 2566 0.0
> AT1G08490.1 | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS
| chloroplastic NIFS-like cysteine desulfurase | chr1:2685659-2688595
REVERSE LENGTH=1761
Length=1761
Score = 2566 bits (1389), Expect = 0.0
Identities = 1619/1725 (94%), Gaps = 35/1725 (2%)
Strand=Plus/Plus
Query 1 GAACTCGTGACATTGAAGACTCTACACTTGTTCATTCGTCTTCTCCACCATGGAAGGTGT 60
||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 GAACTTGTGACTTTGAAGACTC-ACTCTTGTTCATTCGTCTTCTCCACCATGGAAGGTGT 59
Query 61 GGCTATGAAACTCCCGTCGTTCAAATCTCTCGCCCCTAACGCAATCTCTATCGGACACCG 120
||||||||||||||||||| | | ||||||||| ||||| ||||| |||||
Sbjct 60 GGCTATGAAACTCCCGTCG--------T-T---CCCTAACGCCATCTCCATCGGCCACCG 107
Query 121 GAGCTTCTCCCGTGTTCGTCGCTCCTCTTCGCTATCCGTCTATT---CCGCCGCCGCTTC 177
|||||||||||| |||||| ||||||||||||||||||| | || |||||||||||||
Sbjct 108 GAGCTTCTCCCGCGTTCGTTGCTCCTCTTCGCTATCCGTTTGTTCCGCCGCCGCCGCTTC 167
Query 178 CTCCGCCACCATCTCCACTGATTCCGAATCCGTCTCTCTCGGCCATCGCGTTCGAAACGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 168 CTCCGCCACCATCTCCACTGATTCCGAATCCGTCTCTCTCGGCCATCGCGTTCGAAAAGA 227
Query 238 TTTCCGAATTCTCCACCAGGAAGTGAATGGGTCAAAGCTTGTGTACTTAGACAGTGCTGC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TTTCCGAATTCTCCACCAGGAAGTGAATGGGTCAAAGCTTGTGTACTTAGACAGTGCTGC 287
Query 298 AACTTCTCAGAAGCCATCAGCTGTATTGGACGCCTTGCAGAATTACTATGAGTTCTATAA 357
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 288 AACTTCTCAGAAGCCAGCAGCTGTATTGGACGCTTTGCAGAATTACTATGAGTTCTATAA 347
Query 358 TTCTAACGTTCATCGAGGAATTCACTATTTAAGTGCCAAGGCTACGGATGAATTTGAGTT 417
||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 348 TTCCAACGTTCATCGAGGAATACACTATTTAAGTGCTAAAGCTACAGATGAATTTGAGTT 407
Query 418 GGCTAGGAAAAAAGTTGCTCGTTTCATCAATGCTTCTGATAGTAGAGAGATTGTTTTCAC 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 408 AGCTAGGAAAAAAGTTGCTCGTTTCATCAATGCTTCTGATAGTAGAGAGATTGTTTTTAC 467
Query 478 AAGGAATGCAACTGAAGCTATCAATCTTGTAGCTTATTCATGGGGTCTTTCTAATCTTAA 537
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AAGGAATGCCACTGAAGCCATCAATCTTGTAGCTTATTCATGGGGTCTTTCTAATCTTAA 527
Query 538 ACCAGGAGACGAGGTTATACTTACAGTGGCCGAACATCATAGTTGCATTGTTCCTTGGCA 597
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 528 ACCAGGAGACGAGGTTATACTTACAGTTGCTGAACATCATAGTTGCATTGTTCCTTGGCA 587
Query 598 AATAGTATCTCAAAAAACTGGAGCTGTTCTAAAGTTTGTTACTTTGAATGAGGATGAAGT 657
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 588 AATTGTATCTCAAAAAACTGGAGCAGTTCTAAAGTTTGTGACTTTGAATGAGGATGAAGT 647
Query 658 CCCGGACATAGAA-AAGTTGAGAGAAATGATTTCTCCAAAGACAAAGCTCGTCGCTGTTC 716
||| |||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 648 CCCTGACATA-AACAAGTTGAGAGAATTGATTTCTCCAAAGACAAAGCTCGTCGCTGTTC 706
Query 717 ATCATGTTTCTAATGTTCTTGCATCTTCTCTTCCTATTGAAGAGATTGTGGTCTGGGCAC 776
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 707 ATCATGTTTCTAATGTTCTTGCATCTTCTCTTCCTATTGAAGAGATTGTGGTATGGGCAC 766
Query 777 ACAATGTTGGAGCGAAAGTTCTTGTCGATGCTTGTCAAAGTGTTCCTCACATGGTAGTTG 836
|| ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 767 ACGATGTTGGAGCGAAAGTTCTAGTGGATGCTTGTCAAAGTGTTCCTCACATGGTGGTTG 826
