BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470920
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08570.1 | Symbols: ACHT4 | atypical CYS HIS rich thioredox... 2017 0.0
> AT1G08570.1 | Symbols: ACHT4 | atypical CYS HIS rich thioredoxin
4 | chr1:2712892-2714734 FORWARD LENGTH=1417
Length=1417
Score = 2017 bits (1092), Expect = 0.0
Identities = 1265/1345 (94%), Gaps = 25/1345 (2%)
Strand=Plus/Plus
Query 17 GAAAACGAAACTTCGCTGGCGACTAAAGATTGCTGAGAAGACACGTCGTCTCTGTGAGAA 76
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 GAAAGCGAAACTTCGCTGGCGACTAAAGATTGCTGAGAAGACACGTCGTCTCTGTGAGAA 101
Query 77 C-TTTTCTTTTTCTTCTGGTAAATTCTGGAGAGAGAGATATTGTATTTTTCTTC-G-TTC 133
| ||||||||||||||||||| ||||| | |||| ||||||||| ||||||||| | ||
Sbjct 102 CTTTTTCTTTTTCTTCTGGTATATTCT-G-GAGACAGATATTGT-TTTTTCTTCTGATT- 157
Query 134 GGAGAAT--TATGGCGGAAGTGATTAGCAAAACGAGTTTGTTCACCGGAGCTTGTGGGAA 191
|||||| |||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 158 AGAGAATAATATGACGGAAGTGATTAGCAAAACGAGTTTGTTCTTAGGAGCTTGT-GG-- 214
Query 192 TCATCATCACCGTGTTGATGATTTCTCTTTGTCCCCGGTGAGTTTTGGTGGGTTTGGTCT 251
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 215 TAATCATCACCGTGTTGATGATTTCTCTTTCTCTCCGGTGAGTTTTGGTGGGTTTGGTTT 274
Query 252 GAAAAAGAGTTTCTCTTGTCAGAAGCTGAAGAATCAAAAGCCTCTTACAAGTGAATTCCA 311
|||||||||||||||||||| |||||| |||| ||| |||||||||| ||||| ||| |
Sbjct 275 GAAAAAGAGTTTCTCTTGTCTGAAGCTTAAGAGTCAGAAGCCTCTTAGAAGTGTATTTTA 334
Query 312 TGGAAAACAGATCGTTTTCGGTGATGCTCAAGACGAGAGCTTCAGAAGGAGC-TTATG-T 369
|||||||||||||||||||| ||| ||||||||||||||||||||| || | | | | |
Sbjct 335 CGGAAAACAGATCGTTTTCGGAGATTCTCAAGACGAGAGCTTCAGAA-GATCATCA-GCT 392
Query 370 GT-AAATTTGCAGACAACTTTGAGGATTGGAACAGCTCAGAAGTGGTGGGAGAAAGGTCT 428
| | | | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 393 ATCACAGCT-CAGACAACTTTGAGGATTGGGACAGCTCAGAAGTGGTGGGAGAAAGGTCT 451
Query 429 GAAAGAAAACATGAGAGAGATCTCTTCAGCTCAAGAACTCGTTGACTCTCTCACTAACGC 488
|||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 452 GAAAGATAACATGAGAGAGATCTCTTCAGCTCAAGAGCTCGTTGATTCTCTTACTAACGC 511
Query 489 TGGTGATAAGCTTGTTGTTGTTGATTTCTTCTCACCTGGCTGTGGCGGCTGCAAGGCTCT 548
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 512 TGGTGATAAGCTTGTTGTTGTTGATTTCTTCTCACCTGGCTGTGGTGGCTGCAAGGCTCT 571
Query 549 TCATCCTAAGATATGTCAGTTGGCAGAGATGAACCCTGATGTGCAGTTTCTTCAGGTGAA 608
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 572 CCATCCTAAGATATGTCAGTTTGCAGAGATGAACCCGGATGTGCAGTTTCTTCAGGTGAA 631
Query 609 TTACGAGGAGCATAAGTCCATGTGTTATAGCCTCGGTGTCCATGTTCTCCCTTTTTTCCG 668
