BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470911
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08500.1 | Symbols: ENODL18, AtENODL18 | early nodulin-like ... 1266 0.0
> AT1G08500.1 | Symbols: ENODL18, AtENODL18 | early nodulin-like
protein 18 | chr1:2689016-2690045 FORWARD LENGTH=945
Length=945
Score = 1266 bits (685), Expect = 0.0
Identities = 875/962 (91%), Gaps = 32/962 (3%)
Strand=Plus/Plus
Query 1 ACAGTTTCTTATACCTTTCTTTATTACAAAGAAATACTATCAATCAACGAATCACAATTT 60
|||||||||||| |||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 1 ACAGTTTCTTATGCCTTTCTTTATTACAAAG-AA-A-GATCAATCAACGAATCACAATTT 57
Query 61 ATAATCAAGAAAACGTAAATGGAAAAGAGAGGAAGCAGAGTTATGTTGAGTTCTAGTTCA 120
||||||||| || ||| ||| ||||||| ||| ||| |||||| | |||| |||||
Sbjct 58 ATAATCAAG--AA---AAACGGACAAGAGAGTAAGAAGAATTATGTCGCCTTCTTGTTCA 112
Query 121 TCTTGTGTTAATGTGTTACTACTCATCATGTGCCTTATGCTTCTGAGTTTGTCAGCTGAT 180
|||||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 113 TCTTGTGTCAATGTG-T--TACTCATCATGTGCCTTATGCTTCTGAGTTTATCAGCTGAT 169
Query 181 GCGTACAAGAACTACACTGTGGGAGAGTCCACGGGATGGTTCGATATTCAGGAGAGACCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 170 GCGTACAAGAACTACACTGTGGGAGAGTCCACGGGATGGTTCGATATTCAAGAGAGACCC 229
Query 241 TCTGCTAATTATCAGAAATGGGCTGATTCCAAATCCTTCTCTTTGGGTGATTTCCTCATT 300
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 230 TCTGCTAATTATCAGAAATGGGCCGATTCCAAATCCTTTTCTTTGGGTGATTTCCTCATA 289
Query 301 TTCAACACAGATAGCAACCATTCGGTGGTTCAGACATATGATTTCAAAACATACAAAGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTCAACACAGATAGCAACCATTCGGTGGTTCAGACATATGATTTCAAAACATACAAAGAT 349
Query 361 TGTGATTACGACAATAATGAAAACAATGATACAACAGAGTGGTCGGCTGCAAATCCTTCA 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGTGATTACGACAACAATGAAAACAATGATACAACAGAGTGGTCGGCTGCAAATCCTTCA 409
Query 421 GCAACATCTCCTGTTCCCGTCTCAATAAGTGTTCCTCTTGTTAAAGAAGGTTCCAATTAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GCAACATCTCCTGTTCCCGTCTCAATAAGTGTTCCTCTTGTTAAAGAAGGTTCCAATTAT 469
Query 481 TTCTTCTCGGGAAATTATGATGGCGAACAATGTAAATTCGGACAGCATTTTATGATCAAT 540
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 470 TTCTTCTCGGGAAACTATGATGGCGAACAATGTAAATTCGGTCAGCATTTTATGATCAAT 529
Query 541 GTAACACATGGTCAGGGCTTACCCGATTTATCATCACCAGATGAAGCTGCTGCGCCTGGA 600
||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||
Sbjct 530 GTAACACATGGTCAGGGCTTACCAGATTCATCATCACCAGATGATGCTGCTGCACCTGGA 589
Query 601 CC-AG-G---CCA---A-TCCGGTGATGATGAAGTTGCTCCTGACACCATCGTCCCGGCC 651
|| || | || | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 590 CCTAGCGAATCCTCTCAGTCCGGTGATGATGAAGTTGCTCCTGATACCATCGTCCCGGCC 649
Query 652 AATTTCGACCATCCTAAAGATATTGAAAGTGATAATGATGATGATAAAGAGGTTCGTAAT 711
|||||||| |||||||||||||||||||||| | ||||||||||||||||||| || |
Sbjct 650 AATTTCGATCATCCTAAAGATATTGAAAGTGCT---GATGATGATAAAGAGGTTCATAGT 706
Query 712 AGAAAAAGTTCTTCTTCCATAACAAAATCTAATTTGTTTTGTTTAGTCTTTATGGGGTTC 771
| ||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||| ||
Sbjct 707 AAAAAAAGTTCTTCTTCCACAACAAAAACTAGTTTGTTTTGTTTTGTCTTTATGGGGCTC 766
Query 772 TTTGCATCATTTTAATCAAATATTCTTTGACttttttt-tGTATAAGCATTCTCTTTTCT 830
|||||||||||||||||||||||||||| | | ||| | |||||| ||||||| ||||||
Sbjct 767 TTTGCATCATTTTAATCAAATATTCTTTCA-TATTTGTATGTATATGCATTCTGTTTTCT 825
Query 831 TCTTTTTTCATAACCAGAATAATAATAA--AA-GAAACAGA-GAGCATTAGTGGAAGTTT 886
||||||| |||||| || |||||||||| || |||||| | ||| |||||||||| |||
Sbjct 826 TCTTTTT-CATAACTAGGATAATAATAATCAAAGAAACAAAAGAGTATTAGTGGAAATTT 884
Query 887 TAAAACAGAAAGGAAATGAAGAGAAAACAGAGTAAAGAA-ATGAGTTTTCCATTTTTTAT 945
|||| ||| ||| ||| |||| |||| |||||||||| ||||||| ||| ||||||||
Sbjct 885 TAAAGCAGTGAGGGAATAAAGAAAAAA-AGAGTAAAGATCATGAGTTATCCTTTTTTTAT 943
Query 946 CG 947
||
Sbjct 944 CG 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5