Query 837 ATGTCCAGAAGCTAAATGCTGATTTCCTAGTTGCATCTTCTCATAAGATGTGTGGACCTA 896
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 827 ATGTCCAGAAGCTTAATGCTGATTTTCTAGTTGCGTCTTCTCACAAGATGTGTGGACCTA 886
Query 897 CAGGCATTGGGTTCTTATATGGTAAGAGTGATCTTCTACATTCCATGCCTCCATTCTTAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CAGGCATTGGGTTCTTATATGGTAAGAGTGATCTTCTACATTCCATGCCTCCATTCTTAG 946
Query 957 GTGGCGGTGAAATGATCTCAGATGTATTTCTTGACCATTCAACTTATGCCGAACCTCCAT 1016
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 947 GTGGCGGAGAAATGATCTCAGATGTATTTCTTGACCATTCAACTTATGCGGAACCTCCAT 1006
Query 1017 CCAGATTTGAAGCTGGAACACCTGCAATAGGAGAAGCAATTGCCCTTGGAGCAGCAGTTG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CCAGATTTGAAGCTGGAACACCTGCAATAGGAGAAGCAATTGCCCTTGGAGCAGCAGTTG 1066
Query 1077 ATTACTTGTCAGGAATTGGCATGCCGAAAATCCATGAATATGAGGTAGA-ACTTGGTAAG 1135
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1067 ATTACTTGTCAGGAATTGGCATGCCGAAAATCCATGAATATGAGGTAGAGA-TTGGTAAG 1125
Query 1136 TATTTGTACGAGAAACTGTCTTCCCTTCCTGATGTCCGGATATACGGTCCCAGACCTTCT 1195
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1126 TATTTGTACGAGAAACTGTCTTCCCTGCCTGATGTGCGGATATACGGTCCCAGACCTTCT 1185
Query 1196 GAAAGTGTTCACAGGGGTTCTCTTTGTTCCTTCAACGTGGAGGGCTTGCACCCAACTGAT 1255
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1186 GAAAGTGTTCACAGGGGTGCTCTTTGTTCCTTCAATGTGGAGGGCTTGCACCCAACTGAT 1245
Query 1256 TTGGCAACCTTTCTTGATCAACAGCATGGAGTTGCCATAAGGTCAGGACACCACTGCGCA 1315
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1246 TTGGCAACCTTTCTTGATCAGCAGCACGGAGTTGCAATAAGGTCAGGACACCACTGCGCA 1305
Query 1316 CAGCCACTCCACCGGTATCTTGGAGTGAATGCAAGTGCACGCGCCAGCCTCTACTTTTAC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CAGCCACTCCACCGGTATCTTGGAGTGAATGCAAGTGCACGCGCCAGCCTCTACTTTTAC 1365
Query 1376 AACACGAAGGAGGACGTTGACTCCTTCATTGCTGCGCTTGCAGACACTGTGAGCTTCTTC 1435
||||| ||||| ||||||||| ||||||| | |||||| |||||||||||||||||||||
Sbjct 1366 AACACAAAGGATGACGTTGACGCCTTCATCGTTGCGCTGGCAGACACTGTGAGCTTCTTC 1425
Query 1436 AATTCTTTCAAATAAGTGGAACACCTACCTGTTGGATCTCTGGGCTGGTGTT-TATGGTA 1494
|| ||||||||||||||||||||||| |||| ||||||||| ||||||| || |||||||
Sbjct 1426 AACTCTTTCAAATAAGTGGAACACCTTCCTGCTGGATCTCTCGGCTGGT-TTGTATGGTA 1484
Query 1495 TATTGCTTCAAAGGCTA-TTAATTTAAATCTGCTTTTATATGATCAATGGGAGTGGATTT 1553
|||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1485 TATTGCTTCAGAGGCTACTTA-TTTAAATCTGCTTT-ATATGATCAATGGGAGTGGATTT 1542
Query 1554 TGGTTCTTCAAGTCCCAAGGGCCATTTGTGTTGTAGTTAGCACTT-GTATGaaaaaaaTA 1612
|| |||||||||||| |||||| ||||||||||||||||||| || ||||||||||| ||
Sbjct 1543 TGTTTCTTCAAGTCCGAAGGGCAATTTGTGTTGTAGTTAGCAATTTGTATGAAAAAA-TA 1601
Query 1613 GACC-AGCAGTAGT-ATGAACAATTTCAGGCATC-----GATCATATTTGTAGGAAAACA 1665
|||| | ||||||| |||||||||||||||| || ||||||||||||| ||| |||
Sbjct 1602 GACCGA-CAGTAGTCATGAACAATTTCAGGCCTCTACTTGATCATATTTGTACGAATACA 1660
Query 1666 TACGACAGCACATGCTTCGTTGTTAACTTGTAAGTTGCAGAAAAA 1710
|||| |||| ||||||||||||||| ||||||||| || |||||
Sbjct 1661 CACGAAAGCAAATGCTTCGTTGTTAATTTGTAAGTTTCATAAAAA 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5