BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470918
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08560.1 | Symbols: SYP111, KN, ATSYP111 | syntaxin of plan... 1548 0.0
> AT1G08560.1 | Symbols: SYP111, KN, ATSYP111 | syntaxin of plants
111 | chr1:2709632-2710912 REVERSE LENGTH=1191
Length=1191
Score = 1548 bits (838), Expect = 0.0
Identities = 932/978 (95%), Gaps = 4/978 (0%)
Strand=Plus/Plus
Query 1 GTGAAAAAGATGAACGACTTGATGACGAAATCGTTTATGAGTTACGTTGACTTGAAAAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 GTGAAAAAGATGAACGACTTGATGACGAAATCGTTTATGAGTTACGTTGACTTGAAAAAA 163
Query 61 GCAGCGATGAAGGATATGGAAGCAGGACCTGACTTTGATCTTGAGATGGCTTCGACGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 164 GCAGCGATGAAGGATATGGAAGCAGGACCTGACTTTGATCTTGAGATGGCTTCTACGAAA 223
Query 121 GCAGACAAGATGGATGAGAATCTGTCATCTTTCTTAGAAGAAGCAGAGTATGTGAAAGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GCAGACAAGATGGATGAGAATCTGTCATCTTTCTTAGAAGAAGCAGAGTATGTGAAAGCA 283
Query 181 GAGATGGGTCTGATTAGTGAGACACTGGCTCGGATTGAGCAGTACAACGAAGAGAGTAAA 240
||||||||| ||||||||||||| ||||||||||| || |||||| | ||||||||||||
Sbjct 284 GAGATGGGTTTGATTAGTGAGACGCTGGCTCGGATCGAACAGTACCATGAAGAGAGTAAA 343
Query 241 GGTGTGCACAAGGCAGAGTCTGTGAAGTCTCTTCGTAACAAGATCTCTAATGAGATTGTG 300
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 344 GGTGTTCACAAGGCAGAGTCTGTGAAGTCTCTTCGTAACAAGATCTCTAACGAGATTGTG 403
Query 301 TCTGGTCTGAGGAAAGCAAAATCGATAAAGTCGAAGCTGGAAGAGATGGATAAAGCCAAC 360
|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 404 TCTGGTTTGAGGAAGGCGAAATCGATTAAGTCGAAGCTGGAAGAGATGGATAAAGCCAAC 463
Query 361 AAGGAGATTAAGAGGCTCTCTGGGACTCCGGTTTACAGGAGCAGAACCGCTGTGACTAAC 420
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 464 AAGGAGATTAAAAGGCTCTCTGGGACTCCGGTTTATAGGAGCAGAACCGCTGTGACTAAT 523
Query 421 GGGCTGAGGAAGAAG-TTGAAGGAAGTGATGATGGAGTTTCAAGGGCTGAGGCAAAAGAT 479
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 524 GGGCTGAGGAAGAAACTT-AAGGAAGTGATGATGGAGTTTCAGGGGCTGAGGCAAAAGAT 582
Query 480 GATGACTGAGTACAAGGACG-CTGTTGAGAGAAGGTACTTCACTGTGACTGGAGAACATC 538
||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 583 GATGAGTGAGTACAAGGA-GACTGTTGAGAGAAGGTACTTCACTGTCACTGGAGAACATG 641
Query 539 CTGATGAAGCGATGATTGAGAAGATCATCACTGATAACGCTGGAGGTGAAGAGTTTCTCA 598
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CTAATGATGAGATGATTGAGAAGATCATCACTGATAACGCTGGAGGTGAAGAGTTTCTCA 701
Query 599 CGCGAGCAATCCAGGAACATGGTAAAGGAAAAATCTTGGAAACTGTGGTTGAGATTCAAG 658
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 702 CGCGAGCAATTCAGGAACATGGTAAAGGAAAGGTCTTGGAAACTGTGGTTGAGATTCAAG 761
Query 659 ATAGGTATGATGCAGCCAAGGAGATTGAGAAGAGTCTGTTGGAGCTTCACCAAGTGTTTC 718
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 ACAGGTATGATGCAGCAAAGGAGATTGAGAAGAGTCTGTTGGAGCTTCACCAAGTGTTTC 821
Query 719 TTGATATGGCTGTGATGGTTGAATCGCAAGGTGAACAGATGGATGAGATTGAGCATCATG 778
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 822 TTGATATGGCTGTGATGGTTGAATCGCAAGGTGAACAGATGGACGAGATCGAGCATCATG 881
Query 779 TGATAAATGCGAGCCATTACGTGGCGGATGGGGCTAATGAGCTGAAGACTGCAAAGAGTC 838
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 882 TGATTAATGCGAGCCATTACGTGGCTGATGGAGCTAATGAGCTGAAGACTGCAAAGAGTC 941
Query 839 ATCAGAGAAACAGCAGGAAATGGATGTGCATTGGTATCATTGTGTTGCTTTTGATCATTC 898
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 942 ATCAGAGAAACAGCAGAAAATGGATGTGCATTGGTATCATTGTGCTGCTTTTGATCATTC 1001
Query 899 TCATTGTTGTCATCCCCATCATAACCAGTTTCAGCTCTTCTTGAGATGCTTACTATGTTC 958
|||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 1002 TCATTGTTGTCATCCCCATCATTACCAGTTTCAGCTCTTCTTGAGATACTGGCTATGTTC 1061
Query 959 ACTCCTTGTGGTTTGTTT 976
||||||| || |||||||
Sbjct 1062 ACTCCTTTTGTTTTGTTT 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5