BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470916
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08550.1 | Symbols: NPQ1, AVDE1 | non-photochemical quenchin... 2473 0.0
> AT1G08550.1 | Symbols: NPQ1, AVDE1 | non-photochemical quenching
1 | chr1:2706924-2709531 FORWARD LENGTH=1776
Length=1776
Score = 2473 bits (1339), Expect = 0.0
Identities = 1596/1713 (93%), Gaps = 46/1713 (3%)
Strand=Plus/Plus
Query 1 TGGAGAAAACAAGCGCCTAGGAC----AAAAA-TGTGGGT--A-GAGGAGGAGGCGGCTT 52
|||||||||||| |||||||||| ||||| ||||||| | |||||||||| |||||
Sbjct 13 TGGAGAAAACAACCGCCTAGGACAAAAAAAAATTGTGGGTAGAGGAGGAGGAGGAGGCTT 72
Query 53 CGTTCACACACCACACGACGGAACACTCTCTTCCAAGCCTTATCCAAAGC-AAAGCATAT 111
|||||||||||||||||||||||| |||||||| || |||||||||||| ||| |||||
Sbjct 73 TGTTCACACACCACACGACGGAACATTCTCTTCCGAGTCTTATCCAAAGCAAAATCATAT 132
Query 112 TTTTCTTAAATAtcttcttct----c-c-gtctctgtctctcttcttcCCGCGGAGCTTT 165
||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 133 TTTGCTTAAATATCTTCTTCTCCGGCTCTGTCTCTGTCTCTCTTCTTCCCGCGGAGCTTT 192
Query 166 CAATCTTTGCTTGGTAACATGCTTGGCT-TGGGGAAGATTAG--AGAGTAAAGCTAATGG 222
|| | |||| ||||| | ||||||| | ||||||||||||| || || ||| |||||
Sbjct 193 CAGTTTTTGTTTGGT-A-TTGCTTGG-TGTGGGGAAGATTAGATAGTGTGAAG--AATGG 247
Query 223 CAGTAGCTACACATTGTTTCACTTCACCTTGTCATGACCGTATTCGGTTTTTCTCAA--G 280
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 248 CAGTAGCTACACATTGTTTCACTTCACCTTGTCATGACCGTATTCGATTTTTCTCAAGTG 307
Query 281 -TGAT-G-A-TGGTAGGCTTGGCATTACAAGAAAGAGGATCAATGGCACTTTCTTGCTCA 336
|||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ATGATGGTATTGGTAGGCTTGGCATTACAAGAAAGAGGATCAATGGCACTTTCTTGCTCA 367
Query 337 AGATTTTACCTCCAATCCAAA------A--T--G-----CTGGGGGGAGATCCTCACGCC 381
||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct 368 AGATTTTACCTCCAATCCAAAGTGCTGATCTCAGAACAACTGGTGGGAGATCCTCACGTC 427
Query 382 CTATATCTGCATTCAGGTCAGGATTCTCTAAGGGGATATTTGACATTGTGGCAGTACCAT 441
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 428 CTTTATCTGCATTCAGGTCAGGATTCTCTAAGGGGATATTTGACATTGTGCCATTACCAT 487
Query 442 CAAAAAATGAACTCAAGGAGCTGACCACTCCACTCTTGCTAAAACTCGTGGGTGTTTTAG 501
|||| ||||| || || ||||||||| |||| || |||||||||||||||||||||||||
Sbjct 488 CAAAGAATGAGCTGAAAGAGCTGACCGCTCCGCTGTTGCTAAAACTCGTGGGTGTTTTAG 547
Query 502 CCTGCGCCTTCCTCATTGTTCCATCTGCAGACGCAGTTGATGCACTTAAGACTTGTGCAT 561
| ||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 548 CTTGCGCGTTCCTTATTGTTCCATCTGCAGATGCAGTTGATGCACTTAAAACTTGTGCAT 607
Query 562 GCTTATTGAAGGGATGCAGGATAGAACTCGCAAAGTGCATTGCCAACCCTGCCTGCGCAG 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 608 GCTTATTGAAGGGATGCAGGATAGAACTCGCAAAGTGCATTGCCAACCCTGCCTGTGCAG 667
Query 622 CCAATGTCGCATGCCTCCAGACCTGTAATAACCGTCCAGATGAAACCGAGTGCCAGATCA 681
|||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 668 CCAATGTCGCGTGCCTTCAGACCTGCAATAACCGTCCAGATGAAACCGAGTGCCAGATTA 727
Query 682 AATGCGGGGATCT-TTTCGAAAACAGTGTAGTTGATGAGTTCAACGAGTGTGCTGTGTCG 740
|||| |||||||| ||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 728 AATGTGGGGATCTGTTT-GAGAACAGTGTTGTTGATGAGTTCAACGAGTGTGCTGTGTCG 786
