BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470925
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08610.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2427 0.0
> AT1G08610.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:2733657-2735819 REVERSE LENGTH=2082
Length=2082
Score = 2427 bits (1314), Expect = 0.0
Identities = 1573/1693 (93%), Gaps = 38/1693 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCGAATTTGCTACTTGAGGTTCATTTCTTGCATCTTCCAAGTTTGTCTCCA 60
|||||||| ||||||||||||||||||||||| ||||||||| |||| ||| |||||| |
Sbjct 272 ATGGCTTCGTCGAATTTGCTACTTGAGGTTCAGTTCTTGCATATTCCTAGTCTGTCTCAA 331
Query 61 AAGCAGGTGAATCCTTTATCTTGCAGAAAGTTTTCTTCTTTAGATTGGAAACAAGAAATT 120
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 332 AAGCAGGCGAATCCTTTATCTTGCAGAAAGTTTTCTTCTTTAGATTGGAAGCAAGAAATT 391
Query 121 GGGTTG-AAAA--A------TTTGAGATGCCACGGCTTGATGACTAGTGTGTGCATTGAC 171
||| || |||| | ||| ||||| ||||||||| | | ||||||||||||||||
Sbjct 392 GGGCTGAAAAAGGATGTTTTTTTTAGATGTCACGGCTTGTTAAGTAGTGTGTGCATTGAC 451
Query 172 AATGTAGCTGATGTTGATGATCATGCTGAGAGAGGCTCAGAATTCCATCACTATGGTGTC 231
|||||| | ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 452 AATGTA----A-----ATGATCATGCTGAGAGAAGCTCAGAGTTCCATCACTATGGTGTC 502
Query 232 GGTAATAACTTGAGAGCC--A--G--------GAAGCAATTAGGTTTATCATCTGATGGA 279
|||| ||||||||||||| | | ||||||||| ||||||||||||||||||
Sbjct 503 GGTACTAACTTGAGAGCCAGAGTGAAACCTATGAAGCAATTTGGTTTATCATCTGATGGA 562
Query 280 CCAATTACCGAGAACGACGAAGAGACAAACAATGAGATCCTTCATAACCTGTGCAGCAAC 339
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 563 CCAATTACAGAGAACGACGAAGAGACCAACAATGAGATCCTTCATAACCTGTGCAGCAAT 622
Query 340 GGCAAGTTAACAGATGCGTGTAAACTAGTCGAGGTTATGGCACGTCATAATCAGGTTCCT 399
|| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct 623 GGGAAGTTAACAGATGCGTGCAAACTTGTCGAGGTGATGGCACGACATAATCAGGTTCCT 682
Query 400 CATTTTCCTTCTTGCTCAAACTTAGTCCGTGGTTTGGCCAGAATTGATCAACTGGATAAA 459
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 683 CATTTTCCTTCTTGCTCAAACTTAGTCCGTGGTCTAGCCAGAATTGATCAACTGGATAAA 742
Query 460 GCAATGGT-TATCTTGAGGA-TAATGGTAATGTCTGGTGGGGTTCCAGATACTATTACCT 517
||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 743 GCAAT-GTGTATCTTGA-GAGTAATGGTAATGTCTGGTGGGGTTCCAGATACTATTACCT 800
Query 518 ATAACATGATCATCGGAAATCTTTGCAAGAAAGGGCATATAAGATCTGCATTGGTCCTCT 577
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 801 ATAACATGATCATCGGAAATCTTTGCAAGAAAGGGCATATAAGAACTGCTTTGGTCCTCT 860
Query 578 TAGAAGACATGAGTTTGAGTGGGAGCCCTCCAGATGTGATCACGTATAATACAGTCATTC 637
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 861 TAGAAGATATGAGTTTGAGTGGGAGCCCTCCTGATGTGATCACGTATAACACAGTGATTC 920
Query 638 GGTGTATGTTTGATCATGGGAATGCTGAGCAAGCCATCAGGTTTTGGAAGGATCAACTGC 697
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GGTGTATGTTTGATTATGGGAATGCTGAGCAAGCCATCAGGTTTTGGAAGGATCAACTGC 980
Query 698 AGAATGGTTGCCCTCCATATATGATTACATACACGGTTTTGGTCGAACTTGTGTGCAGGT 757
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 981 AGAATGGTTGCCCTCCATTTATGATTACATACACGGTTTTGGTCGAACTCGTGTGCAGGT 1040
Query 758 ACTGTGGAAGCGCTCGAGCTATGGAAGTTTTAGAAGACATGGCAGTGGAAGGTTGTTATC 817