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 632 TTACGAGGAGCATAAGTCCATGTGTTATAGTCTTGGTGTCCATGTTCTCCCTTTTTTCCG 691
Query 669 ATTCTACCGAGGCTCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACCAATGCCACGATCAA 728
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 ATTCTACCGTGGCTCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACCAATGCCACGATCAA 751
Query 729 GAAATTCAGAGATGCATTGGCAAAGCATGGTCCAGATAGGTGCAGCCTTGGACCGACTAA 788
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 752 GAAATTCAGAGATGCCTTGGCAAAGCATGGTCCAGATAGGTGCAGCCTCGGACCGACCAA 811
Query 789 AGGCCTTGAAGAGAAAGAGCTTGTGGCACTTGCAGCCAACAAAGAACTCAACTTTACTTA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AGGCCTTGAAGAGAAAGAGCTTGTGGCACTTGCAGCCAACAAAGAACTCAACTTTACTTA 871
Query 849 CACACCAAAGCCTGTACCGGTTGAGAAAGAAGCAGCCACTCCTAAATCAAACCCAAGTCT 908
|||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 872 CACACCAAAGCCTGTACCAGTTGAGAAAGAAGCAGCCACTCCTGATTCAAACCCAAGTCT 931
Query 909 CCCTGTTCCTCTTCCTTCGATGAGCGCCAATGACGAAAAAACATTGGTCTCCGCAGGGAG 968
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 932 CCCTGTTCCTCTTCCTTCGATGAGCTCCAATGACGAAAAAACATTGGTCTCCGCAGGGAG 991
Query 969 ATGAGA-TCGAATAAACATTTCCCTGTACAGTTTGCGTGATAGTAGTAGTAGTAGCAGCA 1027
|||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 992 ATGAGACT-GAATAAACATTTCCCTGTATAGTTTGCGTGATAGTAGTAGTAG---CAGCA 1047
Query 1028 GCTGGATATATTGCAGTACCTAAAGATGTCAGTTCTCGGAGCAGCCAGCCGGTTTAGTGG 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 GCTGGATATATTGCAGTACCTAAAGATGTCAGTTCTCGGAGCAGCCAGCCGGTTTAGTGG 1107
Query 1088 GGTTTAGtttttttttGGGTCCCCTGAGCAAAATCGGTTCTTGGCATCTGGGTTTACCTA 1147
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1108 GGTTTAGTTTTTTTTCGGGTCCCCTGAGCAAAATCGGTTCTTGGCCTCTGGGTTTACCTA 1167
Query 1148 GAGCAAAACCAGTTCCGATGGTTACTTGAGTTTTGCTCAGTTCTTATGGGATTGAGAGTG 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1168 GAGCAAAACCAGTTCCGATGGTTACTTGAGTTTTGCTCAGTTCTTATGGGATTG-GAGTG 1226
Query 1208 GAAGGTCGTGCGCTCGGCGGCATGGAAGCTTTCTCCTCTCAATCAGCTTCGGTAGAgttt 1267
|||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 1227 GAAGGTCGTGCGCTCGGCAGCATGGAAGCTTTCTCCTTTCAATCAGCTTCAGTAGAGTTT 1286
Query 1268 tggtttctttgtttgttttt-atttgctttaagattttAATGTAAATAAAAATCCAATGA 1326
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1287 TGGTTTCTTTGTTTGTTTTTTATTTGCTTTAAGAATTTAATGTAAATAAAAATCCAATGA 1346
Query 1327 GGATTATCATACAATGTCATGAAGG 1351
|||||||||||||||||||||||||
Sbjct 1347 GGATTATCATACAATGTCATGAAGG 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5