Query 741 AGAAAAAAGTGTGTTCCTAGAAAATCTGATCTCGGAGAATTTCCTGCCCCAGACCCTTCT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AGAAAAAAGTGTGTTCCTAGAAAATCTGATCTCGGAGAATTTCCTGCCCCAGACCCTTCT 846
Query 801 GTTCTTGTCCAGAACTTCAACATCTCCGACTTTAACGGGAAGTGGTACATTACAAGTGGC 860
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 847 GTTCTTGTACAGAACTTCAACATCTCGGACTTTAACGGGAAGTGGTACATTACAAGTGGC 906
Query 861 TTGAATCCAACCTTTGATGCCTTCGACTGCCAGCTGCATGAGTTCCACACAGAAGGTGAC 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTGAATCCAACCTTTGATGCCTTCGACTGCCAGCTGCATGAGTTCCACACAGAAGGTGAC 966
Query 921 AACAAGCTTGTTGGAAACATCTCCTGGAGAATAAAGACCCTAGACAGTGGATTCTTTACT 980
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 967 AACAAGCTTGTTGGAAACATCTCTTGGAGAATAAAGACCCTAGACAGTGGATTCTTTACT 1026
Query 981 AGGTCAGCTGTACAAAAATTCGTGCAAGATCCTAACCAACCTGGTGTTCTCTACAATCAT 1040
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGGTCAGCCGTACAAAAATTCGTGCAAGATCCTAACCAACCTGGTGTTCTCTACAATCAT 1086
Query 1041 GACAACGAGTACCTTCACTATCAAGATGACTGGTATATCCTGTCATCAAAGATAGAGAAT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GACAACGAGTACCTTCACTATCAAGATGACTGGTATATCCTGTCATCAAAGATAGAGAAT 1146
Query 1101 AAACCTGAAGACTATATATTTGTATACTACCGTGGACGAAACGATGCTTGGGATGGATAT 1160
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1147 AAACCTGAAGACTATATATTTGTATACTACCGTGGGCGAAACGATGCTTGGGATGGATAT 1206
Query 1161 GGTGGTGCAGTTGTATACACGAGAAGTTCTGTATTACCCAATAGCATTATACCAGAGCTA 1220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1207 GGTGGTGCAGTTGTATACACGAGAAGTTCTGTATTACCCAATAGCATTATACCAGAACTC 1266
Query 1221 GAAAAGGCAGCAAAAAGCATAGGCAGAGACTTCAGTACATTCATTAGAACAGATAACACA 1280
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1267 GAAAAAGCAGCAAAAAGCATAGGCAGAGACTTCAGCACATTCATTAGAACGGATAACACA 1326
Query 1281 TGTGGTCCTGAACCTCCACTCGTAGAAAGAATTGAGAAGACAGTagaagaaggggaaagg 1340
||||||||||||||| | ||||| || ||||||||||||||||| |||||||| ||||||
Sbjct 1327 TGTGGTCCTGAACCTGCGCTCGTGGAGAGAATTGAGAAGACAGTGGAAGAAGGTGAAAGG 1386
Query 1341 ataatcgtaaaagaggttgaagagatagaagaggaagtagagaaggaagTGGAGAAAGTT 1400
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1387 ATAATCGTAAAAGAGGTTGAAGAGATAGAAGAAGAGGTAGAGAAGGAAGTGGAGAAGGTC 1446
Query 1401 GGTAAGACTGAGATGTCCTTGTTCCAGAGATTGGCTGAAGGATTTAACGAACTGAAGCAA 1460
|||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1447 GGTAGGACTGAGATGACCTTGTTCCAGAGATTGGCTGAAGGATTTAATGAACTGAAGCAA 1506
Query 1461 GACGAGGAGAATTTCGTGAGAGAGTTCAGTAAAGAAGAGATGGAGTTTTTGGATGAGATC 1520
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1507 GACGAGGAGAATTTCGTGAGAGAGTTAAGTAAAGAAGAGATGGAGTTTTTGGATGAGATC 1566
Query 1521 AAAATGGAAGCAAGTGAGATTGAAAAATTGTTTGGTAAAGCTTTGCCAATTAGGAAGGTC 1580
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 1567 AAAATGGAAGCAAGTGAGGTTGAAAAATTGTTTGGGAAAGCTTTGCCAATCAGGAAGGTC 1626
Query 1581 AGGTAGAACCAAGAACCACCATTGTTGTCCAAACTATATTATACATACTGTGTTCAGTTC 1640
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1627 AGGTAGAAACAAGAACCACCATTGTTGTACAAACTATATTATACATACTGTGTTCGGTTC 1686
Query 1641 ATATAAAGTAATATTTTTGTACACATTCATCAT 1673
||||||||||||||||||||||||| |||||||
Sbjct 1687 ATATAAAGTAATATTTTTGTACACAGTCATCAT 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5