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1041 ACTGTGGAAGCGCTCGAGCTATAGAAGTTTTAGAAGACATGGCAGTGGAAGGTTGCTATC 1100
Query 818 CTGACATTGTCACATATAATTCTCTGGTAAACTATAACTGCAGGCGAGGGAATTTGGAAG 877
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1101 CTGACATTGTCACATATAATTCTCTGGTTAACTATAACTGCAGGCGAGGGAATTTGGAAG 1160
Query 878 AGGTGGCTTTGGTCATTCAACATATCTTATCTCATGGATTGGAACTGAACACTGTAACTT 937
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AGGTGGCTTCGGTTATTCAGCATATCTTATCTCATGGATTGGAACTGAACACTGTAACTT 1220
Query 938 ACAACACTCTTCTACATTCCCTTTGTTCAAACGAGTACTGGGATGAAGTGGAGGAGATTC 997
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1221 ACAACACTCTTCTACATTCCCTCTGTTCCCACGAGTACTGGGATGAAGTGGAGGAGATTC 1280
Query 998 TACACATCATGTACCAGACGTCATACTGTCCAACAGTTATTACTTACAACATCCTGATCA 1057
|| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1281 TAAACATCATGTACCAGACGTCCTACTGTCCAACTGTTATTACTTACAACATCCTGATTA 1340
Query 1058 ATGGTTTATGCAAAGCCAGGCTTTTGAGTCGTGCAATCGATTTCTTCTACCAAATGCTGG 1117
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1341 ATGGTTTATGCAAAGCCAGGCTTTTGAGTCGTGCAATTGATTTCTTCTACCAAATGCTGG 1400
Query 1118 AACAAAAGTGTTTGCCTGATATTGTTACTTACAACACACTTCTAGGAGCCATGTCCAAGG 1177
|||| ||||||||||||||||| || |||||||||||| |||| |||||||||||||| |
Sbjct 1401 AACAGAAGTGTTTGCCTGATATAGTCACTTACAACACAGTTCTCGGAGCCATGTCCAAAG 1460
Query 1178 AGGGAATGGTAGATGATGCGATTGAGTTGCTTGGATTGCTGAAAAGCACGA-GTTGTCTG 1236
|||| |||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
Sbjct 1461 AGGGCATGGTAGATGATGCGATTGAGTTGCTTGGATTGCTGAAAAACAC-ATGTTGTCCG 1519
Query 1237 CCTGGATTGATCACTTACAACTCTGTAATCGATGGATTGGCCAGAAAGGGCCTGATGAAG 1296
|| || ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1520 CCGGGCTTGATCACTTACAACTCTGTAATCGATGGATTGGCTAAAAAGGGCCTGATGAAG 1579
Query 1297 AAAGCATTGGAGCTGTACCATC-GTATGCTGGATGCTGGAATCTCTCCTGATGATATAAC 1355
|||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||
Sbjct 1580 AAAGCATTGGAGCTGTACCATCAG-ATGCTGGATGCTGGAATCTTTCCGGATGATATAAC 1638
Query 1356 CCGCCGATCTTTAATATATGGTTTCTGCCGGGCAAACCTAGTTGAAGAAGCTAGCCAAGT 1415
|| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1639 TCGTCGGTCTTTAATATATGGTTTCTGCCGGGCAAACCTAGTTGAAGAAGCTGGCCAAGT 1698
Query 1416 TTTAAAAGAGACGAGCAATAGAGGGAATGGGATCAGAGGTAGCACTTACAGGTTGGTGAT 1475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TTTAAAGGAGACGAGCAATAGAGGGAATGGGATCAGAGGTAGCACTTACAGGTTGGTGAT 1758
Query 1476 CCAAGGGCTATGCAAGAAGAAAGAGATGGAAATGGCGATAGAGGTTGTTGAGATAATGCT 1535
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1759 CCAAGGGCTGTGCAAGAAGAAAGAGATAGAAATGGCGATAGAGGTTGTTGAGATAATGCT 1818
Query 1536 GACAAGTGGATGCAAGCCAGATGAGACAATATACACCGCAATAGTTAAAGGCGTGGAAGA 1595
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 AACAGGTGGGTGTAAGCCAGATGAGACAATATACACCGCAATAGTTAAAGGCGTGGAAGA 1878
Query 1596 GATGGGAATGGGAAGCGAGGCTGTGGAGTTGCAGAAGAAGCTGACGCAATGGAAACTCTT 1655
|||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct 1879 GATGGGAATGGGAAGCGAGGCTGTTCAGTTGCAGAAGAAACTGAAGCAATGGAAACTCTT 1938
Query 1656 GAGAGAAGTGTAG 1668
|| ||||||||||
Sbjct 1939 GAAAGAAGTGTAG 1951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5